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Junbo Duan
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2020 – today
- 2024
- [j26]Yibo Zhang
, Wenyu Liu, Junbo Duan:
On the core segmentation algorithms of copy number variation detection tools. Briefings Bioinform. 25(2) (2024) - [j25]Junbo Duan, Xinrui Zhao, Xiaoming Wu:
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing. Briefings Bioinform. 25(4) (2024) - 2023
- [j24]Fanding Xu
Comparative study of non-convex penalties and related algorithms in compressed sensing. Digit. Signal Process. 135: 103937 (2023) - 2022
- [j23]Jian Yang, Yanmin Shuai, Junbo Duan, Donghui Xie
Impact of BRDF Spatiotemporal Smoothing on Land Surface Albedo Estimation. Remote. Sens. 14(9): 2001 (2022) - 2021
- [j22]Junbo Duan
HOPS: A Fast Algorithm for Segmenting Piecewise Polynomials of Arbitrary Orders. IEEE Access 9: 155977-155987 (2021) - [j21]Wenyu Liu
Smoothing of Time-Varying Graph With the Generalized LASSO. IEEE Access 9: 162348-162358 (2021) - [j20]Xiguo Yuan
CNV_IFTV: An Isolation Forest and Total Variation-Based Detection of CNVs from Short-Read Sequencing Data. IEEE ACM Trans. Comput. Biol. Bioinform. 18(2): 539-549 (2021) - [j19]Xiguo Yuan
ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 1893-1901 (2021) - 2020
- [j18]Guojun Liu
CRSCNV: A Cross-Model-Based Statistical Approach to Detect Copy Number Variations in Sequence Data. IEEE Access 8: 2302-2312 (2020) - [j17]Lanling Zhao, Han Liu, Xiguo Yuan, Kun Gao, Junbo Duan
Comparative study of whole exome sequencing-based copy number variation detection tools. BMC Bioinform. 21(1): 97 (2020) - [j16]Xiguo Yuan
SVSR: A Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 1082-1091 (2020) - [j15]Xiguo Yuan
CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples Using Sequence Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1141-1153 (2020)
2010 – 2019
- 2019
- [j14]Junbo Duan
A Parallelizable Framework for Segmenting Piecewise Signals. IEEE Access 7: 13217-13229 (2019) - [j13]Junbo Duan
A Joint Least Squares and Least Absolute Deviation Model. IEEE Signal Process. Lett. 26(4): 543-547 (2019) - 2016
- [j12]Junbo Duan, Charles Soussen
Generalized LASSO with under-determined regularization matrices. Signal Process. 127: 239-246 (2016) - [j11]Junbo Duan, Mingxi Wan, Hong-Wen Deng
A Sparse Model Based Detection of Copy Number Variations From Exome Sequencing Data. IEEE Trans. Biomed. Eng. 63(3): 496-505 (2016) - 2015
- [j10]Charles Soussen
Homotopy Based Algorithms for ℓ0-Regularized Least-Squares. IEEE Trans. Signal Process. 63(13): 3301-3316 (2015) - [c8]Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang, Mingxi Wan:
An optimal method to segment piecewise poisson distributed signals with application to sequencing data. EMBC 2015: 6465-6468 - 2014
- [j9]Junbo Duan, Ji-Gang Zhang, Mingxi Wan, Hong-Wen Deng
Population clustering based on copy number variations detected from next generation sequencing data. J. Bioinform. Comput. Biol. 12(4) (2014) - [j8]Hongbao Cao, Junbo Duan, Dongdong Lin, Yin Yao Shugart, Vince D. Calhoun
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNPs. NeuroImage 102: 220-228 (2014) - [j7]Junbo Duan, Hong-Wen Deng
Common Copy Number Variation Detection From Multiple Sequenced Samples. IEEE Trans. Biomed. Eng. 61(3): 928-937 (2014) - [i2]Charles Soussen, Jérôme Idier, Junbo Duan, David Brie:
ℓ2-ℓ0 regularization path tracking algorithms. CoRR abs/1406.4802 (2014) - 2013
- [j6]Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng
CNV-TV: A robust method to discover copy number variation from short sequencing reads. BMC Bioinform. 14: 150 (2013) - [j5]Wenlong Tang, Junbo Duan, Ji-Gang Zhang, Yu-Ping Wang:
Subtyping glioblastoma by combining miRNA and mRNA expression data using compressed sensing-based approach. EURASIP J. Bioinform. Syst. Biol. 2013: 2 (2013) - [c7]Junbo Duan, Mingxi Wan, Hong-Wen Deng, Yu-Ping Wang:
Modeling exome sequencing data with generalized Gaussian distribution with application to copy number variation detection. BIBM 2013: 1-7 - [c6]Hongbao Cao, Junbo Duan, Dongdong Lin, Vincent D. Calhoun
Sparse representation based biomarker selection for schizophrenia with integrated analysis of fMRI and SNP data. ISBI 2013: 756-759 - 2012
- [j4]Hongbao Cao, Junbo Duan, Dongdong Lin, Yu-Ping Wang:
Sparse Representation Based Clustering for Integrated Analysis of Gene Copy Number Variation and Gene Expression Date. Int. J. Comput. Their Appl. 19(2): 131-141 (2012) - [j3]Junbo Duan, Charles Soussen
On LARS/Homotopy Equivalence Conditions for Over-Determined LASSO. IEEE Signal Process. Lett. 19(12): 894-897 (2012) - [c5]Junbo Duan, Ji-Gang Zhang, Hongbao Cao, Hong-Wen Deng, Yu-Ping Wang:
Copy number variation estimation from multiple next-generation sequencing samples. BCB 2012: 555-557 - [c4]Hongbao Cao, Dongdong Lin, Junbo Duan, Yu-Ping Wang, Vince D. Calhoun
Bio marker identification for diagnosis of schizophrenia with integrated analysis of fMRI and SNPs. BIBM 2012: 1-6 - [c3]Junbo Duan, Ji-Gang Zhang, Hong-Wen Deng
Detection of common copy number variation with application to population clustering from next generation sequencing data. EMBC 2012: 1246-1249 - 2011
- [j2]Wenlong Tang, Hongbao Cao, Junbo Duan, Yu-Ping Wang:
A Compressed Sensing Based Approach for Subtyping of Leukemia from gene Expression Data. J. Bioinform. Comput. Biol. 9(5): 631-645 (2011) - [j1]Charles Soussen
From Bernoulli-Gaussian Deconvolution to Sparse Signal Restoration. IEEE Trans. Signal Process. 59(10): 4572-4584 (2011) - [c2]Junbo Duan, Ji-Gang Zhang, John Lefante, Hong-Wen Deng, Yu-Ping Wang:
Detection of copy number variation from next generation sequencing data with total variation penalized least square optimization. BIBM Workshops 2011: 3-12 - [c1]Wenlong Tang, Hongbao Cao, Ji-Gang Zhang, Junbo Duan, Dongdong Lin, Yu-Ping Wang:
Classifying six glioma subtypes from combined gene expression and CNVs data based on compressive sensing approach. BIBM Workshops 2011: 282-288 - [i1]Junbo Duan, Charles Soussen, David Brie, Jérôme Idier, Yu-Ping Wang:
A sufficient condition on monotonic increase of the number of nonzero entry in the optimizer of L1 norm penalized least-square problem. CoRR abs/1104.3792 (2011)
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