Identifying Alzheimer's Disease Progression Subphenotypes Via a Graph-based Framework Using Electronic Health Records.

Yuxi Liu 0003 https://orcid.org/0000-0003-1265-7926 University of Florida, Gainesville, FL, USA Yuxi Liu Yuxi Liu 0001 https://orcid.org/0000-0003-1212-9920 Beijing Normal University, Beijing, China Yuxi Liu 0002 https://orcid.org/0000-0002-3961-2691 https://www.wikidata.org/entity/Q51095751 Tsinghua University, Beijing, China Yuxi Liu 0004 https://orcid.org/0009-0004-1353-2337 Tianjin University of Technology and Education, Tianjin, China Yuxi Liu 0005 https://orcid.org/0009-0006-0430-373X Peking University, Shenzhen, China Yuxi Liu 0006 https://orcid.org/0009-0007-7051-3548 China Education and Research Network, Beijing, China Yuxi Liu 0007 https://orcid.org/0000-0002-8645-8711 Beijing China-Power Information Technology Co, Ltd, Beijing, China Yuxi Liu 0008 https://orcid.org/0009-0000-4420-6543 https://www.wikidata.org/entity/Q130841099 Delft University of Technology, The Netherlands Yuxi Liu 0009 https://orcid.org/0000-0002-3916-6185 University of California, Berkeley, CA, USA Yuxi Liu 0010 https://orcid.org/0009-0007-3083-0426 Western University, London, Ontario, Canada Yuxi Liu 0011 https://orcid.org/0000-0002-0182-084X Xi'an Research Institute of High Technology, Xi'an, China Yuxi Liu 0012 https://orcid.org/0000-0002-1576-8966 Northwestern Polytechnical University, Xi'an, Shaanxi, China Yuxi Liu 0013 https://orcid.org/0009-0008-2821-4963 Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, China Yuxi Liu 0014 https://orcid.org/0009-0009-2171-9042 University of Electronic Science and Technology of China, Chengdu, Sichuan, China Yuxi Liu 0015 https://orcid.org/0009-0004-4115-1427 Duke University, Durham, NC, USA Yuxi Liu 0016 https://orcid.org/0009-0007-5373-4840 Harbin Engineering University, Harbin, Heilongjiang, China Yuxi Liu 0017 https://orcid.org/0009-0006-1341-3279 https://www.wikidata.org/entity/Q130962676 Peng Cheng Laboratory, Shenzhen, China Yuxi Liu 0018 https://orcid.org/0009-0004-2659-1619 Southwest Jiaotong University, Chengdu, China Yuxi Liu 0019 https://orcid.org/0009-0007-2663-8407 Hunan University, Changsha, China Yuxi Liu 0020 https://orcid.org/0009-0007-3385-6306 Beijing Jiaotong University, Beijing, China Yuxi Liu 0021 https://orcid.org/0000-0002-9553-6566 South China Normal University, Guangzhou, China

Yu Huang 0018 Jie Xu 0012 Zhengkang Fan Yu Hu Xing He 0003 Aokun Chen Yuxi Liu 0003 Rui Yin 0002 Jingchuan Guo Steven T. DeKosky Michael Jaffee Manqi Zhou Chang Su 0002 Fei Wang 0001 Yi Guo 0005 Jiang Bian 0001 Identifying Alzheimer's Disease Progression Subphenotypes Via a Graph-based Framework Using Electronic Health Records. 2026 June 317-339 10 J. Heal. Informatics Res. 2 https://doi.org/10.1007/s41666-026-00230-2 db/journals/jhir/jhir10.html#HuangXFHHCLYGDJZSWGB26 streams/journals/jhir

Yuxi Liu 0003 Zhenhao Zhang Jiacong Mi Shirui Pan Tianlong Chen 0001 Yi Guo 0005 Xing He 0003 Jiang Bian 0001 GatorCLR: Personalized predictions of patient outcomes on electronic health records using self-supervised contrastive graph representation. 104851 2025 168 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2025.104851 db/journals/jbi/jbi168.html#LiuZMPCGHB25 streams/journals/jbi

Hao Dai Yu Huang 0018 Yuxi Liu 0003 Xing He 0003 Jingchuan Guo Mattia Prosperi Jiang Bian 0001 Variational temporal deconfounder network for individualized treatment effect estimation with longitudinal observational data. 104880 2025 169 J. Biomed. Informatics https://doi.org/10.1016/j.jbi.2025.104880 db/journals/jbi/jbi169.html#DaiHLHGPB25 streams/journals/jbi

Yuxi Liu 0003 Zhen Tan 0001 Zhenhao Zhang Song Wang 0013 Jingchuan Guo Huan Liu 0001 Tianlong Chen 0001 Jiang Bian 0001 A natural language processing-based approach for early detection of heart failure onset using electronic health records. 114102 2025 327 Knowl. Based Syst. https://doi.org/10.1016/j.knosys.2025.114102 db/journals/kbs/kbs327.html#LiuTZWGLCB25 streams/journals/kbs

Zhenhao Zhang Yuxi Liu 0003 Meichen Xiao Kun Wang Yu Huang 0018 Jiang Bian 0001 Ruolin Yang 0003 Fuyi Li Graph contrastive learning as a versatile foundation for advanced scRNA-seq data analysis. 2024 November 25 Briefings Bioinform. 6 https://doi.org/10.1093/bib/bbae558 db/journals/bib/bib25.html#ZhangLXWHBYL24 streams/journals/bib

Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Jun Shen 0001 Jiang Bian 0001 An Analyses of the Impact of Climatic and Environmental Conditions on COVID-19 Prevalence in Epidemic Areas in Australia, South Korea, and Italy. 33-47 2024 ADMA (4) https://doi.org/10.1007/978-981-96-0840-9_3 conf/adma/2024-4 db/conf/adma/adma2024-4.html#LiuZQSB24 streams/conf/adma Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim Jiang Bian 0001 Antonio Jimeno-Yepes Fine-grained Patient Similarity Measuring using Contrastive Graph Similarity Networks. 1-10 2024 ICHI https://doi.org/10.1109/ICHI61247.2024.00009 conf/ichi/2024 db/conf/ichi/ichi2024.html#LiuZQSBJ24 Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim Antonio Jimeno-Yepes Jun Shen 0001 Jiang Bian 0001 Hypergraph Convolutional Networks for Fine-Grained lCU Patient Similarity Analysis and Risk Prediction. 123-128 2024 ICHI https://doi.org/10.1109/ICHI61247.2024.00023 conf/ichi/2024 db/conf/ichi/ichi2024.html#LiuZQSJ0B24 Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Jiang Bian 0001 Multi-Task Deep Neural Networks for Irregularly Sampled Multivariate Clinical Time Series. 135-140 2024 ICHI https://doi.org/10.1109/ICHI61247.2024.00025 conf/ichi/2024 db/conf/ichi/ichi2024.html#LiuZQB24 Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim A Multi-Graph Fusion Framework for Patient Representation Learning. 222-227 2024 ICHI https://doi.org/10.1109/ICHI61247.2024.00036 conf/ichi/2024 db/conf/ichi/ichi2024.html#LiuZQS24 Zhenhao Zhang Yuxi Liu 0003 Jiang Bian 0001 Antonio Jimeno-Yepes Jun Shen 0001 Fuyi Li Guodong Long Flora D. Salim Boosting Patient Representation Learning via Graph Contrastive Learning. 335-350 2024 ECML/PKDD (9) https://doi.org/10.1007/978-3-031-70378-2_21 conf/pkdd/2024-9 db/conf/pkdd/pkdd2024-9.html#ZhangLBJSLLS24 streams/conf/pkdd Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin NeuralHMM: A Deep Markov Network for Health Risk Prediction using Electronic Health Records. 1-8 2023 IJCNN https://doi.org/10.1109/IJCNN54540.2023.10191594 conf/ijcnn/2023 db/conf/ijcnn/ijcnn2023.html#LiuZQ23 Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Deep Imputation-Prediction Networks for Health Risk Prediction using Electronic Health Records. 1-9 2023 IJCNN https://doi.org/10.1109/IJCNN54540.2023.10191793 conf/ijcnn/2023 db/conf/ijcnn/ijcnn2023.html#LiuZQ23a Yuxi Liu 0003 Zhenhao Zhang Campbell Thompson Richard Leibbrandt Shaowen Qin Antonio Jimeno-Yepes Stacked Attention-based Networks for Accurate and Interpretable Health Risk Prediction. 1-8 2023 IJCNN https://doi.org/10.1109/IJCNN54540.2023.10191099 conf/ijcnn/2023 db/conf/ijcnn/ijcnn2023.html#LiuZTLQJ23 Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim Antonio Jimeno-Yepes Contrastive Learning-Based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling Using EHRs. 428-443 2023 ECML/PKDD (6) https://doi.org/10.1007/978-3-031-43427-3_26 conf/pkdd/2023-6 db/conf/pkdd/pkdd2023-6.html#LiuZQSJ23

Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim Antonio Jimeno-Yepes Contrastive Learning-based Imputation-Prediction Networks for In-hospital Mortality Risk Modeling using EHRs. 2023 abs/2308.09896 CoRR https://doi.org/10.48550/arXiv.2308.09896 db/journals/corr/corr2308.html#abs-2308-09896

Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Flora D. Salim Antonio Jimeno-Yepes Jun Shen 0001 Hypergraph Convolutional Networks for Fine-grained ICU Patient Similarity Analysis and Risk Prediction. 2023 abs/2308.12575 CoRR https://doi.org/10.48550/arXiv.2308.12575 db/journals/corr/corr2308.html#abs-2308-12575

Yuxi Liu 0003 Zhenhao Zhang Antonio Jimeno-Yepes Flora D. Salim Modeling long-term dependencies and short-term correlations in patient journey data with temporal attention networks for health prediction. 16:1-16:10 2022 BCB https://doi.org/10.1145/3535508.3545535 conf/bcb/2022 db/conf/bcb/bcb2022.html#LiuZJS22 Yuxi Liu 0003 Shaowen Qin Zhenhao Zhang Wei Shao 0006 Compound Density Networks for Risk Prediction using Electronic Health Records. 1078-1085 2022 BIBM https://doi.org/10.1109/BIBM55620.2022.9995587 conf/bibm/2022 db/conf/bibm/bibm2022.html#LiuQZS22 Yuxi Liu 0003 Shaowen Qin Antonio Jimeno-Yepes Wei Shao 0006 Zhenhao Zhang Flora D. Salim Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. 1658-1663 2022 BIBM https://doi.org/10.1109/BIBM55620.2022.9995048 conf/bibm/2022 db/conf/bibm/bibm2022.html#LiuQJSZS22 Yuxi Liu 0003 Shaowen Qin Hospital Readmission Prediction via Personalized Feature Learning and Embedding: A Novel Deep Learning Framework. 89-100 2022 IEA/AIE https://doi.org/10.1007/978-3-031-08530-7_8 conf/ieaaie/2022 db/conf/ieaaie/ieaaie2022.html#LiuQ22 Yuxi Liu 0003 Shaowen Qin Zhenhao Zhang Epidemic Modeling of the Spatiotemporal Spread of COVID-19 over an Intercity Population Mobility Network. 147-159 2022 IEA/AIE https://doi.org/10.1007/978-3-031-08530-7_13 conf/ieaaie/2022 db/conf/ieaaie/ieaaie2022.html#LiuQZ22

Yuxi Liu 0003 Zhenhao Zhang Antonio Jimeno-Yepes Flora D. Salim Modeling Long-term Dependencies and Short-term Correlations in Patient Journey Data with Temporal Attention Networks for Health Prediction. 2022 abs/2207.06414 CoRR https://doi.org/10.48550/arXiv.2207.06414 db/journals/corr/corr2207.html#abs-2207-06414

Yuxi Liu 0003 Zhenhao Zhang Shaowen Qin Compound Density Networks for Risk Prediction using Electronic Health Records. 2022 abs/2208.01320 CoRR https://doi.org/10.48550/arXiv.2208.01320 db/journals/corr/corr2208.html#abs-2208-01320

Yuxi Liu 0003 Shaowen Qin Antonio Jimeno-Yepes Wei Shao 0006 Zhenhao Zhang Flora D. Salim Integrated Convolutional and Recurrent Neural Networks for Health Risk Prediction using Patient Journey Data with Many Missing Values. 2022 abs/2211.06045 CoRR https://doi.org/10.48550/arXiv.2211.06045 db/journals/corr/corr2211.html#abs-2211-06045

Yuxi Liu 0003 Shaowen Qin An Interpretable Machine Learning Approach for Predicting Hospital Length of Stay and Readmission. 73-85 2021 ADMA https://doi.org/10.1007/978-3-030-95405-5_6 conf/adma/2021-1 db/conf/adma/adma2021-1.html#LiuQ22

Yuxi Liu 0003 Jun Xiong Brain Image Recognition Algorithm and High Performance Computing of Internet of Medical Things Based on Convolutional Neural Network. 108633-108646 2019 7 IEEE Access https://doi.org/10.1109/ACCESS.2019.2933206 db/journals/access/access7.html#LiuX19d

Jiang Bian 0001 Aokun Chen Tianlong Chen 0001 Hao Dai Steven DeKoskySteven T. DeKosky Zhengkang Fan Jingchuan Guo Yi Guo 0005 Xing He 0003 Yu Hu Yu Huang 0018 Michael Jaffee Antonio Jimeno-Yepes Richard Leibbrandt Fuyi Li Huan Liu 0001 Guodong Long Jiacong Mi Shirui Pan Mattia Prosperi Shaowen Qin Flora D. Salim Wei Shao 0006 Jun Shen 0001 Chang Su 0002 Zhen Tan 0001 Campbell Thompson Fei Wang 0001 Kun Wang Song Wang 0013 Meichen Xiao Jun Xiong Jie Xu 0012 Ruolin Yang 0003 Rui Yin 0002 Zhenhao Zhang Manqi Zhou