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Ray Luo 0001
Person information
- affiliation: University of California Irvine, Department of Chemical Engineering and Materials Science / Department of Biomedical Engineering, CA, USA
Other persons with the same name
- Ray LC
(aka: Ray Luo 0002) — City University of Hong Kong, Hong Kong (and 2 more)
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2020 – today
- 2024
- [i1]Yongxian Wu, Qiang Zhu, Ray Luo:
End-to-End Reaction Field Energy Modeling via Deep Learning based Voxel-to-voxel Transform. CoRR abs/2410.03927 (2024) - 2023
- [j23]David A. Case
AmberTools. J. Chem. Inf. Model. 63(20): 6183-6191 (2023) - 2021
- [j22]Shiji Zhao
Development of a Pantetheine Force Field Library for Molecular Modeling. J. Chem. Inf. Model. 61(2): 856-868 (2021) - [j21]Junxi Mu, Hao Liu
Recent Force Field Strategies for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 61(3): 1037-1047 (2021) - 2020
- [j20]Dong Song
Environment-Specific Force Field for Intrinsically Disordered and Ordered Proteins. J. Chem. Inf. Model. 60(4): 2257-2267 (2020)
2010 – 2019
- 2019
- [j19]Quan Li, Ray Luo, Hai-Feng Chen:
Dynamical important residue network (DIRN): network inference via conformational change. Bioinform. 35(22): 4664-4670 (2019) - [j18]Haixin Wei
An efficient second-order poisson-boltzmann method. J. Comput. Chem. 40(12): 1257-1269 (2019) - [j17]Ruxi Qi
Robustness and Efficiency of Poisson-Boltzmann Modeling on Graphics Processing Units. J. Chem. Inf. Model. 59(1): 409-420 (2019) - [j16]D'artagnan Greene
Heterogeneous Dielectric Implicit Membrane Model for the Calculation of MMPBSA Binding Free Energies. J. Chem. Inf. Model. 59(6): 3041-3056 (2019) - 2017
- [j15]Changhao Wang, Li Xiao, Ray Luo
Numerical interpretation of molecular surface field in dielectric modeling of solvation. J. Comput. Chem. 38(14): 1057-1070 (2017) - [j14]Wei Ye
Allosteric Autoinhibition Pathway in Transcription Factor ERG: Dynamics Network and Mutant Experimental Evaluations. J. Chem. Inf. Model. 57(5): 1153-1165 (2017) - [j13]Dong Song
The IDP-Specific Force Field ff14IDPSFF Improves the Conformer Sampling of Intrinsically Disordered Proteins. J. Chem. Inf. Model. 57(5): 1166-1178 (2017) - 2016
- [j12]Changhao Wang, Peter H. Nguyen, Kevin Pham, Danielle Huynh, Thanh-Binh Nancy Le, Hongli Wang, Pengyu Y. Ren
Calculating protein-ligand binding affinities with MMPBSA: Method and error analysis. J. Comput. Chem. 37(27): 2436-2446 (2016) - [j11]Jingxu Yang, Hao Liu
Synergistic Allosteric Mechanism of Fructose-1, 6-bisphosphate and Serine for Pyruvate Kinase M2 via Dynamics Fluctuation Network Analysis. J. Chem. Inf. Model. 56(6): 1184-1192 (2016) - 2015
- [j10]Wei Ye
Test and Evaluation of ff99IDPs Force Field for Intrinsically Disordered Proteins. J. Chem. Inf. Model. 55(5): 1021-1029 (2015) - [j9]Wesley M. Botello-Smith, Ray Luo
Applications of MMPBSA to Membrane Proteins I: Efficient Numerical Solutions of Periodic Poisson-Boltzmann Equation. J. Chem. Inf. Model. 55(10): 2187-2199 (2015) - [j8]Zhilin Li
A semi-implicit augmented IIM for Navier-Stokes equations with open, traction, or free boundary conditions. J. Comput. Phys. 297: 182-193 (2015) - 2010
- [j7]Jun Wang
Assessment of linear finite-difference Poisson-Boltzmann solvers. J. Comput. Chem. 31(8): 1689-1698 (2010)
2000 – 2009
- 2006
- [j6]Samuel A. Danziger, Sanjay Joshua Swamidass
Functional Census of Mutation Sequence Spaces: The Example of p53 Cancer Rescue Mutants. IEEE ACM Trans. Comput. Biol. Bioinform. 3(2): 114-125 (2006) - 2005
- [j5]David A. Case, Thomas E. Cheatham III, Tom Darden, Holger Gohlke, Ray Luo
The Amber biomolecular simulation programs. J. Comput. Chem. 26(16): 1668-1688 (2005) - 2003
- [j4]Yong Duan, Chun Wu
A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. J. Comput. Chem. 24(16): 1999-2012 (2003) - 2002
- [j3]Ray Luo
Accelerated Poisson-Boltzmann calculations for static and dynamic systems. J. Comput. Chem. 23(13): 1244-1253 (2002) - 2001
- [j2]Laurent David, Ray Luo
Ligand-receptor docking with the Mining Minima optimizer. J. Comput. Aided Mol. Des. 15(2): 157-171 (2001) - 2000
- [j1]Laurent David, Ray Luo, Michael K. Gilson:
Comparison of generalized born and poisson models: Energetics and dynamics of HIV protease. J. Comput. Chem. 21(4): 295-309 (2000)
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