InterProScan 5: genome-scale protein function classification.

David Binns

Philip Jones David Binns Hsin-Yu Chang Matthew Fraser Weizhong Li 0001 Craig McAnulla Hamish McWilliam John Maslen Alex L. Mitchell Gift Nuka Sebastien Pesseat Antony F. Quinn Amaia Sangrador-Vegas Maxim Scheremetjew Siew-Yit Yong Rodrigo Lopez Sarah Hunter InterProScan 5: genome-scale protein function classification. 1236-1240 2014 30 Bioinform. 9 https://doi.org/10.1093/bioinformatics/btu031 https://www.wikidata.org/entity/Q24465930 db/journals/bioinformatics/bioinformatics30.html#JonesBCFLMMMMNPQSSYLH14

Sarah Hunter Philip Jones Alex L. Mitchell Rolf Apweiler Teresa K. Attwood Alex Bateman Thomas Bernard David Binns Peer Bork Sarah W. Burge Edouard De Castro Penny C. Coggill Matthew Corbett Ujjwal Das Louise C. Daugherty Lauranne Duquenne Robert D. Finn Matthew Fraser Julian Gough Daniel H. Haft Nicolas Hulo Daniel Kahn Elizabeth Kelly Ivica Letunic David Lonsdale Rodrigo Lopez Martin Madera John Maslen Craig McAnulla Jennifer McDowall Conor McMenamin Huaiyu Mi Prudence Mutowo-Meullenet Nicola J. Mulder Darren A. Natale Christine A. Orengo Sebastien Pesseat Marco Punta Antony F. Quinn Catherine Rivoire Amaia Sangrador-Vegas Jeremy D. Selengut Christian J. A. Sigrist Maxim Scheremetjew John G. Tate Manjulapramila Thimmajanarthanan Paul D. Thomas Cathy H. Wu Corin Yeats Siew-Yit Yong InterPro in 2011: new developments in the family and domain prediction database. 306-312 2012 40 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkr948 https://www.wikidata.org/entity/Q24620144 db/journals/nar/nar40.html#HunterJM12

Philip Jones David Binns Conor McMenamin Craig McAnulla Sarah Hunter The InterPro BioMart: federated query and web service access to the InterPro Resource. 2011 2011 Database J. Biol. Databases Curation https://doi.org/10.1093/database/bar033 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3170169/ https://www.wikidata.org/entity/Q33969854 db/journals/biodb/biodb2011.html#JonesBMMH11

Rachael P. Huntley David Binns Emily Dimmer Daniel Barrell Claire O'Donovan Rolf Apweiler QuickGO: a user tutorial for the web-based Gene Ontology browser. 2009 2009 Database J. Biol. Databases Curation https://doi.org/10.1093/database/bap010 http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2794795/ https://www.wikidata.org/entity/Q37479484 db/journals/biodb/biodb2009.html#HuntleyBDBOA09

David Binns Emily Dimmer Rachael P. Huntley Daniel Barrell Claire O'Donovan Rolf Apweiler QuickGO: a web-based tool for Gene Ontology searching. 3045-3046 2009 25 Bioinform. 22 https://doi.org/10.1093/bioinformatics/btp536 https://www.wikidata.org/entity/Q38509056 db/journals/bioinformatics/bioinformatics25.html#BinnsDHBOA09

Sarah Hunter Rolf Apweiler Teresa K. Attwood Amos Bairoch Alex Bateman David Binns Peer Bork Ujjwal Das Louise C. Daugherty Lauranne Duquenne Robert D. Finn Julian Gough Daniel H. Haft Nicolas Hulo Daniel Kahn Elizabeth Kelly Aurélie Laugraud Ivica Letunic David Lonsdale Rodrigo Lopez Martin Madera John Maslen Craig McAnulla Jennifer McDowall Jaina Mistry Alex L. Mitchell Nicola J. Mulder Darren A. Natale Christine A. Orengo Antony F. Quinn Jeremy D. Selengut Christian J. A. Sigrist Manjula Thimma Paul D. Thomas Franck Valentin Derek Wilson Cathy H. Wu Corin Yeats InterPro: the integrative protein signature database. 211-215 2009 37 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkn785 https://www.wikidata.org/entity/Q24655685 db/journals/nar/nar37.html#HunterAABBBBDDDFGHHKKLLLLMMMMMMMNOQSSTTVWWY09

Daniel Barrell Emily Dimmer Rachael P. Huntley David Binns Claire O'Donovan Rolf Apweiler The GOA database in 2009 - an integrated Gene Ontology Annotation resource. 396-403 2009 37 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkn803 https://www.wikidata.org/entity/Q34867602 db/journals/nar/nar37.html#BarrellDHBOA09

Nicola J. Mulder Rolf Apweiler Teresa K. Attwood Amos Bairoch Alex Bateman David Binns Peer Bork Virginie Buillard Lorenzo Cerutti Richard R. Copley Emmanuel Courcelle Ujjwal Das Louise C. Daugherty Mark Dibley Robert D. Finn Wolfgang Fleischmann Julian Gough Daniel H. Haft Nicolas Hulo Sarah Hunter Daniel Kahn Alexander Kanapin Anish Kejariwal Alberto Labarga Petra S. Langendijk-Genevaux David Lonsdale Rodrigo Lopez Ivica Letunic Martin Madera John Maslen Craig McAnulla Jennifer McDowall Jaina Mistry Alex L. Mitchell Anastasia N. Nikolskaya Sandra E. Orchard Christine A. Orengo Robert Petryszak Jeremy D. Selengut Christian J. A. Sigrist Paul D. Thomas Franck Valentin Derek Wilson Cathy H. Wu Corin Yeats New developments in the InterPro database. 224-228 2007 35 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gkl841 https://www.wikidata.org/entity/Q33268110 db/journals/nar/nar35.html#MulderAA07

Evelyn Camon Daniel Barrell Emily Dimmer Vivian Lee Michele Magrane John Maslen David Binns Rolf Apweiler An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. 2005 6 BMC Bioinform. S-1 https://doi.org/10.1186/1471-2105-6-S1-S17 https://www.wikidata.org/entity/Q33217255 db/journals/bmcbi/bmcbi6S.html#CamonBDLMMBA05

Nicola J. Mulder Rolf Apweiler Teresa K. Attwood Amos Bairoch Alex Bateman David Binns Paul Bradley Peer Bork Phillip Bucher Lorenzo Cerutti Richard R. Copley Emmanuel Courcelle Ujjwal Das Richard Durbin Wolfgang Fleischmann Julian Gough Daniel H. Haft Nicola Harte Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova David Lonsdale Rodrigo Lopez Ivica Letunic Martin Madera John Maslen Jennifer McDowall Alex L. Mitchell Anastasia N. Nikolskaya Sandra E. Orchard Marco Pagni Chris P. Ponting Emmanuel Quevillon Jeremy D. Selengut Christian J. A. Sigrist Ville Silventoinen David J. Studholme Robert Vaughan 0001 Cathy H. Wu InterPro, progress and status in 2005. 201-205 2005 33 Nucleic Acids Res. Database-Issue https://doi.org/10.1093/nar/gki106 https://www.wikidata.org/entity/Q24796722 db/journals/nar/nar33.html#MulderAABBBBBBCCCDDFGHHHKKKLLLMMMMNOPPQSSSSVW05

Rasko Leinonen Federico Garcia Diez David Binns Wolfgang Fleischmann Rodrigo Lopez Rolf Apweiler UniProt archive. 3236-3237 2004 20 Bioinform. 17 https://doi.org/10.1093/bioinformatics/bth191 https://www.wikidata.org/entity/Q33976927 db/journals/bioinformatics/bioinformatics20.html#LeinonenDBFLA04

Evelyn Camon Michele Magrane Daniel Barrell Vivian Lee Emily Dimmer John Maslen David Binns Nicola Harte Rodrigo Lopez Rolf Apweiler The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. 262-266 2004 32 Nucleic Acids Res. Database-Issue db/journals/nar/nar32.html#CamonMBLDMBHLA04 https://doi.org/10.1093/nar/gkh021 https://www.wikidata.org/entity/Q29616014

Nicola J. Mulder Rolf Apweiler Terri K. Attwood Amos Bairoch Daniel Barrell Alex Bateman David Binns Margaret Biswas Paul Bradley Peer Bork Philipp Bucher Richard R. Copley Emmanuel Courcelle Ujjwal Das Richard Durbin Laurent Falquet Wolfgang Fleischmann Sam Griffiths-Jones Daniel H. Haft Nicola Harte Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova Rodrigo Lopez Ivica Letunic David Lonsdale Ville Silventoinen Sandra E. Orchard Marco Pagni David Peyruc Chris P. Ponting Jeremy D. Selengut Florence Servant Christian J. A. Sigrist Robert Vaughan 0001 Evgeni M. Zdobnov The InterPro Database, 2003 brings increased coverage and new features. 315-318 2003 31 Nucleic Acids Res. 1 db/journals/nar/nar31.html#MulderAABBBBBBBBCCDDFFGHHHKKKLLLSOPPPSSSVZ03 https://doi.org/10.1093/nar/gkg046 https://www.wikidata.org/entity/Q28202393

Nicola J. Mulder Rolf Apweiler Terri K. Attwood Amos Bairoch Alex Bateman David Binns Margaret Biswas Paul Bradley Peer Bork Philipp Bucher Richard R. Copley Emmanuel Courcelle Richard Durbin Laurent Falquet Wolfgang Fleischmann Jérôme Gouzy Sam Griffiths-Jones Daniel H. Haft Henning Hermjakob Nicolas Hulo Daniel Kahn Alexander Kanapin Maria Krestyaninova Rodrigo Lopez Ivica Letunic Sue Orchard Marco Pagni David Peyruc Chris P. Ponting Florence Servant Christian J. A. Sigrist InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites 225-235 2002 3 Briefings Bioinform. 3 db/journals/bib/bib3.html#MulderAABBBBBBBCCDFFGGHHHKKKLLOPPPSS02 https://doi.org/10.1093/bib/3.3.225 https://www.wikidata.org/entity/Q33961349

Rolf Apweiler Terri K. AttwoodTeresa K. Attwood Amos Bairoch Daniel Barrell Alex Bateman Thomas Bernard Margaret Biswas Peer Bork Paul Bradley Philipp Bucher Phillip Bucher Virginie Buillard Sarah W. Burge Evelyn Camon Edouard De Castro Lorenzo Cerutti Hsin-Yu Chang Penny C. Coggill Richard R. Copley Matthew Corbett Emmanuel Courcelle Ujjwal Das Louise C. Daugherty Mark Dibley Federico Garcia Diez Emily Dimmer Lauranne Duquenne Richard Durbin Laurent Falquet Robert D. Finn Wolfgang Fleischmann Matthew Fraser Julian Gough Jérôme Gouzy Sam Griffiths-Jones Daniel H. Haft Nicola Harte Henning Hermjakob Nicolas Hulo Sarah Hunter Rachael P. Huntley Philip Jones Daniel Kahn Alexander Kanapin Anish Kejariwal Elizabeth Kelly Maria Krestyaninova Alberto Labarga Petra S. Langendijk-Genevaux Aurélie Laugraud Vivian Lee Rasko Leinonen Ivica Letunic Weizhong Li 0001 David Lonsdale Rodrigo Lopez Martin Madera Michele Magrane John Maslen Craig McAnulla Jennifer McDowall Conor McMenamin Hamish McWilliam Huaiyu Mi Jaina Mistry Alex L. Mitchell Nicola J. Mulder Prudence Mutowo-Meullenet Darren A. Natale Anastasia N. Nikolskaya Gift Nuka Claire O'Donovan Sandra E. Orchard Sue Orchard Christine A. Orengo Marco Pagni Sebastien Pesseat Robert Petryszak David Peyruc Chris P. Ponting Marco Punta Emmanuel Quevillon Antony F. Quinn Catherine Rivoire Amaia Sangrador-Vegas Maxim Scheremetjew Jeremy D. Selengut Florence Servant Christian J. A. Sigrist Ville Silventoinen David J. Studholme John G. Tate Manjula Thimma Manjulapramila Thimmajanarthanan Paul D. Thomas Franck Valentin Robert Vaughan 0001 Derek Wilson Cathy H. Wu Corin Yeats Siew-Yit Yong Evgeny M. ZdobnovEvgeni M. Zdobnov