CellML 2.0.1.

Jonathan Cooper https://orcid.org/0000-0001-6009-3542 https://www.wikidata.org/entity/Q42814733 https://www.researcherid.com/rid/F-8529-2010 https://zbmath.org/authors/?q=ai:cooper.jonathan-e

Michael Clerx Michael T. Cooling Jonathan Cooper Alan Garny Keri R. Moyle David P. Nickerson Poul M. F. Nielsen Hugh Sorby CellML 2.0.1. 2023 March 20 J. Integr. Bioinform. 1 https://doi.org/10.1515/jib-2023-0003 https://www.wikidata.org/entity/Q135314509 db/journals/jib/jib20.html#ClerxCCGMNNS23

Corina Sas Yojana Lotankar Rosalind Adam Katherine J. Bradbury Jonathan Cooper Derek L. Hill Veronica Martinez Daniel Powell "A Switch Went off in my Whole Body": Lived Experiences of Fatigue and Post-Exertional Malaise in Long Covid. 15:1-15:7 2023 CHI Extended Abstracts https://doi.org/10.1145/3544549.3585846 https://www.wikidata.org/entity/Q130954815 conf/chi/2023a db/conf/chi/chi2023a.html#SasLABCHMP23

Michael Clerx Michael T. Cooling Jonathan Cooper Alan Garny Keri R. Moyle David P. Nickerson Poul M. F. Nielsen Hugh Sorby CellML 2.0. 2020 17 J. Integr. Bioinform. 2-3 https://doi.org/10.1515/jib-2020-0021 https://www.wikidata.org/entity/Q98219491 db/journals/jib/jib17.html#ClerxCCGMNNS20

Fergus R. Cooper Ruth E. Baker Miguel O. Bernabeu Rafel Bordas Louise Bowler Alfonso Bueno-Orovio Helen M. Byrne Valentina Carapella Louie Cardone-Noott Jonathan Cooper Sara Dutta Benjamin D. Evans Alexander G. Fletcher James A. Grogan Wenxian Guo Daniel G. Harvey Maurice Hendrix David Kay Jochen Kursawe Philip K. Maini Beth McMillan Gary R. Mirams James M. Osborne Pras Pathmanathan Joe Pitt-Francis Martin Robinson Blanca Rodríguez Raymond J. Spiteri David Gavaghan Chaste: Cancer, Heart and Soft Tissue Environment. 1848 2020 5 J. Open Source Softw. 47 https://doi.org/10.21105/joss.01848 https://www.wikidata.org/entity/Q113307703 db/journals/jossw/jossw5.html#CooperBBBBBBCCC20

Yishi Liu Xiwang Dong Zhang Ren Jonathan Cooper Fault-tolerant control for commercial aircraft with actuator faults and constraints. 3849-3868 2019 356 J. Frankl. Inst. 7 https://doi.org/10.1016/j.jfranklin.2018.11.043 https://www.wikidata.org/entity/Q128284362 db/journals/jfi/jfi356.html#LiuDRC19

Frank T. Bergmann Jonathan Cooper Matthias König 0003 Ion I. Moraru David P. Nickerson Nicolas Le Novère Brett G. Olivier Sven Sahle Lucian P. Smith Dagmar Waltemath Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). 2018 15 J. Integr. Bioinform. 1 https://doi.org/10.1515/jib-2017-0086 https://www.wikidata.org/entity/Q52351622 db/journals/jib/jib15.html#BergmannCKMNNOS18

Joanna Lewis Charles E. Breeze Jane Charlesworth Oliver J. Maclaren Jonathan Cooper Where next for the reproducibility agenda in computational biology? 52 2016 10 BMC Syst. Biol. https://doi.org/10.1186/s12918-016-0288-x https://www.wikidata.org/entity/Q36079032 db/journals/bmcsb/bmcsb10.html#LewisBCMC16

Frank T. Bergmann Jonathan Cooper Nicolas Le Novère David P. Nickerson Dagmar Waltemath Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 2. 2015 12 J. Integr. Bioinform. 2 https://doi.org/10.2390/biecoll-jib-2015-262 https://www.wikidata.org/entity/Q38411444 db/journals/jib/jib12.html#BergmannCNNW15

Bernhard Knapp Rémi Bardenet Miguel O. Bernabeu Rafel Bordas Maria Bruna Ben Calderhead Jonathan Cooper Alexander G. Fletcher Derek Groen Bram Kuijper Joanna Lewis Greg J. McInerny Timo Minssen James M. Osborne Verena Paulitschke Joe Pitt-Francis Jelena Todoric Christian A. Yates David Gavaghan Charlotte M. Deane Ten Simple Rules for a Successful Cross-Disciplinary Collaboration. 2015 11 PLoS Comput. Biol. 4 https://doi.org/10.1371/journal.pcbi.1004214 https://www.wikidata.org/entity/Q28974680 db/journals/ploscb/ploscb11.html#KnappBBBBCCFGKL15

Frank T. Bergmann Richard R. Adams Stuart L. Moodie Jonathan Cooper Mihai Glont Martin Golebiewski Michael Hucka Camille Laibe Andrew K. Miller David P. Nickerson Brett G. Olivier Nicolas Rodriguez 0001 Herbert M. Sauro Martin Scharm Stian Soiland-Reyes Dagmar Waltemath Florent Yvon Nicolas Le Novère COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. 369 2014 15 BMC Bioinform. https://doi.org/10.1186/s12859-014-0369-z https://www.wikidata.org/entity/Q28649474 db/journals/bmcbi/bmcbi15.html#BergmannAMCGGHLMNORSSSWYN14

Miguel O. Bernabeu James Southern Nicholas Wilson Peter E. Strazdins Jonathan Cooper Joe Pitt-Francis Chaste: A case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. 13-32 2014 28 Int. J. High Perform. Comput. Appl. 1 https://doi.org/10.1177/1094342012474997 https://www.wikidata.org/entity/Q60022043 db/journals/ijhpca/ijhpca28.html#BernabeuSWSCP14

James M. Osborne Miguel O. Bernabeu Maria Bruna Ben Calderhead Jonathan Cooper Neil Dalchau Sara-Jane Dunn Alexander G. Fletcher Robin Freeman Derek Groen Bernhard Knapp Greg J. McInerny Gary R. Mirams Joe Pitt-Francis Biswa Sengupta David W. Wright 0001 Christian A. Yates David Gavaghan Stephen Emmott Charlotte M. Deane Ten Simple Rules for Effective Computational Research. 2014 10 PLoS Comput. Biol. 3 https://doi.org/10.1371/journal.pcbi.1003506 https://www.wikidata.org/entity/Q28974696 db/journals/ploscb/ploscb10.html#OsborneBBCCDDFFGKMMPSWYGED14

Frank T. Bergmann Richard Adams Stuart L. Moodie Jonathan Cooper Mihai Glont Martin Golebiewski Michael Hucka Camille Laibe Andrew K. Miller David P. Nickerson Brett G. Olivier Nicolas Rodriguez 0001 Herbert M. Sauro Martin Scharm Stian Soiland-Reyes Dagmar Waltemath Florent Yvon Nicolas Le Novère COMBINE archive: One File To Share Them All. 2014 abs/1407.4992 CoRR http://arxiv.org/abs/1407.4992 db/journals/corr/corr1407.html#BergmannAMCGGHLMNORSSSWYN14

Gary R. Mirams Christopher J. Arthurs Miguel O. Bernabeu Rafel Bordas Jonathan Cooper Alberto Corrias Yohan Davit Sara-Jane Dunn Alexander G. Fletcher Daniel G. Harvey Megan E. Marsh James M. Osborne Pras Pathmanathan Joe Pitt-Francis James Southern Nejib Zemzemi David Gavaghan Chaste: An Open Source C++ Library for Computational Physiology and Biology. 2013 9 PLoS Comput. Biol. 3 https://doi.org/10.1371/journal.pcbi.1002970 https://www.wikidata.org/entity/Q27324925 https://orkg.org/resource/R168521 db/journals/ploscb/ploscb9.html#MiramsABBCCDDFHMOPPSZG13

Jonathan Cooper James M. Osborne Connecting Models to Data in Multiscale Multicellular Tissue Simulations. 712-721 2013 ICCS https://doi.org/10.1016/j.procs.2013.05.235 https://www.wikidata.org/entity/Q60022046 conf/iccS/2013 db/conf/iccS/iccS2013.html#CooperO13

Dagmar Waltemath Richard R. Adams Daniel A. Beard Frank T. Bergmann Upinder S. Bhalla Randall Britten Vijayalakshmi Chelliah Mike T. Cooling Jonathan Cooper Edmund J. Crampin Alan Garny Stefan Hoops Michael Hucka Peter J. Hunter Edda Klipp Camille Laibe Andrew K. Miller Ion I. Moraru David P. Nickerson Poul M. F. Nielsen Macha Nikolski Sven Sahle Herbert M. Sauro Henning Schmidt Jacky L. Snoep Dominic P. Tolle Olaf Wolkenhauer Nicolas Le Novère Minimum Information About a Simulation Experiment (MIASE). 2011 7 PLoS Comput. Biol. 4 https://doi.org/10.1371/journal.pcbi.1001122 https://www.wikidata.org/entity/Q21145328 db/journals/ploscb/ploscb7.html#WaltemathABBBBCCCCGHHHKLMMNNNSSSSTWN11

David Johnson 0006 Jonathan Cooper Steve McKeever TumorML: Concept and requirements of an in silico cancer modelling markup language. 441-444 2011 EMBC https://doi.org/10.1109/IEMBS.2011.6090060 https://www.wikidata.org/entity/Q48015630 conf/embc/2011 db/conf/embc/embc2011.html#JohnsonCM11

Andrew K. Miller Justin Marsh Adam Reeve Alan Garny Randall Britten Matt D. B. Halstead Jonathan Cooper David P. Nickerson Poul M. F. Nielsen An overview of the CellML API and its implementation. 178 2010 11 BMC Bioinform. https://doi.org/10.1186/1471-2105-11-178 https://www.wikidata.org/entity/Q33551058 db/journals/bmcbi/bmcbi11.html#MillerMRGBHCNN10

Jonathan Cooper Jonathan P. Whiteley David J. Gavaghan A Posteriori Error Analysis for the Use of Lookup Tables in Cardiac Electrophysiology Simulations. 2167-2189 2010 32 SIAM J. Sci. Comput. 4 https://doi.org/10.1137/090773064 https://www.wikidata.org/entity/Q57014623 db/journals/siamsc/siamsc32.html#CooperWG10

Joe Pitt-Francis Pras Pathmanathan Miguel O. Bernabeu Rafel Bordas Jonathan Cooper Alexander G. Fletcher Gary R. Mirams Philip J. Murray James M. Osborne Alex Walter S. Jonathan Chapman Alan Garny Ingeborg M. M. van Leeuwen Philip K. Maini Blanca Rodríguez Sarah L. Waters Jonathan P. Whiteley Helen M. Byrne David Gavaghan Chaste: A test-driven approach to software development for biological modelling. 2452-2471 2009 180 Comput. Phys. Commun. 12 https://doi.org/10.1016/j.cpc.2009.07.019 https://www.wikidata.org/entity/Q57014644 db/journals/cphysics/cphysics180.html#Pitt-FrancisPBBCFMMOWCGLMRWWBG09

Jonathan Cooper Steve McKeever A model-driven approach to automatic conversion of physical units. 337-359 2008 38 Softw. Pract. Exp. 4 https://doi.org/10.1002/spe.828 https://www.wikidata.org/entity/Q60022049 db/journals/spe/spe38.html#CooperM08

Jonathan Cooper Steve McKeever Experience report: a Haskell interpreter for cellML. 247-250 2007 conf/icfp/2007 ICFP https://doi.org/10.1145/1291151.1291190 https://doi.org/10.1145/1291220.1291190 https://www.wikidata.org/entity/Q60022050 db/conf/icfp/icfp2007.html#CooperM07 Jonathan Cooper Steve McKeever Alan Garny On the application of partial evaluation to the optimisation of cardiac electrophysiological simulations. 12-20 2006 conf/pepm/2006 PEPM https://doi.org/10.1145/1111542.1111546 https://www.wikidata.org/entity/Q60022052 db/conf/pepm/pepm2006.html#CooperMG06 Jonathan Cooper Engaging the Visitor: Relevance, Participation and Motivation in Hypermedia Design. 174-177 1993 conf/ichim/1993 ICHIM db/conf/ichim/ichim1993.html#Cooper93 Rosalind Adam Richard Adams Richard R. Adams Christopher J. Arthurs Ruth E. Baker Rémi Bardenet Daniel A. Beard Frank T. Bergmann Miguel O. Bernabeu Upinder S. Bhalla Rafel Bordas Louise Bowler Katherine J. Bradbury Charles E. Breeze Randall Britten Maria Bruna Alfonso Bueno-Orovio Helen M. Byrne Ben Calderhead Valentina Carapella Louie Cardone-Noott S. Jonathan Chapman Jane Charlesworth Vijayalakshmi Chelliah Michael Clerx Mike T. CoolingMichael T. Cooling Fergus R. Cooper Alberto Corrias Edmund J. Crampin Neil Dalchau Yohan Davit Charlotte M. Deane Xiwang Dong Sara-Jane Dunn Sara Dutta Stephen Emmott Benjamin D. Evans Alexander G. Fletcher Robin Freeman Alan Garny David GavaghanDavid J. Gavaghan Mihai Glont Martin Golebiewski Derek Groen James A. Grogan Wenxian Guo Matt D. B. Halstead Daniel G. Harvey Maurice Hendrix Derek L. Hill Stefan Hoops Michael Hucka Peter J. Hunter David Johnson 0006 David Kay Edda Klipp Bernhard Knapp Matthias König 0003 Bram Kuijper Jochen Kursawe Camille Laibe Ingeborg M. M. van Leeuwen Joanna Lewis Yishi Liu Yojana Lotankar Oliver J. Maclaren Philip K. Maini Justin Marsh Megan E. Marsh Veronica Martinez Greg J. McInerny Steve McKeever Beth McMillan Andrew K. Miller Timo Minssen Gary R. Mirams Stuart L. Moodie Ion I. Moraru Keri R. Moyle Philip J. Murray David P. Nickerson Poul M. F. Nielsen Macha Nikolski Nicolas Le Novère Brett G. Olivier James M. Osborne Pras Pathmanathan Verena Paulitschke Joe Pitt-Francis Daniel Powell Adam Reeve Zhang Ren Martin Robinson Blanca Rodríguez Nicolas Rodriguez 0001 Sven Sahle Corina Sas Herbert M. Sauro Martin Scharm Henning Schmidt Biswa Sengupta Lucian P. Smith Jacky L. Snoep Stian Soiland-Reyes Hugh Sorby James Southern Raymond J. Spiteri Peter E. Strazdins Jelena Todoric Dominic P. Tolle Dagmar Waltemath Alex Walter Sarah L. Waters Jonathan P. Whiteley Nicholas Wilson Olaf Wolkenhauer David W. Wright 0001 Christian A. Yates Florent Yvon Nejib Zemzemi