Computational design of co-assembling protein-DNA nanowires. - Mou, Yun; Yu, Jiun-Yann; Wannier, Timothy M.; Guo, Chin-Lin; Mayo, Stephen L. (Nat., 2015)

GRID: A high-resolution protein structure refinement algorithm. - Chitsaz, Mohsen; Mayo, Stephen L. (J. Comput. Chem., 2013)

An efficient algorithm for multistate protein design based on FASTER. - Allen, Benjamin D.; Mayo, Stephen L. (J. Comput. Chem., 2010)

An improved pairwise decomposable finite-difference Poisson-Boltzmann method for computational protein design. - Vizcarra, Christina L.; Zhang, Naigong; Marshall, Shannon A.; Wingreen, Ned S.; Zeng, Chen; Mayo, Stephen L. (J. Comput. Chem., 2008)

A search algorithm for fixed-composition protein design. - Hom, Geoffrey K.; Mayo, Stephen L. (J. Comput. Chem., 2006)

Dramatic performance enhancements for the FASTER optimization algorithm. - Allen, Benjamin D.; Mayo, Stephen L. (J. Comput. Chem., 2006)

Adaptation of a fast Fourier transform-based docking algorithm for protein design. - Huang, Po-Ssu; Love, John J.; Mayo, Stephen L. (J. Comput. Chem., 2005)

Preprocessing of rotamers for protein design calculations. - Shah, Premal S.; Hom, Geoffrey K.; Mayo, Stephen L. (J. Comput. Chem., 2004)

Exact rotamer optimization for protein design. - Gordon, D. Benjamin; Hom, Geoffrey K.; Mayo, Stephen L.; Pierce, Niles A. (J. Comput. Chem., 2003)

Conformational splitting: A more powerful criterion for dead-end elimination. - Pierce, Niles A.; Spriet, Jan A.; Desmet, J.; Mayo, Stephen L. (J. Comput. Chem., 2000)

Radical performance enhancements for combinatorial optimization algorithms based on the dead-end elimination theorem. - Gordon, D. Benjamin; Mayo, Stephen L. (J. Comput. Chem., 1998)