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Peter J. Thomas 0001
Person information
- affiliation: Case Western Reserve University, Cleveland, Ohio, USA
- affiliation (2004 - 2006): Oberlin College, OH, USA
- affiliation (2000 - 2004): Salk Institute, San Diego, CA, USA
- affiliation (PhD 2000): University of Chicago, IL, USA
Other persons with the same name
- Peter J. Thomas 0002 — University of the West of England, Bristol, UK
- Peter J. Thomas 0003 — Central Queensland University, Rockhampton, QLD, Australia
- Peter J. Thomas 0004 — Summagraphics Corp.
- Peter J. Thomas 0005
— University of Warwick, Coventry, UK
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2020 – today
- 2025
- [j42]Jean-Marc Fellous, Peter J. Thomas, Paul H. E. Tiesinga, Benjamin Lindner:
Beyond the Nobel prizes: towards new synergies between Computational Neuroscience and Artificial Intelligence. Biol. Cybern. 119(1): 1 (2025) - 2024
- [j41]Casey O. Diekman, Peter J. Thomas
COVID-19 and silent hypoxemia in a minimal closed-loop model of the respiratory rhythm generator. Biol. Cybern. 118(3-4): 145-163 (2024) - [j40]Zhuojun Yu
Variational analysis of sensory feedback mechanisms in powerstroke-recovery systems. Biol. Cybern. 118(5-6): 277-309 (2024) - [j39]Max Kreider
On the Relation between Infinitesimal Shape Response Curves and Phase-Amplitude Reduction for Single and Coupled Limit-Cycle Oscillators. SIAM J. Appl. Dyn. Syst. 23(2): 1636-1676 (2024) - [c16]Tyler S. Barker
Fitness Value of Subjective Information for Living Organisms. NANOCOM 2024: 54-59 - 2023
- [j38]Chris Fietkiewicz, Robert A. McDougal, David Corrales Marco, Hillel J. Chiel, Peter J. Thomas
Tutorial: using NEURON for neuromechanical simulations. Frontiers Comput. Neurosci. 17 (2023) - [j37]Zhuojun Yu
Sensitivity to Control Signals in Triphasic Rhythmic Neural Systems: A Comparative Mechanistic Analysis via Infinitesimal Local Timing Response Curves. Neural Comput. 35(6): 1028-1085 (2023) - [c15]Tyler Barker, Peter J. Thomas
A Metric to Quantify Subjective Information in Biological Gradient Sensing. GLOBECOM 2023: 577-582 - [i13]Daniel Chen, Alexander G. Strang, Andrew W. Eckford, Peter J. Thomas
Explicitly Solvable Continuous-time Inference for Partially Observed Markov Processes. CoRR abs/2301.00843 (2023) - 2022
- [j36]James MacLaurin, Jean-Marc Fellous, Peter J. Thomas
Stochastic oscillators in biology: introduction to the special issue. Biol. Cybern. 116(2): 119-120 (2022) - [j35]Alberto Pérez-Cervera
Quantitative comparison of the mean-return-time phase and the stochastic asymptotic phase for noisy oscillators. Biol. Cybern. 116(2): 219-234 (2022) - [j34]Konstantin Holzhausen
Mean-return-time phase of a stochastic oscillator provides an approximate renewal description for the associated point process. Biol. Cybern. 116(2): 235-251 (2022) - [j33]Yangyang Wang
Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems. Biol. Cybern. 116(5): 687-710 (2022) - [j32]Tyler Barker, Massimiliano Pierobon
Subjective Information and Survival in a Simulated Biological System. Entropy 24(5): 639 (2022) - [j31]Sasitharan Balasubramaniam
Guest Editorial Special Issue on "Edge-Based Wireless Communications Technologies to Counter Communicable Infectious Diseases". IEEE J. Sel. Areas Commun. 40(11): 3119-3121 (2022) - [j30]Alexander S. Moffett
Cheater suppression and stochastic clearance through quorum sensing. PLoS Comput. Biol. 18(7) (2022) - [j29]Alexander Strang
The Network HHD: Quantifying Cyclic Competition in Trait-Performance Models of Tournaments. SIAM Rev. 64(2): 360-391 (2022) - [j28]Daniel Chen
Explicitly Solvable Continuous-Time Inference for Partially Observed Markov Processes. IEEE Trans. Signal Process. 70: 6232-6242 (2022) - [c14]Wenhuan Sun
GymSlug: Deep Reinforcement Learning Toward Bio-inspired Control Based on Aplysia californica Feeding. Living Machines 2022: 236-248 - [c13]Shane Riddle
A Synthetic Nervous System with Coupled Oscillators Controls Peristaltic Locomotion. Living Machines 2022: 249-261 - 2021
- [j27]Benjamin Lindner
Biological Cybernetics: 60 years and more to come. Biol. Cybern. 115(1): 5-6 (2021) - [j26]Zhuojun Yu
Dynamical consequences of sensory feedback in a half-center oscillator coupled to a simple motor system. Biol. Cybern. 115(2): 135-160 (2021) - [j25]Victoria A. Webster-Wood
Correction to: Control for multifunctionality: bioinspired control based on feeding in Aplysia californica. Biol. Cybern. 115(2): 191 (2021) - [j24]Shusen Pu
Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding. Biol. Cybern. 115(3): 267-302 (2021) - [j23]Shusen Pu
Correction to: Resolving molecular contributions of ion channel noise to interspike interval variability through stochastic shielding. Biol. Cybern. 115(3): 303-304 (2021) - [j22]Yangyang Wang
Shape versus Timing: Linear Responses of a Limit Cycle with Hard Boundaries under Instantaneous and Static Perturbation. SIAM J. Appl. Dyn. Syst. 20(2): 701-744 (2021) - [c12]Tyler Barker, Peter J. Thomas
Subjective Information in Life Processes: A Computational Case Study. NANOCOM 2021: 6:1-6:6 - 2020
- [j21]Benjamin Lindner, Peter J. Thomas
A Renewed Vision for Biological Cybernetics. Biol. Cybern. 114(3): 315-316 (2020) - [j20]Victoria A. Webster-Wood
Control for multifunctionality: bioinspired control based on feeding in Aplysia californica. Biol. Cybern. 114(6): 557-588 (2020) - [j19]Shusen Pu
Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics. Neural Comput. 32(10): 1775-1835 (2020) - [j18]Alexander Cao, Benjamin Lindner, Peter J. Thomas
A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators. SIAM J. Appl. Math. 80(1): 422-447 (2020) - [c11]Marshaun N. Fitzpatrick
Robotics Application of a Method for Analytically Computing Infinitesimal Phase Response Curves. Living Machines 2020: 104-115 - [i12]Shusen Pu, Peter J. Thomas
Fast and Accurate Langevin Simulations of Stochastic Hodgkin-Huxley Dynamics. CoRR abs/2005.10598 (2020) - [i11]Victoria A. Webster-Wood, Jeffrey P. Gill, Peter J. Thomas
Control for Multifunctionality: Bioinspired Control Based on Feeding in Aplysia californica. CoRR abs/2008.04978 (2020) - [i10]Shusen Pu
Resolving Molecular Contributions of Ion Channel Noise to Interspike Interval Variability through Stochastic Shielding. CoRR abs/2011.08444 (2020)
2010 – 2019
- 2019
- [j17]Peter J. Thomas
Control theory in biology and medicine - Introduction to the special issue. Biol. Cybern. 113(1-2): 1-6 (2019) - [c10]Gregory R. Hessler, Andrew W. Eckford, Peter J. Thomas
Linear Noise Approximation of Intensity-Driven Signal Transduction Channels. GLOBECOM 2019: 1-6 - [i9]Alexander Cao, Benjamin Lindner, Peter J. Thomas:
A Partial Differential Equation for the Mean-Return-Time Phase of Planar Stochastic Oscillators. CoRR abs/1908.00487 (2019) - [i8]Gregory R. Hessler, Andrew W. Eckford, Peter J. Thomas:
Linear Noise Approximation of Intensity-Driven Signal Transduction Channels. CoRR abs/1908.10897 (2019) - 2018
- [j16]Benjamin Lindner, Peter J. Thomas
Welcome from the new Editor(s)-in-Chief. Biol. Cybern. 112(3): 163 (2018) - [j15]Deena R. Schmidt
Stochastic shielding and edge importance for Markov chains with timescale separation. PLoS Comput. Biol. 14(6) (2018) - [j14]Andrew W. Eckford
The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors. IEEE Trans. Mol. Biol. Multi Scale Commun. 4(1): 27-38 (2018) - [c9]Casey O. Diekman, Peter J. Thomas
Experimental Validation of a Closed-Loop Respiratory Control Model using Dynamic Clamp. EMBC 2018: 5273-5276 - [c8]Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, Peter J. Thomas
Thermodynamic Properties of Molecular Communication. ISIT 2018: 2545-2549 - [i7]Andrew W. Eckford, Peter J. Thomas:
The Channel Capacity of Channelrhodopsin and Other Intensity-Driven Signal Transduction Receptors. CoRR abs/1804.04533 (2018) - [i6]Andrew W. Eckford, Benjamin Kuznets-Speck, Michael Hinczewski, Peter J. Thomas:
Thermodynamic Properties of Molecular Communication. CoRR abs/1805.03535 (2018) - 2017
- [j13]David N. Lyttle, Jeffrey P. Gill
Robustness, flexibility, and sensitivity in a multifunctional motor control model. Biol. Cybern. 111(1): 25-47 (2017) - 2016
- [j12]Peter J. Thomas
Capacity of a Simple Intercellular Signal Transduction Channel. IEEE Trans. Inf. Theory 62(12): 7358-7382 (2016) - [j11]Alexander G. Dimitrov
Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part 1. IEEE Trans. Mol. Biol. Multi Scale Commun. 2(1): 1-4 (2016) - [j10]Alexander G. Dimitrov
Guest Editorial Biological Applications of Information Theory in Honor of Claude Shannon's Centennial - Part II. IEEE Trans. Mol. Biol. Multi Scale Commun. 2(2): 117-119 (2016) - [c7]Andrew W. Eckford, Kenneth A. Loparo
Finite-state channel models for signal transduction in neural systems. ICASSP 2016: 6300-6304 - [c6]Peter J. Thomas
Shannon capacity of signal transduction for multiple independent receptors. ISIT 2016: 1804-1808 - [i5]Peter J. Thomas, Andrew W. Eckford:
Shannon Capacity of Signal Transduction for Multiple Independent Receptors. CoRR abs/1604.03508 (2016) - [i4]Andrew W. Eckford, Peter J. Thomas:
Entropy of the Sum of Two Independent, Non-Identically-Distributed Exponential Random Variables. CoRR abs/1609.02911 (2016) - [i3]Andrew W. Eckford, Kenneth A. Loparo, Peter J. Thomas:
Finite-State Channel Models for Signal Transduction in Neural Systems. CoRR abs/1609.05517 (2016) - 2015
- [j9]Peter J. Thomas
Commentary on Structured chaos shapes spike-response noise entropy in balanced neural networks, by Lajoie, Thivierge, and Shea-Brown. Frontiers Comput. Neurosci. 9: 23 (2015) - [j8]Kendrick M. Shaw, David N. Lyttle, Jeffrey P. Gill
The significance of dynamical architecture for adaptive responses to mechanical loads during rhythmic behavior. J. Comput. Neurosci. 38(1): 25-51 (2015) - [j7]David F. Anderson
Stochastic representations of ion channel kinetics and exact stochastic simulation of neuronal dynamics. J. Comput. Neurosci. 38(1): 67-82 (2015) - [c5]Andrew W. Eckford, Peter J. Thomas
Information theory of intercellular signal transduction. ACSSC 2015: 119-122 - 2013
- [c4]Andrew W. Eckford, Peter J. Thomas
Capacity of a simple intercellular signal transduction channel. ISIT 2013: 1834-1838 - [i2]Andrew W. Eckford, Peter J. Thomas:
Capacity of a Simple Intercellular Signal Transduction Channel. CoRR abs/1305.2245 (2013) - 2012
- [j6]David J. Meyer, Jason Messer, Tanya Singh, Peter J. Thomas
Random local temporal structure of category fluency responses. J. Comput. Neurosci. 32(2): 213-231 (2012) - [j5]J. Vincent Toups, Jean-Marc Fellous, Peter J. Thomas
Multiple Spike Time Patterns Occur at Bifurcation Points of Membrane Potential Dynamics. PLoS Comput. Biol. 8(10) (2012) - [j4]Kendrick M. Shaw, Youngmin Park
Phase Resetting in an Asymptotically Phaseless System: On the Phase Response of Limit Cycles Verging on a Heteroclinic Orbit. SIAM J. Appl. Dyn. Syst. 11(1): 350-391 (2012) - [c3]Casey O. Diekman, Christopher G. Wilson, Peter J. Thomas
Spontaneous autoresuscitation in a model of respiratory control. EMBC 2012: 6669-6672 - 2011
- [j3]J. Vincent Toups, Jean-Marc Fellous, Peter J. Thomas
Finding the Event Structure of Neuronal Spike Trains. Neural Comput. 23(9): 2169-2208 (2011) - 2010
- [i1]Edward K. Agarwala, Hillel J. Chiel, Peter J. Thomas:
Information Maximization Fails to Maximize Expected Utility in a Simple Foraging Model. CoRR abs/1010.4726 (2010)
2000 – 2009
- 2006
- [c2]Joseph M. Kimmel, Richard M. Salter, Peter J. Thomas:
An Information Theoretic Framework for Eukaryotic Gradient Sensing. NIPS 2006: 705-712 - 2003
- [j2]Peter J. Thomas
Reliability and bifurcation in neurons driven by multiple sinusoids. Neurocomputing 52-54: 955-961 (2003) - [c1]Peter J. Thomas, Donald J. Spencer, Sierra K. Hampton, Peter Park, Joseph P. Zurkus:
The Diffusion-Limited Biochemical Signal-Relay Channel. NIPS 2003: 1263-1270 - 2002
- [j1]Paul C. Bressloff, Jack D. Cowan, Martin Golubitsky, Peter J. Thomas
What Geometric Visual Hallucinations Tell Us about the Visual Cortex. Neural Comput. 14(3): 473-491 (2002)
Coauthor Index
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