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Olivier Elemento
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2020 – today
- 2022
- [j15]Matthew Brendel
, Chang Su
Application of Deep Learning on Single-cell RNA Sequencing Data Analysis: A Review. Genom. Proteom. Bioinform. 20(5): 814-835 (2022) - [i1]Matthew Brendel, Chang Su, Zilong Bai, Hao Zhang, Olivier Elemento, Fei Wang:
Application of Deep Learning on Single-Cell RNA-sequencing Data Analysis: A Review. CoRR abs/2210.05677 (2022) - 2020
- [j14]Mengying Sun, Sendong Zhao, Coryandar Gilvary, Olivier Elemento, Jiayu Zhou, Fei Wang:
Graph convolutional networks for computational drug development and discovery. Briefings Bioinform. 21(3): 919-935 (2020) - [j13]Nicola Casiraghi
ABEMUS: platform-specific and data-informed detection of somatic SNVs in cfDNA. Bioinform. 36(9): 2665-2674 (2020) - [j12]Coryandar Gilvary
A machine learning and network framework to discover new indications for small molecules. PLoS Comput. Biol. 16(8) (2020) - [c4]Mengying Sun, Fei Wang, Olivier Elemento, Jiayu Zhou:
Structure-Based Drug-Drug Interaction Detection via Expressive Graph Convolutional Networks and Deep Sets (Student Abstract). AAAI 2020: 13927-13928
2010 – 2019
- 2019
- [j11]Yongjun Zhu
Drug knowledge bases and their applications in biomedical informatics research. Briefings Bioinform. 20(4): 1308-1321 (2019) - [j10]Kevin Michael Boehm
Predicting peptide presentation by major histocompatibility complex class I: an improved machine learning approach to the immunopeptidome. BMC Bioinform. 20(1): 7 (2019) - [j9]Pegah Khosravi
Deep learning enables robust assessment and selection of human blastocysts after in vitro fertilization. npj Digit. Medicine 2 (2019) - 2018
- [c3]Mahboubeh Jannesari, Mehdi Habibzadeh, HamidReza Aboulkheyr, Pegah Khosravi
Breast Cancer Histopathological Image Classification: A Deep Learning Approach. BIBM 2018: 2405-2412 - 2017
- [j8]Alessandro Romanel
EthSEQ: ethnicity annotation from whole exome sequencing data. Bioinform. 33(15): 2402-2404 (2017) - [j7]Linda Huang, Helen Fernandes, Hamid Zia, Peyman Tavassoli, Hanna Rennert, David Pisapia, Marcin Imielinski, Andrea Sboner, Mark A. Rubin
The cancer precision medicine knowledge base for structured clinical-grade mutations and interpretations. J. Am. Medical Informatics Assoc. 24(3): 513-519 (2017) - [j6]Kaitlyn M. Gayvert
A Computational Approach for Identifying Synergistic Drug Combinations. PLoS Comput. Biol. 13(1) (2017) - 2016
- [j5]Andrea Sboner, Olivier Elemento:
A primer on precision medicine informatics. Briefings Bioinform. 17(1): 145-153 (2016) - [p2]Mark A. Carty, Olivier Elemento:
Practical Analysis of Genome Contact Interaction Experiments. Statistical Genomics 2016: 177-189 - 2011
- [j4]Eugenia G. Giannopoulou, Olivier Elemento:
An integrated ChIP-seq analysis platform with customizable workflows. BMC Bioinform. 12: 277 (2011)
2000 – 2009
- 2009
- [j3]Isabelle da Piedade, Man-Hung Eric Tang
DISPARE: DIScriminative PAttern REfinement for Position Weight Matrices. BMC Bioinform. 10: 388 (2009) - 2007
- [p1]Olivier Gascuel, Denis Bertrand, Olivier Elemento:
Reconstructing the duplication history of tandemly repeated sequences. Mathematics of Evolution and Phylogeny 2007 - 2005
- [j2]Olivier Elemento, Olivier Gascuel:
An exact and polynomial distance-based algorithm to reconstruct single copy tandem duplication trees. J. Discrete Algorithms 3(2-4): 362-374 (2005) - [j1]Chang S. Chan, Olivier Elemento, Saeed Tavazoie:
Revealing Posttranscriptional Regulatory Elements Through Network-Level Conservation. PLoS Comput. Biol. 1(7) (2005) - 2003
- [c2]Olivier Elemento, Olivier Gascuel:
An Exact and Polynomial Distance-Based Algorithm to Reconstruct Single Copy Tandem Duplication Trees. CPM 2003: 96-108 - 2002
- [c1]Olivier Elemento, Olivier Gascuel:
An efficient and accurate distance based algorithm to reconstruct tandem duplication trees. ECCB 2002: 92-99
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