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Nir Ben-Tal
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2020 – today
- 2021
- [j28]Michael Bernhofer
, Christian Dallago
PredictProtein - Predicting Protein Structure and Function for 29 Years. Nucleic Acids Res. 49(Webserver-Issue): 535-540 (2021) - 2020
- [j27]Maria Littmann
Validity of machine learning in biology and medicine increased through collaborations across fields of expertise. Nat. Mach. Intell. 2(1): 18-24 (2020)
2010 – 2019
- 2019
- [j26]Ludovica Montanucci
A natural upper bound to the accuracy of predicting protein stability changes upon mutations. Bioinform. 35(9): 1513-1517 (2019) - [j25]Ludovica Montanucci, Emidio Capriotti
DDGun: an untrained method for the prediction of protein stability changes upon single and multiple point variations. BMC Bioinform. 20-S(14): 335:1-335:10 (2019) - 2016
- [j24]Haim Ashkenazy
ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules. Nucleic Acids Res. 44(Webserver-Issue): W344-W350 (2016) - [j23]Matthew A. Oberhardt, Raphy Zarecki, Leah Reshef, Fangfang Xia, Miquel Duran-Frigola
Systems-Wide Prediction of Enzyme Promiscuity Reveals a New Underground Alternative Route for Pyridoxal 5'-Phosphate Production in E. coli. PLoS Comput. Biol. 12(1) (2016) - 2015
- [j22]Aya Narunsky
Using ConTemplate and the PDB to explore conformational space: on the detection of rare protein conformations. BMC Bioinform. 16(S-3): A3 (2015) - [j21]Seren Soner, Pemra Ozbek
DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex's Dynamics. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j20]Aya Narunsky
ConTemplate: exploiting the protein databank to propose ensemble of conformations of a query protein of known structure. BMC Bioinform. 15(S-3): A5 (2014) - [j19]Guy Yachdav, Edda Kloppmann, László Kaján, Maximilian Hecht, Tatyana Goldberg, Tobias Hamp, Peter Hönigschmid, Andrea Schafferhans
PredictProtein - an open resource for online prediction of protein structural and functional features. Nucleic Acids Res. 42(Webserver-Issue): 337-343 (2014) - [j18]Yana Gofman, Charlotta Schärfe, Debora S. Marks, Turkan Haliloglu, Nir Ben-Tal
Structure, Dynamics and Implied Gating Mechanism of a Human Cyclic Nucleotide-Gated Channel. PLoS Comput. Biol. 10(12) (2014) - 2013
- [j17]Nir Ben-Tal
Editorial. Bioinform. 29(13): 1-2 (2013) - 2012
- [j16]James A. R. Dalton
New Model of Cystic Fibrosis Transmembrane Conductance Regulator Proposes Active Channel-like Conformation. J. Chem. Inf. Model. 52(7): 1842-1853 (2012) - [j15]Yana Gofman, Turkan Haliloglu, Nir Ben-Tal
Monte Carlo simulations of peptide-membrane interactions with the MCPep web server. Nucleic Acids Res. 40(Web-Server-Issue): 358-363 (2012) - 2011
- [j14]Gilad Wainreb, Lior Wolf, Haim Ashkenazy
Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site. Bioinform. 27(23): 3286-3292 (2011) - 2010
- [j13]Guy Nimrod, Maya Schushan, András Szilágyi
iDBPs: a web server for the identification of DNA binding proteins. Bioinform. 26(5): 692-693 (2010) - [j12]Matan Kalman, Nir Ben-Tal
Quality assessment of protein model-structures using evolutionary conservation. Bioinform. 26(10): 1299-1307 (2010) - [j11]Gilad Wainreb, Haim Ashkenazy
MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data. Nucleic Acids Res. 38(Web-Server-Issue): 523-528 (2010) - [j10]Haim Ashkenazy
ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids. Nucleic Acids Res. 38(Web-Server-Issue): 529-533 (2010)
2000 – 2009
- 2009
- [j9]Ori Kalid, Nir Ben-Tal
Study of MDM2 Binding to p53-Analogues: Affinity, Helicity, and Applicability to Drug Design. J. Chem. Inf. Model. 49(4): 865-876 (2009) - [j8]Ofir Goldenberg, Elana Erez, Guy Nimrod, Nir Ben-Tal
The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures. Nucleic Acids Res. 37(Database-Issue): 323-327 (2009) - 2008
- [j7]Turkan Haliloglu, Nir Ben-Tal
Cooperative Transition between Open and Closed Conformations in Potassium Channels. PLoS Comput. Biol. 4(8) (2008) - 2007
- [j6]Angela Enosh, Sarel Jacob Fleishman
Prediction and simulation of motion in pairs of transmembrane alpha-helices. Bioinform. 23(2): 212-218 (2007) - [j5]Angelika Fuchs, Antonio J. Martin-Galiano
Co-evolving residues in membrane proteins. Bioinform. 23(24): 3312-3319 (2007) - 2005
- [j4]Roee Gutman, Carine Berezin, Roy Wollman, Yossi Rosenberg, Nir Ben-Tal
QuasiMotiFinder: protein annotation by searching for evolutionarily conserved motif-like patterns. Nucleic Acids Res. 33(Web-Server-Issue): 255-261 (2005) - [j3]Meytal Landau
ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures. Nucleic Acids Res. 33(Web-Server-Issue): 299-302 (2005) - [c3]Guy Nimrod, Fabian Glaser, David Steinberg, Nir Ben-Tal
In silico identification of functional regions in proteins. ISMB (Supplement of Bioinformatics) 2005: 328-337 - 2004
- [j2]Carine Berezin, Fabian Glaser, Josef Rosenberg, Inbal Paz, Tal Pupko
ConSeq: the identification of functionally and structurally important residues in protein sequences. Bioinform. 20(8): 1322-1324 (2004) - [c2]Angela Enosh, Sarel Jacob Fleishman
Assigning transmembrane segments to helices in intermediate-resolution structures. ISMB/ECCB (Supplement of Bioinformatics) 2004: 122-129 - 2003
- [j1]Fabian Glaser, Tal Pupko
ConSurf: Identification of Functional Regions in Proteins by Surface-Mapping of Phylogenetic Information. Bioinform. 19(1): 163-164 (2003) - 2002
- [c1]Tal Pupko, Rachel E. Bell, Itay Mayrose, Fabian Glaser, Nir Ben-Tal:
Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues. ISMB 2002: 71-77
Coauthor Index
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