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Tsuyoshi Hamada
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2010 – 2019
- 2017
- [j9]Reiko Nishihara
, Kimberly Glass
Biomarker correlation network in colorectal carcinoma by tumor anatomic location. BMC Bioinform. 18(1): 304 (2017) - 2016
- [j8]Cheng Ling, Tsuyoshi Hamada, Jing-Yang Gao, Guoguang Zhao
MrBayes tgMC3++: A High Performance and Resource-Efficient GPU-Oriented Phylogenetic Analysis Method. IEEE ACM Trans. Comput. Biol. Bioinform. 13(5): 845-854 (2016) - 2015
- [j7]Shinpei Kato, Eijiro Takeuchi, Yoshio Ishiguro, Yoshiki Ninomiya, Kazuya Takeda, Tsuyoshi Hamada:
An Open Approach to Autonomous Vehicles. IEEE Micro 35(6): 60-68 (2015) - [c17]Cheng Ling, Chunbao Zhou, Arong Luo, Guoguang Zhao
Optimizing the Bayesian Inference of Phylogeny on Graphic Processors. CCGRID 2015: 333-342 - 2014
- [j6]Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec
A GRASS GIS parallel module for radio-propagation predictions. Int. J. Geogr. Inf. Sci. 28(4): 799-823 (2014) - [i2]Lucas Benedicic, Felipe A. Cruz, Tsuyoshi Hamada, Peter Korosec:
A GRASS GIS parallel module for radio-propagation predictions. CoRR abs/1402.4010 (2014) - 2013
- [c16]Peter Berczik
Up to 700k GPU Cores, Kepler, and the Exascale Future for Simulations of Star Clusters Around Black Holes. ISC 2013: 13-25 - 2012
- [j5]Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada:
High performance phylogenetic analysis on CUDA-compatible GPUs. SIGARCH Comput. Archit. News 40(5): 52-57 (2012) - 2011
- [j4]Rio Yokota
Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknowns. Comput. Phys. Commun. 182(6): 1272-1283 (2011) - [j3]Rainer Spurzem, Peter Berczik
Astrophysical particle simulations with large custom GPU clusters on three continents. Comput. Sci. Res. Dev. 26(3-4): 145-151 (2011) - [c15]Lei Liu, Guillermo Marcus Martinez
Astrophysical SPH Simulations with raceSPH Library. CSE 2011: 595-601 - 2010
- [j2]Keisuke Dohi, Yuichiro Shibata, Tsuyoshi Hamada, Tomonari Masada, Kiyoshi Oguri, Duncan A. Buell:
Implementation of a programming environment with a multithread model for reconfigurable systems. SIGARCH Comput. Archit. News 38(4): 40-45 (2010) - [c14]Keisuke Dohi, Khaled Benkrid, Cheng Ling, Tsuyoshi Hamada, Yuichiro Shibata:
Highly efficient mapping of the Smith-Waterman algorithm on CUDA-compatible GPUs. ASAP 2010: 29-36 - [c13]Tsuyoshi Hamada, Keigo Nitadori:
190 TFlops Astrophysical N-body Simulation on a Cluster of GPUs. SC 2010: 1-9 - [i1]Rio Yokota, Tsuyoshi Hamada, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba:
Biomolecular Electrostatics Simulation by an FMM-based BEM on 512 GPUs. CoRR abs/1007.4591 (2010)
2000 – 2009
- 2009
- [j1]Tsuyoshi Hamada, Keigo Nitadori, Khaled Benkrid, Yousuke Ohno, Gentaro Morimoto, Tomonari Masada, Yuichiro Shibata, Kiyoshi Oguri, Makoto Taiji:
A novel multiple-walk parallel algorithm for the Barnes-Hut treecode on GPUs - towards cost effective, high performance N-body simulation. Comput. Sci. Res. Dev. 24(1-2): 21-31 (2009) - [c12]Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri:
Bayesian Multi-topic Microarray Analysis with Hyperparameter Reestimation. ADMA 2009: 253-264 - [c11]Kentaro Matsuo, Tsuyoshi Hamada, Masayuki Miyoshi, Yuichiro Shibata, Kiyoshi Oguri:
Accelerating Phase Correlation Functions Using GPU and FPGA. AHS 2009: 433-438 - [c10]Tsuyoshi Hamada, Khaled Benkrid, Keigo Nitadori, Makoto Taiji:
A Comparative Study on ASIC, FPGAs, GPUs and General Purpose Processors in the O(N^2) Gravitational N-body Simulation. AHS 2009: 447-452 - [c9]Tomonari Masada, Daiji Fukagawa, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri:
Dynamic hyperparameter optimization for bayesian topical trend analysis. CIKM 2009: 1831-1834 - [c8]Tomonari Masada, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri:
Accelerating Collapsed Variational Bayesian Inference for Latent Dirichlet Allocation with Nvidia CUDA Compatible Devices. IEA/AIE 2009: 491-500 - [c7]Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada:
A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs. SASP 2009: 94-100 - [c6]Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota
42 TFlops hierarchical N-body simulations on GPUs with applications in both astrophysics and turbulence. SC 2009 - [c5]Tomonari Masada, Atsuhiro Takasu, Tsuyoshi Hamada, Yuichiro Shibata, Kiyoshi Oguri:
Bag of Timestamps: A Simple and Efficient Bayesian Chronological Mining. APWeb/WAIM 2009: 556-561 - 2005
- [c4]Naohito Nakasato, Tsuyoshi Hamada:
Astrophysical Hydrodynamics Simulations on a Reconfigurable System. FCCM 2005: 279-280 - [c3]Tsuyoshi Hamada, Naohito Nakasato:
Massively Parallel Processors Generator for Reconfigurable System. FCCM 2005: 329-330 - [c2]Tsuyoshi Hamada, Naohito Nakasato:
PGR: A Software Package for Reconfigurable Super-Computing. FPL 2005: 366-373
1990 – 1999
- 1998
- [c1]Tsuyoshi Hamada, Toshiyuki Fukushige, Atsushi Kawai, Junichiro Makino
PROGRAPE-1: A Programmable Special-Purpose Computer for Many-Body Simulations. FCCM 1998: 256-257
Coauthor Index
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