Proteomics and phosphoproteomics in precision medicine: applications and challenges. - Giudice, Girolamo; Petsalaki, Evangelia (Briefings Bioinform., 2019)

Systematic identification of phosphorylation-mediated protein interaction switches. - Betts, Matthew J.; Wichmann, Oliver; Utz, Mathias; Andre, Timon; Petsalaki, Evangelia; Minguez, Pablo; Parca, Luca; Roth, Frederick P.; Gavin, Anne-Claude; Bork, Peer; Russell, Robert B. (PLoS Comput. Biol., 2017)

SELPHI: correlation-based identification of kinase-associated networks from global phospho-proteomics data sets. - Petsalaki, Evangelia; Helbig, Andreas O.; Gopal, Anjali; Pasculescu, Adrian; Roth, Frederick P.; Pawson, Tony (Nucleic Acids Res., 2015)

Protein Domain-Level Landscape of Cancer-Type-Specific Somatic Mutations. - Yang, Fan; Petsalaki, Evangelia; Rolland, Thomas; Hill, David E.; Vidal, Marc; Roth, Frederick P. (PLoS Comput. Biol., 2015)

The identification of short linear motif-mediated interfaces within the human interactome. - Weatheritt, Robert J.; Luck, Katja; Petsalaki, Evangelia; Davey, Norman E.; Gibson, Toby J. (Bioinform., 2012)

PepSite: prediction of peptide-binding sites from protein surfaces. - Trabuco, Leonardo G.; Lise, Stefano; Petsalaki, Evangelia; Russell, Robert B. (Nucleic Acids Res., 2012)

Accurate Prediction of Peptide Binding Sites on Protein Surfaces. - Petsalaki, Evangelia; Stark, Alexander; Urdiales, Eduardo Garcia; Russell, Robert B. (PLoS Comput. Biol., 2009)

SuperTarget and Matador: resources for exploring drug-target relationships. - Günther, Stefan; Kuhn, Michael; Dunkel, Mathias; Campillos, Monica; Senger, Christian; Petsalaki, Evangelia; Ahmed, Jessica; Urdiales, Eduardo Garcia; Gewiess, Andreas; Jensen, Lars Juhl; Schneider, Reinhard; Skoblo, Roman; et al. (Nucleic Acids Res., 2008)

PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization. - Petsalaki, Evangelia; Bagos, Pantelis G.; Litou, Zoi I.; Hamodrakas, Stavros J. (Genom. Proteom. Bioinform., 2006)

N-terminal sequence-based prediction of subcellular location. - Petsalakis, Evangelia; Bagos, Pantelis G.; Litou, Zoi I.; Hamodrakas, Stavros J. (BMC Bioinform., 2005)