Topological deep learning: a review of an emerging paradigm - Ali Zia; Abdelwahed Khamis; James Nichols; Usman Bashir Tayab; Zeeshan Hayder; Vivien Rolland; Eric A. Stone; Lars Petersson (Artif. Intell. Rev., 2024)

Spatial transcriptomics analysis of gene expression prediction using exemplar guided graph neural network - Yan Yang; Md. Zakir Hossain; Eric A. Stone; Shafin Rahman (Pattern Recognit., 2024)

MMCBE: Multi-Modality Dataset for Crop Biomass Estimation and Beyond - Xuesong Li; Zeeshan Hayder; Ali Zia; Connor Cassidy; Shiming Liu; Warwick Stiller; Eric A. Stone; Warren Conaty; Lars Petersson; Vivien Rolland (International Conference on Digital Image Computing: Techniques and Applications, DICTA 2024, Perth, Australia, November 27-29, 2024, 2024)

Spatial Transcriptomics Analysis of Zero-Shot Gene Expression Prediction - Yan Yang; Md. Zakir Hossain; Xuesong Li; Shafin Rahman; Eric A. Stone (Medical Image Computing and Computer Assisted Intervention - MICCAI 2024 - 27th International Conference, Marrakesh, Morocco, October 6-10, 2024, Proceedings, Part IV, 2024)

Convolutional Masked Image Modeling for Dense Prediction Tasks on Pathology Images - Yan Yang; Liyuan Pan; Liu Liu; Eric A. Stone (IEEE/CVF Winter Conference on Applications of Computer Vision, WACV 2024, Waikoloa, HI, USA, January 3-8, 2024, 2024)

Spatial Transcriptomics Analysis of Zero-shot Gene Expression Prediction - Yan Yang; Md. Zakir Hossain; Xuesong Li; Shafin Rahman; Eric A. Stone (CoRR, 2024)

MMCBE: Multi-modality Dataset for Crop Biomass Estimation and Beyond - Xuesong Li; Zeeshan Hayder; Ali Zia; Connor Cassidy; Shiming Liu; Warwick Stiller; Eric A. Stone; Warren Conaty; Lars Petersson; Vivien Rolland (CoRR, 2024)

NeFF-BioNet: Crop Biomass Prediction from Point Cloud to Drone Imagery - Xuesong Li; Zeeshan Hayder; Ali Zia; Connor Cassidy; Shiming Liu; Warwick Stiller; Eric A. Stone; Warren Conaty; Lars Petersson; Vivien Rolland (CoRR, 2024)

Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction - Yan Yang; Md. Zakir Hossain; Eric A. Stone; Shafin Rahman (IEEE/CVF Winter Conference on Applications of Computer Vision, WACV 2023, Waikoloa, HI, USA, January 2-7, 2023, 2023)

ISG: I can See Your Gene Expression - Yan Yang; Liyuan Pan; Liu Liu; Eric A. Stone (33rd British Machine Vision Conference 2022, BMVC 2022, London, UK, November 21-24, 2022, 2022)

Biomass Prediction with 3D Point Clouds from LiDAR - Liyuan Pan; Liu Liu; Anthony G. Condon; Gonzalo M. Estavillo; Robert A. Coe; Geoff Bull; Eric A. Stone; Lars Petersson; Vivien Rolland (IEEE/CVF Winter Conference on Applications of Computer Vision, WACV 2022, Waikoloa, HI, USA, January 3-8, 2022, 2022)

DPST: De Novo Peptide Sequencing with Amino-Acid-Aware Transformers - Yan Yang; Md. Zakir Hossain; Khandaker Asif Ahmed; Liyuan Pan; Shafin Rahman; Eric A. Stone (CoRR, 2022)

Exemplar Guided Deep Neural Network for Spatial Transcriptomics Analysis of Gene Expression Prediction - Yan Yang; Md. Zakir Hossain; Eric A. Stone; Shafin Rahman (CoRR, 2022)

ISG: I can See Your Gene Expression - Yan Yang; Liyuan Pan; Liu Liu; Eric A. Stone (CoRR, 2022)

Structural properties of the minimum cut of partially-supplied graphs - Alexander R. Griffing; Benjamin R. Lynch; Eric A. Stone (Discret. Appl. Math., 2014)

Constructing a meaningful evolutionary average at the phylogenetic center of mass - Eric A. Stone; Arend Sidow (BMC Bioinform., 2007)