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John Boyle
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2010 – 2019
- 2018
- [j14]Peter Corbett, John Boyle
:
Improving the learning of chemical-protein interactions from literature using transfer learning and specialized word embeddings. Database J. Biol. Databases Curation 2018: bay066 (2018) - [j13]Peter Corbett
Chemlistem: chemical named entity recognition using recurrent neural networks. J. Cheminformatics 10(1): 59:1-59:9 (2018) - 2017
- [c7]Zoltán Ádám Mann, Eliot E. Salant, Mike Surridge
Secure Data Processing in the Cloud. ESOCC Workshops 2017: 149-153 - 2012
- [j12]Sarah A. Killcoyne
Interfaces to PeptideAtlas: a case study of standard data access systems. Briefings Bioinform. 13(5): 615-626 (2012) - [j11]John Boyle
Methods for visual mining of genomic and proteomic data atlases. BMC Bioinform. 13: 58 (2012) - [j10]Steven Lewis, Attila Csordas, Sarah A. Killcoyne
Hydra: a scalable proteomic search engine which utilizes the Hadoop distributed computing framework. BMC Bioinform. 13: 324 (2012) - [j9]Ryan Bressler, Jake Lin
Fastbreak: a tool for analysis and visualization of structural variations in genomic data. EURASIP J. Bioinform. Syst. Biol. 2012: 15 (2012) - 2011
- [j8]Theo A. Knijnenburg, Jake Lin
EPEPT: A web service for enhanced P-value estimation in permutation tests. BMC Bioinform. 12: 411 (2011) - 2010
- [j7]David B. Burdick, Christopher C. Cavnor, Jeremy Handcock, Sarah A. Killcoyne
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments. BMC Bioinform. 11: 377 (2010) - [c6]Steven Lewis, Sheila Reynolds, Hector Rovira, Mike O'Leary, Sarah A. Killcoyne
Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data. CloudCom 2010: 776-779 - [c5]Hector Rovira, Sarah A. Killcoyne
An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity. DILS 2010: 179-191
2000 – 2009
- 2009
- [j6]John Boyle
Adaptable data management for systems biology investigations. BMC Bioinform. 10 (2009) - [j5]Sarah A. Killcoyne
Managing Chaos: Lessons Learned Developing Software in the Life Sciences. Comput. Sci. Eng. 11(6): 20-29 (2009) - 2008
- [j4]John Boyle
Systems biology driven software design for the research enterprise. BMC Bioinform. 9 (2008) - 2005
- [j3]John Boyle
Gene-Expression Omnibus integration and clustering Tools in SeqExpress. Bioinform. 21(10): 2550-2551 (2005) - 2004
- [j2]John Boyle
SeqExpress: desktop analysis and visualization tool for gene expression experiments. Bioinform. 20(10): 1649-1650 (2004)
1990 – 1999
- 1996
- [j1]John Boyle
From WIMPS to 3D: The Development of AMAZE. J. Vis. Lang. Comput. 7(3): 291-319 (1996) - 1995
- [c4]John Boyle, Peter M. D. Gray:
The Design of 3D metaphors for Database Visualisation. VDB 1995: 185-202 - 1994
- [c3]John Boyle
Design of a 3D User Interface to a Database. IDS 1994: 127-142 - 1993
- [c2]John Boyle
Database Issues for Data Visualization: Interaction, User Interfaces, and Presentation. Workshop on Database Issues for Data Visualization 1993: 25-34 - [c1]John Boyle
Design of a 3D User Interface to a Database. Workshop on Database Issues for Data Visualization 1993: 173-185
Coauthor Index
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