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Anne E. Thessen
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2020 – today
- 2023
- [j15]Jennifer L. Clarke
, Laurel D. Cooper
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the Agbiodata Consortium. Database J. Biol. Databases Curation 2023 (2023) - [j14]Lauren E. Chan, Anne E. Thessen, William D. Duncan, Nicolas Matentzoglu
The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond. J. Biomed. Semant. 14(1): 3 (2023) - [j13]Anne E. Thessen, Laurel Cooper, Tyson L. Swetnam, Harshad Hegde, Justin T. Reese, Justin Elser, Pankaj Jaiswal
Using knowledge graphs to infer gene expression in plants. Frontiers Artif. Intell. 6 (2023) - [i5]J. Harry Caufield, Tim E. Putman, Kevin Schaper, Deepak R. Unni, Harshad Hegde, Tiffany J. Callahan, Luca Cappelletti
KG-Hub - Building and Exchanging Biological Knowledge Graphs. CoRR abs/2302.10800 (2023) - [i4]Jennifer L. Clarke, Laurel D. Cooper, Monica F. Poelchau, Tanya Z. Berardini, Justin Elser, Andrew D. Farmer, Stephen P. Ficklin, Sunita Kumari, Marie-Angélique Laporte, Rex T. Nelson, Rie Sadohara, Peter Selby, Anne E. Thessen, Brandon Whitehead
Data sharing and ontology use among agricultural genetics, genomics, and breeding databases and resources of the AgBioData Consortium. CoRR abs/2307.08958 (2023) - 2022
- [j12]Nicolas Matentzoglu
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [c5]Lauren E. Chan, Jimmy Phuong, Anne E. Thessen, Stephanie S. Hong, Shahim Essaid, Melissa A. Haendel:
From Survey to Ontology, the Challenges and Opportunities in Ontologizing Questions and Answers. ICBO 2022: 1 - [c4]Anna Maria Masci, Stephanie Holmgren, Charles Schmitt, Rima Habre, Anne E. Thessen, Rebecca Boyles, Carmen J. Marsit:
Environmental Health Language Collaborative (EHLC): a Route to Environmental Health Science Data Harmonization. ICBO 2022: 1-6 - [i3]Deepak R. Unni, Sierra A. T. Moxon, Michael Bada, Matthew H. Brush, Richard M. Bruskiewich, Paul A. Clemons, Vlado Dancík, Michel Dumontier, Karamarie Fecho, Gustavo Glusman
Biolink Model: A Universal Schema for Knowledge Graphs in Clinical, Biomedical, and Translational Science. CoRR abs/2203.13906 (2022) - 2021
- [j11]Lauren E. Chan
The landscape of nutri-informatics: a review of current resources and challenges for integrative nutrition research. Database J. Biol. Databases Curation 2021 (2021) - [c3]Lauren E. Chan, Nicole A. Vasilevsky, Anne E. Thessen, Nicolas Matentzoglu, William D. Duncan, Christopher J. Mungall, Melissa A. Haendel:
A Semantic Model Leveraging Pattern-based Ontology Terms to Bridge Environmental Exposures and Health Outcomes. ICBO 2021: 48-55 - [c2]Marcin P. Joachimiak, Harshad Hegde, William D. Duncan, Justin T. Reese, Luca Cappelletti, Anne E. Thessen, Christopher J. Mungall:
KG-Microbe: A Reference Knowledge-Graph and Platform for Harmonized Microbial Information. ICBO 2021: 131-133 - [i2]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [j10]Quentin Groom
People are essential to linking biodiversity data. Database J. Biol. Databases Curation 2020 (2020) - [j9]Kent A. Shefchek
The Monarch Initiative in 2019: an integrative data and analytic platform connecting phenotypes to genotypes across species. Nucleic Acids Res. 48(Database-Issue): D704-D715 (2020) - [j8]Anne E. Thessen
Transforming the study of organisms: Phenomic data models and knowledge bases. PLoS Comput. Biol. 16(11) (2020)
2010 – 2019
- 2019
- [j7]Anne E. Thessen, Matt Woodburn
Proper Attribution for Curation and Maintenance of Research Collections: Metadata Recommendations of the RDA/TDWG Working Group. Data Sci. J. 18: 54 (2019) - 2018
- [j6]Anne E. Thessen, Jorrit H. Poelen
20 GB in 10 minutes: a case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. PeerJ Comput. Sci. 4: e164 (2018) - [p1]Anne E. Thessen:
Application of Semantic Technology in Biodiversity Science: An Introduction. Application of Semantic Technology in Biodiversity Science 2018: 3-11 - [e1]Anne E. Thessen:
Application of Semantic Technology in Biodiversity Science. Studies on the Semantic Web 33, IOS Press 2018, ISBN 978-1-61499-853-2 [contents] - [i1]Anne E. Thessen
20 GB in 10 minutes: A case for linking major biodiversity databases using an open socio-technical infrastructure and a pragmatic, cross-institutional collaboration. PeerJ Prepr. 6: e26951 (2018) - 2016
- [j5]Anne E. Thessen
Lessons learned while building the Deepwater Horizon Database: Toward improved data sharing in coastal science. Comput. Geosci. 87: 84-90 (2016) - 2014
- [j4]Leo Obrst, Michael Grüninger, Ken Baclawski, Mike Bennett, Dan Brickley, Gary Berg-Cross, Pascal Hitzler, Krzysztof Janowicz, Christine Kapp, Oliver Kutz
Semantic Web and Big Data meets Applied Ontology - The Ontology Summit 2014. Appl. Ontology 9(2): 155-170 (2014) - 2013
- [j3]Matthew S. Mayernik
Data Conservancy Provenance, Context, and Lineage Services: Key Components for Data Preservation and Curation. Data Sci. J. 12: 158-171 (2013) - 2012
- [j2]Anne E. Thessen
Applications of Natural Language Processing in Biodiversity Science. Adv. Bioinformatics 2012: 391574:1-391574:17 (2012) - [j1]Neela Enke, Anne E. Thessen
The user's view on biodiversity data sharing - Investigating facts of acceptance and requirements to realize a sustainable use of research data -. Ecol. Informatics 11: 25-33 (2012) - 2010
- [c1]Ahmed Abdeen Hamed, Byung Suk Lee, Anne E. Thessen
Ecosystems Monitoring: An Information Extraction and Event Processing Scientific Workflow. SERVICES 2010: 302-305
Coauthor Index
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