Deconvolving the contributions of cell-type heterogeneity on cortical gene expression.

Bernard Ng

Ellis Patrick Mariko Taga Ayla Ergün Bernard Ng William Casazza Maria Cimpean Christina Yung Julie A. Schneider David A. Bennett Chris Gaiteri Philip L. De Jager Elizabeth M. Bradshaw Sara Mostafavi Deconvolving the contributions of cell-type heterogeneity on cortical gene expression. 2020 16 PLoS Comput. Biol. 8 https://doi.org/10.1371/journal.pcbi.1008120 https://www.wikidata.org/entity/Q98508220 db/journals/ploscb/ploscb16.html#PatrickTENCCYSB20

Chendi Wang Bernard Ng Rafeef Garbi Multimodal Brain Parcellation Based on Functional and Anatomical Connectivity. 604-617 2018 8 Brain Connect. 10 https://doi.org/10.1089/brain.2017.0576 https://www.wikidata.org/entity/Q93382872 db/journals/brain/brain8.html#WangNG18

Chendi Wang Bernard Ng Rafeef Abugharbieh Multimodal Brain Subnetwork Extraction Using Provincial Hub Guided Random Walks. 287-298 2017 IPMI https://doi.org/10.1007/978-3-319-59050-9_23 conf/ipmi/2017 db/conf/ipmi/ipmi2017.html#WangNA17

Bernard Ng Gaël Varoquaux Jean-Baptiste Poline Michael D. Greicius Bertrand Thirion Transport on Riemannian Manifold for Connectivity-Based Brain Decoding. 208-216 2016 35 IEEE Trans. Medical Imaging 1 https://doi.org/10.1109/TMI.2015.2463723 https://www.wikidata.org/entity/Q40641152 db/journals/tmi/tmi35.html#NgVPGT16

Burak Yoldemir Bernard Ng Rafeef Abugharbieh Stable Overlapping Replicator Dynamics for Brain Community Detection. 529-538 2016 35 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2015.2480864 https://www.wikidata.org/entity/Q40490886 db/journals/tmi/tmi35.html#YoldemirNA16

Chendi Wang Bernard Ng Rafeef Abugharbieh Modularity Reinforcement for Improving Brain Subnetwork Extraction. 132-139 2016 MICCAI (1) https://doi.org/10.1007/978-3-319-46720-7_16 conf/miccai/2016-1 db/conf/miccai/miccai2016-1.html#WangNA16

William R. Shirer Heidi Jiang Collin M. Price Bernard Ng Michael D. Greicius Optimization of rs-fMRI Pre-processing for Enhanced Signal-Noise Separation, Test-Retest Reliability, and Group Discrimination. 67-79 2015 117 NeuroImage https://doi.org/10.1016/j.neuroimage.2015.05.015 https://www.wikidata.org/entity/Q40925825 db/journals/neuroimage/neuroimage117.html#ShirerJPNG15

Bernard Ng Jean-Baptiste Poline Bertrand Thirion Michael D. Greicius Bootstrapped Permutation Test for Multiresponse Inference on Brain Behavior Associations. 113-124 2015 IPMI https://doi.org/10.1007/978-3-319-19992-4_9 https://www.wikidata.org/entity/Q60630867 conf/ipmi/2015 db/conf/ipmi/ipmi2015.html#NgPTG15 Burak Yoldemir Bernard Ng Rafeef Abugharbieh Coupled Stable Overlapping Replicator Dynamics for Multimodal Brain Subnetwork Identification. 770-781 2015 IPMI https://doi.org/10.1007/978-3-319-19992-4_61 https://www.wikidata.org/entity/Q40683060 conf/ipmi/2015 db/conf/ipmi/ipmi2015.html#YoldemirNA15 Bernard Ng Anna-Clare Milazzo André Altmann Node-Based Gaussian Graphical Model for Identifying Discriminative Brain Regions from Connectivity Graphs. 44-51 2015 MLMI https://doi.org/10.1007/978-3-319-24888-2_6 conf/miccai/2015mlmi db/conf/miccai/mlmi2015.html#NgMA15 André Altmann Bernard Ng Joint Feature Extraction from Functional Connectivity Graphs with Multi-task Feature Learning. 29-32 2015 PRNI https://doi.org/10.1109/PRNI.2015.17 https://doi.ieeecomputersociety.org/10.1109/PRNI.2015.17 conf/prni/2015 db/conf/prni/prni2015.html#AltmannN15 Burak Yoldemir Bernard Ng Rafeef Abugharbieh Effects of tractography approach on consistency between anatomical and functional connectivity estimates. 250-253 2014 ISBI https://doi.org/10.1109/ISBI.2014.6867856 conf/isbi/2014 db/conf/isbi/isbi2014.html#YoldemirNA14 Bernard Ng Martin Dressler Gaël Varoquaux Jean-Baptiste Poline Michael D. Greicius Bertrand Thirion Transport on Riemannian Manifold for Functional Connectivity-Based Classification. 405-412 2014 MICCAI (2) https://doi.org/10.1007/978-3-319-10470-6_51 https://www.wikidata.org/entity/Q57317213 conf/miccai/2014-2 db/conf/miccai/miccai2014-2.html#NgDVPGT14 Jonas Richiardi Bernard Ng Recent advances in supervised learning for brain graph classification. 907-910 2013 GlobalSIP https://doi.org/10.1109/GlobalSIP.2013.6737039 https://www.wikidata.org/entity/Q57840413 conf/globalsip/2013 db/conf/globalsip/globalsip2013.html#RichiardiN13 Burak Yoldemir Bernard Ng Todd S. Woodward Rafeef Abugharbieh Fiber Connectivity Integrated Brain Activation Detection. 135-146 2013 IPMI https://doi.org/10.1007/978-3-642-38868-2_12 https://www.wikidata.org/entity/Q47930019 conf/ipmi/2013 db/conf/ipmi/ipmi2013.html#YoldemirNWA13 Bernard Ng Gaël Varoquaux Jean-Baptiste Poline Bertrand Thirion A Novel Sparse Group Gaussian Graphical Model for Functional Connectivity Estimation. 256-267 2013 IPMI https://doi.org/10.1007/978-3-642-38868-2_22 https://www.wikidata.org/entity/Q48237355 conf/ipmi/2013 db/conf/ipmi/ipmi2013.html#NgVPT13 Bernard Ng Gaël Varoquaux Jean-Baptiste Poline Bertrand Thirion Implications of Inconsistencies between fMRI and dMRI on Multimodal Connectivity Estimation. 652-659 2013 MICCAI (3) https://doi.org/10.1007/978-3-642-40760-4_81 https://www.wikidata.org/entity/Q57317220 conf/miccai/2013-3 db/conf/miccai/miccai2013-3.html#NgVPT13 Burak Yoldemir Bernard Ng Rafeef Abugharbieh Overlapping Replicator Dynamics for Functional Subnetwork Identification. 682-689 2013 MICCAI (2) https://doi.org/10.1007/978-3-642-40763-5_84 https://www.wikidata.org/entity/Q87377858 conf/miccai/2013-2 db/conf/miccai/miccai2013-2.html#YoldemirNA13

Bernard Ng Martin J. McKeown Rafeef Abugharbieh Group Replicator Dynamics: A Novel Group-Wise Evolutionary Approach for Sparse Brain Network Detection. 576-585 2012 31 IEEE Trans. Medical Imaging 3 https://doi.org/10.1109/TMI.2011.2173699 https://www.wikidata.org/entity/Q60767163 db/journals/tmi/tmi31.html#NgMA12

Bernard Ng Ghassan Hamarneh Rafeef Abugharbieh Modeling Brain Activation in fMRI Using Group MRF. 1113-1123 2012 31 IEEE Trans. Medical Imaging 5 https://doi.org/10.1109/TMI.2012.2185943 https://www.wikidata.org/entity/Q44600157 db/journals/tmi/tmi31.html#NgHA12

Burak Yoldemir Bernard Ng Rafeef Abugharbieh Deconfounding the Effects of Resting State Activity on Task Activation Detection in fMRI. 51-60 2012 MBIA https://doi.org/10.1007/978-3-642-33530-3_5 conf/miccai/2012mbia db/conf/miccai/mbia2012.html#YoldemirNA12 Bernard Ng Gaël Varoquaux Jean-Baptiste Poline Bertrand Thirion A Novel Sparse Graphical Approach for Multimodal Brain Connectivity Inference. 707-714 2012 MICCAI (1) https://doi.org/10.1007/978-3-642-33415-3_87 https://www.wikidata.org/entity/Q85833821 conf/miccai/2012-1 db/conf/miccai/miccai2012-1.html#NgVPT12 Bernard Ng Viviana Siless Gaël Varoquaux Jean-Baptiste Poline Bertrand Thirion Rafeef Abugharbieh Connectivity-informed Sparse Classifiers for fMRI Brain Decoding. 101-104 2012 PRNI https://doi.org/10.1109/PRNI.2012.11 https://doi.ieeecomputersociety.org/10.1109/PRNI.2012.11 https://www.wikidata.org/entity/Q57317228 conf/prni/2012 db/conf/prni/prni2012.html#NgSVPTA12 Bernard Ng Rafeef Abugharbieh Generalized group sparse classifiers with application in fMRI brain decoding. 1065-1071 2011 CVPR https://doi.org/10.1109/CVPR.2011.5995651 https://doi.ieeecomputersociety.org/10.1109/CVPR.2011.5995651 conf/cvpr/2011 db/conf/cvpr/cvpr2011.html#NgA11 Bernard Ng Rafeef Abugharbieh Generalized Sparse Regularization with Application to fMRI Brain Decoding. 612-623 2011 IPMI https://doi.org/10.1007/978-3-642-22092-0_50 https://www.wikidata.org/entity/Q49044866 conf/ipmi/2011 db/conf/ipmi/ipmi2011.html#NgA11 Bernard Ng Rafeef Abugharbieh Gaël Varoquaux Jean-Baptiste Poline Bertrand Thirion Connectivity-Informed fMRI Activation Detection. 285-292 2011 MICCAI (2) https://doi.org/10.1007/978-3-642-23629-7_35 https://www.wikidata.org/entity/Q57317245 conf/miccai/2011-2 db/conf/miccai/miccai2011-2.html#NgAVPT11 Bernard Ng Rafeef Abugharbieh Modeling Spatiotemporal Structure in fMRI Brain Decoding Using Generalized Sparse Classifiers. 65-68 2011 PRNI https://doi.org/10.1109/PRNI.2011.10 https://doi.ieeecomputersociety.org/10.1109/PRNI.2011.10 conf/prni/2011 db/conf/prni/prni2011.html#NgA11 Bernard Ng Rafeef Abugharbieh Ghassan Hamarneh Group MRF for fMRI activation detection. 2887-2894 2010 CVPR https://doi.org/10.1109/CVPR.2010.5540026 https://doi.ieeecomputersociety.org/10.1109/CVPR.2010.5540026 https://www.wikidata.org/entity/Q61905718 conf/cvpr/2010 db/conf/cvpr/cvpr2010.html#NgAH10 Bernard Ng Arash Vahdat Ghassan Hamarneh Rafeef Abugharbieh Generalized Sparse Classifiers for Decoding Cognitive States in fMRI. 108-115 2010 MLMI https://doi.org/10.1007/978-3-642-15948-0_14 https://www.wikidata.org/entity/Q61905716 conf/miccai/2010mlmi db/conf/miccai/mlmi2010.html#NgVHA10 Bernard Ng Ghassan Hamarneh Rafeef Abugharbieh Detecting Brain Activation in fMRI Using Group Random Walker. 331-338 2010 MICCAI (2) https://doi.org/10.1007/978-3-642-15745-5_41 https://www.wikidata.org/entity/Q61905712 conf/miccai/2010-2 db/conf/miccai/miccai2010-2.html#NgHA10

Bernard Ng Rafeef Abugharbieh Xuemei Huang 0002 Martin J. McKeown Spatial Characterization of fMRI Activation Maps Using Invariant 3-D Moment Descriptors. 261-268 2009 28 IEEE Trans. Medical Imaging 2 https://doi.org/10.1109/TMI.2008.929097 https://www.wikidata.org/entity/Q48770889 db/journals/tmi/tmi28.html#NgA0M09

Bernard Ng Rafeef Abugharbieh Martin J. McKeown Discovering Sparse Functional Brain Networks Using Group Replicator Dynamics (GRD). 76-87 2009 IPMI https://doi.org/10.1007/978-3-642-02498-6_7 https://www.wikidata.org/entity/Q60767248 conf/ipmi/2009 db/conf/ipmi/ipmi2009.html#NgAM09 Bernard Ng Rafeef Abugharbieh Martin J. McKeown Detecting Maximal Directional Changes in Spatial fMRI Response Using Canonical Correlation Analysis. 650-653 2009 ISBI https://doi.org/10.1109/ISBI.2009.5193131 https://www.wikidata.org/entity/Q60767242 conf/isbi/2009 db/conf/isbi/isbi2009.html#NgAM09 Bernard Ng Rafeef Abugharbieh Martin J. McKeown Functional Segmentation of fMRI Data Using Adaptive Non-negative Sparse PCA (ANSPCA). 490-497 2009 MICCAI (1) https://doi.org/10.1007/978-3-642-04271-3_60 https://www.wikidata.org/entity/Q60767260 conf/miccai/2009-2 db/conf/miccai/miccai2009-2.html#NgAM09 Bernard Ng Rafeef Abugharbieh Martin J. McKeown Inferring functional connectivity using spatial modulation measures of fMRI signals within brain regions of interest. 572-575 2008 ISBI https://doi.org/10.1109/ISBI.2008.4541060 https://www.wikidata.org/entity/Q60767296 conf/isbi/2008 db/conf/isbi/isbi2008.html#NgAM08 Bernard Ng Rafeef Abugharbieh Samantha J. Palmer Martin J. McKeown Characterizing Task-Related Temporal Dynamics of Spatial Activation Distributions in fMRI BOLD Signals. 767-774 2007 conf/miccai/2007-1 MICCAI (1) https://doi.org/10.1007/978-3-540-75757-3_93 https://www.wikidata.org/entity/Q80126689 db/conf/miccai/miccai2007-1.html#NgAPM07 Bernard Ng Rafeef Abugharbieh Xuemei Huang 0002 Martin J. McKeown Characterizing fMRI Activations within Regions of Interest (ROIs) Using 3D Moment Invariants. 63 2006 CVPR Workshops https://doi.org/10.1109/CVPRW.2006.52 https://doi.ieeecomputersociety.org/10.1109/CVPRW.2006.52 https://www.wikidata.org/entity/Q60767369 conf/cvpr/2006w db/conf/cvpr/cvprw2006.html#NgAHM06 Rafeef Abugharbieh André Altmann David A. Bennett Elizabeth M. Bradshaw William Casazza Maria Cimpean Martin Dressler Ayla Ergün Christopher GaiteriChris Gaiteri Rafeef Garbi Michael D. Greicius Ghassan Hamarneh Xuemei Huang 0002 Philip L. De Jager Heidi Jiang Martin J. McKeown Anna-Clare Milazzo Sara Mostafavi Samantha J. Palmer Ellis Patrick Jean-Baptiste Poline Collin M. Price Jonas Richiardi Julie A. Schneider William R. Shirer Viviana Siless Mariko Taga Bertrand Thirion Arash Vahdat Gaël Varoquaux Chendi Wang Todd S. Woodward Burak Yoldemir Christina Yung