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Joaquín Tárraga
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2010 – 2019
- 2018
- [j22]Héctor Martínez
, Sergio Barrachina
A framework for genomic sequencing on clusters of multicore and manycore processors. Int. J. High Perform. Comput. Appl. 32(3): 393-406 (2018) - 2017
- [j21]Ricardo Olanda
A new parallel pipeline for DNA methylation analysis of long reads datasets. BMC Bioinform. 18(1): 161:1-161:6 (2017) - [j20]José M. Juanes, Asunción Gallego, Joaquín Tárraga, Felipe J. Chaves
VISMapper: ultra-fast exhaustive cartography of viral insertion sites for gene therapy. BMC Bioinform. 18(1): 421:1-421:5 (2017) - [j19]Javier López, Jacobo Coll, Matthias Haimel
HGVA: the Human Genome Variation Archive. Nucleic Acids Res. 45(Webserver-Issue): W189-W194 (2017) - 2016
- [j18]Joaquín Tárraga, Asunción Gallego, Vicente Arnau
HPG pore: an efficient and scalable framework for nanopore sequencing data. BMC Bioinform. 17: 107 (2016) - 2015
- [j17]Joaquín Tárraga, Mariano Pérez
A parallel and sensitive software tool for methylation analysis on multicore platforms. Bioinform. 31(19): 3130-3138 (2015) - [j16]Roberto Alonso, Francisco Salavert, Francisco García-García
Babelomics 5.0: functional interpretation for new generations of genomic data. Nucleic Acids Res. 43(Webserver-Issue): W117-W121 (2015) - [j15]Héctor Martínez
Concurrent and Accurate Short Read Mapping on Multicore Processors. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 995-1007 (2015) - [c2]Héctor Martínez
Scalable RNA Sequencing on Clusters of Multicore Processors. TrustCom/BigDataSE/ISPA (3) 2015: 190-195 - 2014
- [j14]Joaquín Tárraga, Vicente Arnau
Acceleration of short and long DNA read mapping without loss of accuracy using suffix array. Bioinform. 30(23): 3396-3398 (2014) - 2013
- [c1]Héctor Martínez
A dynamic pipeline for RNA sequencing on multicore processors. EuroMPI 2013: 235-240 - [i1]Héctor Martínez, Joaquín Tárraga, Ignacio Medina, Sergio Barrachina, Maribel Castillo, Joaquín Dopazo, Enrique S. Quintana-Ortí:
Concurrent and Accurate RNA Sequencing on Multicore Platforms. CoRR abs/1304.0681 (2013) - 2012
- [j13]Marta Bleda
CellBase, a comprehensive collection of RESTful web services for retrieving relevant biological information from heterogeneous sources. Nucleic Acids Res. 40(Web-Server-Issue): 609-614 (2012) - [j12]José Salavert Torres
Using GPUs for the Exact Alignment of Short-Read Genetic Sequences by Means of the Burrows-Wheeler Transform. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1245-1256 (2012) - 2011
- [j11]Rubén Sánchez
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j10]Ignacio Medina
Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling. Nucleic Acids Res. 38(Web-Server-Issue): 210-213 (2010)
2000 – 2009
- 2009
- [j9]Ignacio Medina
Gene set-based analysis of polymorphisms: finding pathways or biological processes associated to traits in genome-wide association studies. Nucleic Acids Res. 37(Web-Server-Issue): 340-344 (2009) - 2008
- [j8]Joaquín Tárraga, Ignacio Medina
GEPAS, a web-based tool for microarray data analysis and interpretation. Nucleic Acids Res. 36(Web-Server-Issue): 308-314 (2008) - [j7]Fátima Al-Shahrour, José Carbonell
Babelomics: advanced functional profiling of transcriptomics, proteomics and genomics experiments. Nucleic Acids Res. 36(Web-Server-Issue): 341-346 (2008) - 2007
- [j6]Ignacio Medina
Prophet, a web-based tool for class prediction using microarray data. Bioinform. 23(3): 390-391 (2007) - [j5]Joaquín Tárraga, Ignacio Medina
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Res. 35(Web-Server-Issue): 38-42 (2007) - [j4]Lucía Conde
ISACGH: a web-based environment for the analysis of Array CGH and gene expression which includes functional profiling. Nucleic Acids Res. 35(Web-Server-Issue): 81-85 (2007) - [j3]Fátima Al-Shahrour, Pablo Minguez
FatiGO +: a functional profiling tool for genomic data. Integration of functional annotation, regulatory motifs and interaction data with microarray experiments. Nucleic Acids Res. 35(Web-Server-Issue): 91-96 (2007) - 2006
- [j2]Fátima Al-Shahrour, Pablo Minguez
BABELOMICS: a systems biology perspective in the functional annotation of genome-scale experiments. Nucleic Acids Res. 34(Web-Server-Issue): 472-476 (2006) - [j1]David Montaner
Next station in microarray data analysis: GEPAS. Nucleic Acids Res. 34(Web-Server-Issue): 486-491 (2006)
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