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Jed A. Fuhrman
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2020 – today
- 2024
- [i1]Wenxuan Zuo, Zifan Zhu, Yuxuan Du, Yi-Chun Yeh, Jed A. Fuhrman, Jinchi Lv, Yingying Fan, Fengzhu Sun:
DeepLINK-T: deep learning inference for time series data using knockoffs and LSTM. CoRR abs/2404.04317 (2024) - 2022
- [j12]Yuxuan Du
, Sarah M. Laperriere, Jed A. Fuhrman
Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression. J. Comput. Biol. 29(2): 106-120 (2022) - 2021
- [j11]Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu:
Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences. Briefings Bioinform. 22(1): 611 (2021) - 2020
- [j10]Ziye Wang, Ying Wang, Jed A. Fuhrman, Fengzhu Sun, Shanfeng Zhu
Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences. Briefings Bioinform. 21(3): 777-790 (2020) - [j9]Jie Ren, Kai Song, Chao Deng, Nathan A. Ahlgren
Identifying viruses from metagenomic data using deep learning. Quant. Biol. 8(1): 64-77 (2020)
2010 – 2019
- 2017
- [j8]Yang Young Lu, Ting Chen, Jed A. Fuhrman
COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge. Bioinform. 33(6): 791-798 (2017) - [j7]Mengge Zhang, Lianping Yang
Prediction of virus-host infectious association by supervised learning methods. BMC Bioinform. 18(S-3): 143-154 (2017) - [j6]Yang Young Lu, Kujin Tang, Jie Ren, Jed A. Fuhrman
CAFE: aCcelerated Alignment-FrEe sequence analysis. Nucleic Acids Res. 45(Webserver-Issue): W554-W559 (2017) - 2015
- [j5]Li C. Xia
Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains. BMC Bioinform. 16: 301:1-301:14 (2015) - 2013
- [j4]Li C. Xia
Efficient statistical significance approximation for local similarity analysis of high-throughput time series data. Bioinform. 29(2): 230-237 (2013) - 2011
- [j3]Li C. Xia
Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates. BMC Syst. Biol. 5(S-2): S15 (2011)
2000 – 2009
- 2006
- [j2]Quansong Ruan, Joshua A. Steele
A dynamic programming algorithm for binning microbial community profiles. Bioinform. 22(12): 1508-1514 (2006) - [j1]Quansong Ruan, Debojyoti Dutta, Michael S. Schwalbach, Joshua A. Steele
Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors. Bioinform. 22(20): 2532-2538 (2006)
Coauthor Index
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