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Mihai Pop
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- affiliation: University of Maryland, College Park, USA
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2020 – today
- 2024
- [j36]Seth Commichaux
, Tu Luan, Harihara Subrahmaniam Muralidharan, Mihai Pop
Database size positively correlates with the loss of species-level taxonomic resolution for the 16S rRNA and other prokaryotic marker genes. PLoS Comput. Biol. 20(8): 1012343 (2024) - 2023
- [j35]Kiran Javkar
PRAWNS: compact pan-genomic features for whole-genome population genomics. Bioinform. 39(1) (2023) - 2022
- [c26]Horatiu Florian, Camelia Avram, Mihai Pop, Adrian Mocanu, Dan Radu, Adina Astilean:
Probabilistic Petri Nets Model for Assessing Temporal Variations of the Number of Bikes in Bike-Sharing Stations. AQTR 2022: 1-5 - [c25]Brook Stacy, Jason Hauzel, Mikael Lindvall, Adam A. Porter, Mihai Pop
Metamorphic Testing in Bioinformatics Software: A Case Study on Metagenomic Assembly. MET@ICSE 2022: 31-33 - 2021
- [j34]Nidhi Shah
TIPP2: metagenomic taxonomic profiling using phylogenetic markers. Bioinform. 37(13): 1839-1845 (2021) - [j33]Seth Commichaux
A critical assessment of gene catalogs for metagenomic analysis. Bioinform. 37(18): 2848-2857 (2021) - [j32]Paul Medvedev, Mihai Pop
What do Eulerian and Hamiltonian cycles have to do with genome assembly? PLoS Comput. Biol. 17(5) (2021) - 2020
- [c24]Horatiu Florian, Mihai Pop, Camelia Avram, Adina Astilean:
Similarity measure for station clustering in bike sharing systems. AQTR 2020: 1-5 - [c23]Keith Mitchell, Jaqueline J. Brito, Igor Mandric, Qiaozhen Wu, Sergey Knyazev, Sei Chang, Lana S. Martin, Aaron Karlsberg, Ekaterina Gerasimov, Russell Littman, Brian L. Hill, Nicholas C. Wu, Harry (Taegyun) Yang, Kevin Hsieh, Linus Chen, Eli Littman, Taylor Shabani, German Enik, Douglas Yao, Ren Sun, Jan Schroeder, Eleazar Eskin, Alex Zelikovsky, Pavel Skums, Mihai Pop, Serghei Mangul:
Benchmarking of computational error-correction methods for next-generation sequencing data. BCB 2020: 63:1
2010 – 2019
- 2019
- [j31]Nathan D. Olson
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes. Briefings Bioinform. 20(4): 1140-1150 (2019) - [j30]Nidhi Shah, Michael G. Nute, Tandy J. Warnow
Misunderstood parameter of NCBI BLAST impacts the correctness of bioinformatics workflows. Bioinform. 35(9): 1613-1614 (2019) - [j29]Jay Ghurye
Modern technologies and algorithms for scaffolding assembled genomes. PLoS Comput. Biol. 15(6) (2019) - [j28]Jay Ghurye
Integrating Hi-C links with assembly graphs for chromosome-scale assembly. PLoS Comput. Biol. 15(8) (2019) - [c22]Dreycey Albin, Pravin Muthu, Gene Godbold
SeqScreen: a biocuration platform for robust taxonomic and biological process characterization of nucleic acid sequences of interest. BIBM 2019: 1729-1736 - 2018
- [j27]Nidhi Shah, Stephen F. Altschul, Mihai Pop
Outlier detection in BLAST hits. Algorithms Mol. Biol. 13(1): 7:1-7:9 (2018) - [e3]Amarda Shehu, Cathy H. Wu, Christina Boucher, Jing Li, Hongfang Liu, Mihai Pop:
Proceedings of the 2018 ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics, BCB 2018, Washington, DC, USA, August 29 - September 01, 2018. ACM 2018 [contents] - 2017
- [c21]Adina Astilean, Camelia Avram, Ramona Bolboaca, Valentin Sita, Mihai Pop:
Events based advanced control strategy for urban street lighting. ICE/ITMC 2017: 377-382 - [c20]Mihai Pop, Adrian Sabou:
Gesture-based Visual Analytics in Virtual Reality. RoCHI 2017: 101-106 - [c19]Brian Brubach, Jay Ghurye, Mihai Pop, Aravind Srinivasan:
Better Greedy Sequence Clustering with Fast Banded Alignment. WABI 2017: 3:1-3:13 - [c18]Nidhi Shah, Stephen F. Altschul, Mihai Pop:
Outlier Detection in BLAST Hits. WABI 2017: 23:1-23:11 - 2016
- [j26]Lee Mendelowitz, David C. Schwartz, Mihai Pop
Maligner: a fast ordered restriction map aligner. Bioinform. 32(7): 1016-1022 (2016) - [c17]Mihai Pop, Mirela Dobra
Two stage scheduling method of touristic transport in multimodal networks. AQTR 2016: 1-5 - [c16]Amelia Bateman, Todd J. Treangen, Mihai Pop
Limitations of Current Approaches for Reference-Free, Graph-Based Variant Detection. BCB 2016: 499-500 - [c15]Jay Ghurye, Mihai Pop
Better Identification of Repeats in Metagenomic Scaffolding. WABI 2016: 174-184 - [i3]Gene Myers, Mihai Pop
Next Generation Sequencing (Dagstuhl Seminar 16351). Dagstuhl Reports 6(8): 91-130 (2016) - 2015
- [j25]Mihai Pop
Use and mis-use of supplementary material in science publications. BMC Bioinform. 16: 237:1-237:4 (2015) - [c14]Mihai Pop
Computational challenges in microbiome research. BIBM 2015: 2 - [e2]Mihai Pop
Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings. Lecture Notes in Computer Science 9289, Springer 2015, ISBN 978-3-662-48220-9 [contents] - 2014
- [j24]Nam-phuong Nguyen
TIPP: taxonomic identification and phylogenetic profiling. Bioinform. 30(24): 3548-3555 (2014) - [j23]Sergey Koren
Automated ensemble assembly and validation of microbial genomes. BMC Bioinform. 15: 126 (2014) - 2013
- [j22]Michael C. Schatz, Adam M. Phillippy
Hawkeye and AMOS: visualizing and assessing the quality of genome assemblies. Briefings Bioinform. 14(2): 213-224 (2013) - [j21]Jurgen F. Nijkamp, Mihai Pop
Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold. Bioinform. 29(22): 2826-2834 (2013) - [c13]Christopher Michael Hill, Irina Astrovskaya, Howard Huang, Sergey Koren, Atif Memon, Todd J. Treangen, Mihai Pop
De novo likelihood-based measures for comparing metagenomic assemblies. BIBM 2013: 94-98 - [c12]Christopher Michael Hill, Carl H. Albach, Sebastian Angel, Mihai Pop
K-mulus: Strategies for BLAST in the Cloud. PPAM (2) 2013: 237-246 - 2012
- [j20]Henry C. Lin, Steve Goldstein, Lee Mendelowitz, Shiguo Zhou, Joshua L. Wetzel
AGORA: Assembly Guided by Optical Restriction Alignment. BMC Bioinform. 13: 189 (2012) - [j19]Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon
Exploiting sparseness in de novo genome assembly. BMC Bioinform. 13(S-6): S1 (2012) - [j18]Dirk Gevers, Mihai Pop
Bioinformatics for the Human Microbiome Project. PLoS Comput. Biol. 8(11) (2012) - [j17]Mihai Pop:
Review of parallel algorithms by Henri Casanova, Arnaud Legrand, and Yves Robert. SIGACT News 43(2): 11-14 (2012) - [c11]Bo Liu, Mihai Pop
Workshop: Comparative assembly of metagenomic sequences. ICCABS 2012: 1 - [e1]Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge:
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-1320-9 [contents] - 2011
- [j16]Sergey Koren
Bambus 2: scaffolding metagenomes. Bioinform. 27(21): 2964-2971 (2011) - [j15]Joshua L. Wetzel
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies. BMC Bioinform. 12: 95 (2011) - [j14]Mohammadreza Ghodsi, Bo Liu, Mihai Pop
DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC Bioinform. 12: 271 (2011) - [c10]Mihai Pop
Invited: Challenges in metagenomic assembly. ICCABS 2011: 9 - [c9]Mihai Pop
Workshop: Can you assemble whole genomes from next generation sequencing data? ICCABS 2011: 273 - [i2]Chengxi Ye, Zhanshan (Sam) Ma, Charles H. Cannon, Mihai Pop, Douglas W. Yu:
SparseAssembler: de novo Assembly with the Sparse de Bruijn Graph. CoRR abs/1106.2603 (2011) - [i1]Chengxi Ye, Charles H. Cannon, Zhanshan (Sam) Ma, Douglas W. Yu, Mihai Pop:
SparseAssembler2: Sparse k-mer Graph for Memory Efficient Genome Assembly. CoRR abs/1108.3556 (2011) - 2010
- [j13]Carl Kingsford, Michael C. Schatz
Assembly complexity of prokaryotic genomes using short reads. BMC Bioinform. 11: 21 (2010) - [j12]James Robert White, Saket Navlakha, Niranjan Nagarajan
Alignment and clustering of phylogenetic markers - implications for microbial diversity studies. BMC Bioinform. 11: 152 (2010) - [j11]Saket Navlakha, James Robert White, Niranjan Nagarajan
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. J. Comput. Biol. 17(3): 503-516 (2010) - [c8]Bo Liu, Theodore Gibbons, Mohammadreza Ghodsi, Mihai Pop
MetaPhyler: Taxonomic profiling for metagenomic sequences. BIBM 2010: 95-100 - [c7]Bo Liu, Mihai Pop
Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets. ISBRA 2010: 101-112
2000 – 2009
- 2009
- [j10]Mihai Pop
Genome assembly reborn: recent computational challenges. Briefings Bioinform. 10(4): 354-366 (2009) - [j9]Niranjan Nagarajan
Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. J. Comput. Biol. 16(7): 897-908 (2009) - [j8]Bo Liu, Mihai Pop
ARDB - Antibiotic Resistance Genes Database. Nucleic Acids Res. 37(Database-Issue): 443-447 (2009) - [j7]James Robert White, Niranjan Nagarajan
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput. Biol. 5(4) (2009) - [c6]Mohammadreza Ghodsi, Mihai Pop
Inexact Local Alignment Search over Suffix Arrays. BIBM 2009: 83-87 - [c5]Saket Navlakha, James Robert White, Niranjan Nagarajan
Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. RECOMB 2009: 400-417 - 2008
- [j6]James Robert White, Michael Roberts, James A. Yorke, Mihai Pop
Figaro: a novel statistical method for vector sequence removal. Bioinform. 24(4): 462-467 (2008) - [j5]Niranjan Nagarajan
Scaffolding and validation of bacterial genome assemblies using optical restriction maps. Bioinform. 24(10): 1229-1235 (2008) - 2007
- [j4]Daniel D. Sommer, Arthur L. Delcher, Steven L. Salzberg
Minimus: a fast, lightweight genome assembler. BMC Bioinform. 8 (2007) - 2004
- [j3]Mihai Pop
Shotgun Sequence Assembly. Adv. Comput. 60: 193-248 (2004) - [j2]Mihai Pop
Comparative genome assembly. Briefings Bioinform. 5(3): 237-248 (2004) - 2002
- [j1]Mihai Pop
Genome Sequence Assembly: Algorithms and Issues. Computer 35(7): 47-54 (2002) - 2001
- [c4]Mihai Pop
Efficient perspective-accurate silhouette computation and applications. SCG 2001: 60-68
1990 – 1999
- 1999
- [c3]Gill Barequet, Christian A. Duncan, Michael T. Goodrich, Subodh Kumar, Mihai Pop
Efficient Perspective-Accurate Silhouette Computation. SCG 1999: 417-418 - 1998
- [c2]S. Rao Kosaraju, Mihai Pop:
De-amortization of Algorithms. COCOON 1998: 4-14 - [c1]Alok Aggarwal, S. Rao Kosaraju, Mihai Pop:
Drawing of Two-Dimensional Irregular Meshes. GD 1998: 1-14
Coauthor Index
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last updated on 2024-12-02 21:31 CET by the dblp team
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