• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 150 matches

• 2022
• 
  Andrew Chatr-aryamontri, Lynette Hirschman, Karen E. Ross, Rose Oughtred, Martin Krallinger, Kara Dolinski, Mike Tyers, Tonia Korves, Cecilia N. Arighi:
  Overview of the COVID-19 text mining tool interactive demonstration track in BioCreative VII. Database J. Biol. Databases Curation 2022(2022) (2022)
• 
  Graciela Gonzalez-Hernandez, Martin Krallinger, Monica A. Muñoz, Raul Rodriguez-Esteban, Özlem Uzuner, Lynette Hirschman:
  Challenges and opportunities for mining adverse drug reactions: perspectives from pharma, regulatory agencies, healthcare providers and consumers. Database J. Biol. Databases Curation 2022(2022) (2022)
• 
  Matthew Peterson, Tonia Korves, Christopher Garay, Robyn Kozierok, Lynette Hirschman:
  Final Report on MITRE Evaluations for the DARPA Big Mechanism Program. CoRR abs/2211.03943 (2022)
• 2021
• 
  Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson:
  Assessing Open-Ended Human-Computer Collaboration Systems: Applying a Hallmarks Approach. Frontiers Artif. Intell. 4: 670009 (2021)
• 
  Robyn Kozierok, John S. Aberdeen, Cheryl Clark, Christopher D. Garay, Bradley Goodman, Tonia Korves, Lynette Hirschman, Patricia L. McDermott, Matthew W. Peterson:
  Hallmarks of Human-Machine Collaboration: A framework for assessment in the DARPA Communicating with Computers Program. CoRR abs/2102.04958 (2021)
• 2020
• 
  David S. Carrell, Bradley A. Malin, David J. Cronkite, John S. Aberdeen, Cheryl Clark, Muqun (Rachel) Li, Dikshya Bastakoty, Steve Nyemba, Lynette Hirschman:
  Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers. J. Am. Medical Informatics Assoc. 27(9): 1374-1382 (2020)
• 2019
• 
  David S. Carrell, David J. Cronkite, Muqun (Rachel) Li, Steve Nyemba, Bradley A. Malin, John S. Aberdeen, Lynette Hirschman:
  The machine giveth and the machine taketh away: a parrot attack on clinical text deidentified with hiding in plain sight. J. Am. Medical Informatics Assoc. 26(12): 1536-1544 (2019)
• 2018
• 
  Stéphane M. Meystre, David S. Carrell, Lynette Hirschman, John S. Aberdeen, Paul Fearn, Valentina Petkov, Jonathan C. Silverstein:
  Automatic Text De-Identification: How and When is it Acceptable? AMIA 2018
• 2016
• 
  Lynette Hirschman, Karën Fort, Stéphanie Boué, Nikos Kyrpides, Rezarta Islamaj Dogan, Kevin Bretonnel Cohen:
  Crowdsourcing and curation: perspectives from biology and natural language processing. Database J. Biol. Databases Curation 2016 (2016)
• 
  Qinghua Wang, Shabbir Syed-Abdul, Lara Almeida, Sophia Ananiadou, Yalbi I. Balderas-Martínez, Riza Batista-Navarro, David Campos, Lucy Chilton, Hui-Jou Chou, Gabriela Contreras, Laurel Cooper, Hong-Jie Dai, Barbra Ferrell, Juliane Fluck, Socorro Gama-Castro, Nancy George, Georgios V. Gkoutos, Afroza Khanam Irin, Lars Juhl Jensen, Silvia Jimenez, Toni Rose Jue, Ingrid M. Keseler, Sumit Madan, Sérgio Matos, Peter McQuilton, Marija Milacic, Matthew E. Mort, Jeyakumar Natarajan, Evangelos Pafilis, Emiliano Pereira, Shruti Rao, Fabio Rinaldi, Karen Rothfels, David Salgado, Raquel M. Silva, Onkar Singh, Raymund Stefancsik, Chu-Hsien Su, Suresh Subramani, Hamsa D. Tadepally, Loukia Tsaprouni, Nicole A. Vasilevsky, Xiaodong Wang, Andrew Chatr-aryamontri, Stanley J. F. Laulederkind, Sherri Matis-Mitchell, Johanna R. McEntyre, Sandra E. Orchard, Sangya Pundir, Raul Rodriguez-Esteban, Kimberly Van Auken, Zhiyong Lu, Mary L. Schaeffer, Cathy H. Wu, Lynette Hirschman, Cecilia N. Arighi:
  Overview of the interactive task in BioCreative V. Database J. Biol. Databases Curation 2016 (2016)
• 
  Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Jacqueline Kirby, Bo Li, Yevgeniy Vorobeychik, Bradley A. Malin:
  Optimizing annotation resources for natural language de-identification via a game theoretic framework. J. Biomed. Informatics 61: 97-109 (2016)
• 2015
• 
  Ritu Khare, John D. Burger, John S. Aberdeen, David Tresner-Kirsch, Theodore J. Corrales, Lynette Hirschman, Zhiyong Lu:
  Scaling drug indication curation through crowdsourcing. Database J. Biol. Databases Curation 2015 (2015)
• 
  Karin Verspoor, Hagit Shatkay, Lynette Hirschman, Christian Blaschke, Alfonso Valencia:
  Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013. Bioinform. 31(2): 297-298 (2015)
• 2014
• 
  Cecilia N. Arighi, Cathy H. Wu, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Alfonso Valencia, Zhiyong Lu, W. John Wilbur, Thomas C. Wiegers:
  BioCreative-IV virtual issue. Database J. Biol. Databases Curation 2014 (2014)
• 
  John D. Burger, Emily Doughty, Ritu Khare, Chih-Hsuan Wei, Rajashree Mishra, John S. Aberdeen, David Tresner-Kirsch, Ben Wellner, Maricel G. Kann, Zhiyong Lu, Lynette Hirschman:
  Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing. Database J. Biol. Databases Curation 2014 (2014)
• 
  Muqun Li, David Carrell, John S. Aberdeen, Lynette Hirschman, Bradley A. Malin:
  De-identification of clinical narratives through writing complexity measures. Int. J. Medical Informatics 83(10): 750-767 (2014)
• 2013
• 
  David A. Hanauer, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Cheryl Clark, Kai Zheng, Lynette Hirschman:
  Bootstrapping a de-identification system for narrative patient records: Cost-performance tradeoffs. Int. J. Medical Informatics 82(9): 821-831 (2013)
• 
  David Carrell, Bradley A. Malin, John S. Aberdeen, Samuel Bayer, Cheryl Clark, Ben Wellner, Lynette Hirschman:
  Hiding in plain sight: use of realistic surrogates to reduce exposure of protected health information in clinical text. J. Am. Medical Informatics Assoc. 20(2): 342-348 (2013)
• 2012
• 
  Pascale Gaudet, Cecilia N. Arighi, Frederic B. Bastian, Alex Bateman, Judith A. Blake, J. Michael Cherry, Peter D'Eustachio, Robert D. Finn, Michelle G. Giglio, Lynette Hirschman, Renate Kania, William Klimke, Maria Jesus Martin, Ilene Karsch-Mizrachi, Monica C. Munoz-Torres, Darren A. Natale, Claire O'Donovan, B. F. Francis Ouellette, Kim D. Pruitt, Marc Robinson-Rechavi, Susanna-Assunta Sansone, Paul N. Schofield, Granger G. Sutton, Kimberly Van Auken, Sona Vasudevan, Cathy H. Wu, Jasmine Young, Raja Mazumder:
  Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference. Database J. Biol. Databases Curation 2012 (2012)
• 
  Lynette Hirschman, Gully A. P. C. Burns, Martin Krallinger, Cecilia N. Arighi, K. Bretonnel Cohen, Alfonso Valencia, Cathy H. Wu, Andrew Chatr-aryamontri, Karen G. Dowell, Eva Huala, Anália Lourenço, Robert S. Nash, Anne-Lise Veuthey, Thomas C. Wiegers, Andrew G. Winter:
  Text mining for the biocuration workflow. Database J. Biol. Databases Curation 2012 (2012)
• 
  Zhiyong Lu, Lynette Hirschman:
  Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II. Database J. Biol. Databases Curation 2012 (2012)
• 
  Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur:
  BioCreative-2012 Virtual Issue. Database J. Biol. Databases Curation 2012 (2012)
• 
  John D. Burger, Emily Doughty, Samuel Bayer, David Tresner-Kirsch, Ben Wellner, John S. Aberdeen, Kyungjoon Lee, Maricel G. Kann, Lynette Hirschman:
  Validating Candidate Gene-Mutation Relations in MEDLINE Abstracts via Crowdsourcing. DILS 2012: 83-91
• 2011
• 
  Cecilia N. Arighi, Zhiyong Lu, Martin Krallinger, Kevin Bretonnel Cohen, W. John Wilbur, Alfonso Valencia, Lynette Hirschman, Cathy H. Wu:
  Overview of the BioCreative III Workshop. BMC Bioinform. 12(S-8): S1 (2011)
• 
  Cecilia N. Arighi, Phoebe M. Roberts, Shashank Agarwal, Sanmitra Bhattacharya, Gianni Cesareni, Andrew Chatr-aryamontri, Simon Clematide, Pascale Gaudet, Michelle G. Giglio, Ian Harrow, Eva Huala, Martin Krallinger, Ulf Leser, Donghui Li, Feifan Liu, Zhiyong Lu, Lois J. Maltais, Naoaki Okazaki, Livia Perfetto, Fabio Rinaldi, Rune Sætre, David Salgado, Padmini Srinivasan, Philippe E. Thomas, Luca Toldo, Lynette Hirschman, Cathy H. Wu:
  BioCreative III interactive task: an overview. BMC Bioinform. 12(S-8): S4 (2011)
• 
  Wendy Webber Chapman, Prakash M. Nadkarni, Lynette Hirschman, Leonard W. D'Avolio, Guergana K. Savova, Özlem Uzuner:
  Overcoming barriers to NLP for clinical text: the role of shared tasks and the need for additional creative solutions. J. Am. Medical Informatics Assoc. 18(5): 540-543 (2011)
• 
  Cheryl Clark, John S. Aberdeen, Matthew Coarr, David Tresner-Kirsch, Ben Wellner, Alexander S. Yeh, Lynette Hirschman:
  MITRE system for clinical assertion status classification. J. Am. Medical Informatics Assoc. 18(5): 563-567 (2011)
• 
  Marc E. Colosimo, Matthew W. Peterson, Scott A. Mardis, Lynette Hirschman:
  Nephele: genotyping via complete composition vectors and MapReduce. Source Code Biol. Medicine 6: 13 (2011)
• 2010
• 
  John S. Aberdeen, Samuel Bayer, Reyyan Yeniterzi, Benjamin Wellner, Cheryl Clark, David A. Hanauer, Bradley A. Malin, Lynette Hirschman:
  The MITRE Identification Scrubber Toolkit: Design, training, and assessment. Int. J. Medical Informatics 79(12): 849-859 (2010)
• 
  Reyyan Yeniterzi, John S. Aberdeen, Samuel Bayer, Benjamin Wellner, Lynette Hirschman, Bradley A. Malin:
  Effects of personal identifier resynthesis on clinical text de-identification. J. Am. Medical Informatics Assoc. 17(2): 159-168 (2010)

skipping 120 more matches