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2. DILS 2005: San Diego, CA, USA
- Bertram Ludäscher, Louiqa Raschid:
Data Integration in the Life Sciences, Second InternationalWorkshop, DILS 2005, San Diego, CA, USA, July 20-22, 2005, Proceedings. Lecture Notes in Computer Science 3615, Springer 2005, ISBN 3-540-27967-9
Keynotes
- Shankar Subramaniam:
Challenges in Biological Data Integration in the Post-genome Sequence Era. 1 - Peter Buneman:
Curated Databases. 2
User Applications
- Sarah Cohen Boulakia
, Susan B. Davidson, Christine Froidevaux:
A User-Centric Framework for Accessing Biological Sources and Tools. 3-18 - Prabhdeep Singh, R. Bhimavarapu, Hasan Davulcu, Chitta Baral, Seungchan Kim
BioLog: A Browser Based Collaboration and Resource Navigation Assistant for BioMedical Researchers. 19-30 - Kaushik Sinha, Xuan Zhang, Ruoming Jin, Gagan Agrawal:
Learning Layouts of Biological Datasets Semi-automatically. 31-45
Ontologies
- C. Maria Keet:
Factors Affecting Ontology Development in Ecology. 46-62 - Silke Trißl, Ulf Leser:
Querying Ontologies in Relational Database Systems. 63-79 - Jessie B. Kennedy, Robert Kukla, Trevor Paterson:
Scientific Names Are Ambiguous as Identifiers for Biological Taxa: Their Context and Definition Are Required for Accurate Data Integration. 80-95 - Peter Mork, Ron Shaker, Peter Tarczy-Hornoch:
The Multiple Roles of Ontologies in the BioMediator Data Integration System. 96-104
Data Integration I-IV
- Jaewoo Kang, Jiong Yang, Wanhong Xu, Pankaj Chopra:
Integrating Heterogeneous Microarray Data Sources Using Correlation Signatures. 105-120 - Tran Hoai Nam, Chitta Baral, Vinay J. Nagaraj, Lokesh Joshi:
Knowledge-Based Integrative Framework for Hypothesis Formation in Biochemical Networks. 121-136 - Malika Mahoui, Harshad Kulkarni, Nianhua Li, Zina Ben-Miled, Katy Börner:
Semantic Correspondence in Federated Life Science Data Integration Systems. 137-144 - Greeshma Neglur, Robert L. Grossman, Bing Liu:
Assigning Unique Keys to Chemical Compounds for Data Integration: Some Interesting Counter Examples. 145-157 - Emilie Guérin, Gwenaëlle Marquet, Anita Burgun, Olivier Loréal
Integrating and Warehousing Liver Gene Expression Data and Related Biomedical Resources in GEDAW. 158-174 - Doina Caragea
Information Integration and Knowledge Acquisition from Semantically Heterogeneous Biological Data Sources. 175-190 - Michael Maibaum, Lucas Zamboulis, Galia Rimon, Christine A. Orengo, Nigel J. Martin, Alexandra Poulovassilis:
Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit. 191-207 - Toralf Kirsten
Hybrid Integration of Molecular-Biological Annotation Data. 208-223 - Oliver Fiehn, Gert Wohlgemuth, Martin Scholz:
Setup and Annotation of Metabolomic Experiments by Integrating Biological and Mass Spectrometric Metadata. 224-239 - Raymond K. Pon, Terence Critchlow:
Performance-Oriented Privacy-Preserving Data Integration. 240-256
Potpourri
- Stefan Jablonski, Rainer Lay, Sascha Müller, Christian Meiler, Matthias Faerber, Victor Derhartunian, Georg Michelson:
Building a Generic Platform for Medical Screening Applications Based on Domain Specific Modeling and Process Orientation. 257-265 - Anne H. H. Ngu, David Buttler
Automatic Generation of Data Types for Classification of Deep Web Sources. 266-274 - Zoé Lacroix, Kaushal Parekh, Maria-Esther Vidal, Marelis Cardenas, Natalia Marquez:
BioNavigation: Selecting Optimum Paths Through Biological Resources to Evaluate Ontological Navigational Queries. 275-283
Posters and Demonstrations
- Ruey-Lung Hsiao, Douglas Stott Parker Jr., Hung-chih Yang
Support for BioIndexing in BLASTgres. 284-287 - Rafael Targino, Maria Cláudia Cavalcanti
An Environment to Define and Execute In-Silico Workflows Using Web Services. 288-291 - George Zheng, Athman Bouguettaya:
Web Service Mining for Biological Pathway Discovery. 292-295 - Zoé Lacroix, Hervé Ménager
SemanticBio: Building Conceptual Scientific Workflows over Web Services. 296-299 - Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhiping Wang, Jason Lee, Sun Kim:
PLATCOM: Current Status and Plan for the Next Stages. 300-304 - Seong Joon Yoo, Min Kyung Kim, Ho Il Lee, Hyun Seok Park:
SOAP API for Integrating Biological Interaction Databases. 305-308 - Chitta Baral, Hasan Davulcu, Mutsumi Nakamura, Prabhdeep Singh, Luis Tari, Lian Yu:
Collaborative Curation of Data from Bio-medical Texts and Abstracts and Its integration. 309-312 - Sergey Krivov, Ferdinando Villa:
Towards an Ontology Based Visual Query System. 313-316
Invited Briefings
- Vadim Astakhov, Amarnath Gupta, Simone Santini, Jeffrey S. Grethe
Data Integration in the Biomedical Informatics Research Network (BIRN). 317-320 - William Michener, James Beach, Shawn Bowers, Laura L. Downey, Matthew B. Jones
Data Integration and Workflow Solutions for Ecology. 321-324 - Judith Bayard Cushing, Tyrone Wilson:
Eco-Informatics for Decision Makers Advancing a Research Agenda. 325-334 - Mehmet M. Dalkilic:
An Architecture and Application for Integrating Curation Data at the Residue Level for Proteins. 335-338 - Aaron Birkland, Golan Yona:
The Biozon System for Complex Analysis of Heterogeneous Interrelated Biological Data and Discovery of Emergent Structures. 339-342
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