Computer Physics Communications, Volume 185

Volume 185, Number 1, January 2014

Computational physics

• 
  Venera Khoromskaia, Boris N. Khoromskij:
  Møller-Plesset (MP2) energy correction using tensor factorization of the grid-based two-electron integrals. 2-10
• 
  Miguel Cárdenas-Montes, Miguel A. Vega-Rodríguez, Christopher Bonnett, Ignacio Sevilla-Noarbe, Rafael Ponce, Eusebio Sánchez Álvaro, Juan José Rodríguez-Vázquez:
  GPU-based shear-shear correlation calculation. 11-18
• 
  Xiaopeng Luo, Zhenzhou Lu, Xin Xu:
  A fast computational method for moment-independent uncertainty importance measure. 19-27
• 
  Zheyong Fan, Andreas Uppstu, Topi Siro, Ari Harju:
  Efficient linear-scaling quantum transport calculations on graphics processing units and applications on electron transport in graphene. 28-39
• 
  René Hammer, Walter Pötz:
  Staggered grid leap-frog scheme for the (2+1) D Dirac equation. 40-52
• 
  Xin Bian, Marco Ellero:
  A splitting integration scheme for the SPH simulation of concentrated particle suspensions. 53-62
• 
  Zhenlin Guo, Ping Lin, Yangfan Wang:
  Continuous finite element schemes for a phase field model in two-layer fluid Bénard-Marangoni convection computations. 63-78
• 
  Akira Kageyama, Tomoki Yamada:
  An approach to exascale visualization: Interactive viewing of in-situ visualization. 79-85
• 
  A. Perona, D. Borgogno, Lars-Goran Eriksson:
  A test electron model for the study of three dimensional magnetic reconnection effects. 86-95
• 
  Wenjun Deng, Guo-Yong Fu:
  Optimization by marker removal for δf particle simulations. 96-105
• 
  Rooholah Abedian, Hojatollah Adibi, Mehdi Dehghan:
  A high-order symmetrical weighted hybrid ENO-flux limiter scheme for hyperbolic conservation laws. 106-127
• 
  Jonathan Squire, Joshua W. Burby, Hong Qin:
  VEST: Abstract vector calculus simplification in Mathematica. 128-135
• 
  Edgar A. Gómez, Saravana Prakash Thirumuruganandham, Alejandro Santana:
  Split-operator technique for propagating phase space functions: Exploring chaotic, dissipative and relativistic dynamics. 136-143
• 
  Un-Hong Wong, Hon-Cheng Wong, Yonghui Ma:
  Global magnetohydrodynamic simulations on multiple GPUs. 144-152
• 
  Truong Vinh Truong Duy, Taisuke Ozaki:
  A decomposition method with minimum communication amount for parallelization of multi-dimensional FFTs. 153-164
• 
  Nikolai B. Marushchenko, Y. Turkin, H. Maassberg:
  Ray-tracing code TRAVIS for ECR heating, EC current drive and ECE diagnostic. 165-176
• 
  M. Dima:
  Flash vertexing algorithms for trigger applications. 177-180
• 
  Steven F. Henke, Sachin Shanbhag:
  Mesh sensitivity in peridynamic simulations. 181-193
• 
  Ulrich Hohenester:
  OCTBEC - A Matlab toolbox for optimal quantum control of Bose-Einstein condensates. 194-216
• 
  Stefan J. Eder, András Vernes, Gerhard Betz:
  Methods and numerical aspects of nanoscopic contact area estimation in atomistic tribological simulations. 217-228
• 
  Nhan Phan-Thien, Nam Mai-Duy, Dingyi Pan, B. C. Khoo:
  Exponential-time differencing schemes for low-mass DPD systems. 229-235

Computer programs in physics

• 
  V. P. Druzhinin, L. V. Kardapoltsev, V. A. Tayursky:
  GGRESRC: A Monte Carlo generator for the two-photon process e⁺e^-→e⁺e^-R(J^PC=0^-+) in the single-tag mode. 236-243
• 
  Daniel X. Ogburn, Colin L. Waters, Murray D. Sciffer, Jeffrey A. Hogan, Paul C. Abbott:
  A finite difference construction of the spheroidal wave functions. 244-253
• 
  Kristina D. Launey, S. Sarbadhicary, Tomás Dytrych, Jerry P. Draayer:
  Program in C for studying characteristic properties of two-body interactions in the framework of spectral distribution theory. 254-267
• 
  Richard W. Bowman, Graham M. Gibson, Anna Linnenberger, David B. Phillips, James A. Grieve, David M. Carberry, Steven Serati, Mervyn J. Miles, Miles J. Padgett:
  "Red Tweezers": Fast, customisable hologram generation for optical tweezers. 268-273
• 
  Eduardo X. Miqueles, Tiago A. Coimbra, Bruno D. Amaro, J. J. S. de Figueiredo:
  Analytical ray tracing system: Introducing art, a C-library designed for seismic applications. 274-293
• 
  Aaron M. Tagliaboschi, Jeremy B. Maddox:
  POTLIB2Math: A Mathematica interface to the potential energy surface library for chemical systems. 294-301
• 
  Soubhadra Sen, N. Mohankumar:
  Migpore, a code package for the estimation of migration of radioactive species in a porous medium. 302-306
• 
  J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota:
  A Maple package to find first order differential invariants of 2ODEs via a Darboux approach. 307-316
• 
  Toni Giorgino:
  Computing 1-D atomic densities in macromolecular simulations: The density profile tool for VMD. 317-322
• 
  Karol Kolodziej:
  carlomat, version 2 of the program for automatic computation of lowest order cross sections. 323-329
• 
  John Buckeridge, David O. Scanlon, Aron Walsh, C. Richard A. Catlow:
  Automated procedure to determine the thermodynamic stability of a material and the range of chemical potentials necessary for its formation relative to competing phases and compounds. 330-338
• 
  Yuan-Pin Chang, Frank Filsinger, Boris G. Sartakov, Jochen Küpper:
  CMIstark: Python package for the Stark-effect calculation and symmetry classification of linear, symmetric and asymmetric top wavefunctions in dc electric fields. 339-349
• 
  Aassim A. Azooz, Y. A. Al-Jawaady, Z. T. Ali:
  Langmuir probe RF plasma compensation using a simulation method. 350-356
• 
  Qian Miao, Yun-Hu Wang, Yong Chen, Yunqing Yang:
  PDEBellII: A Maple package for finding bilinear forms, bilinear Bäcklund transformations, Lax pairs and conservation laws of the KdV-type equations. 357-367
• 
  A. A. Babaev:
  Parallel code NSBC: Simulations of relativistic nuclei scattering by a bent crystal. 368-379
• 
  E. V. Correa Silva, G. A. Monerat, G. de Oliveira Neto, L. G. Ferreira Filho:
  Spectral: Solving Schroedinger and Wheeler-DeWitt equations in the positive semi-axis by the spectral method. 380-391
• 
  Claudio A. Gelmi, Héctor Jorquera:
  IDSOLVER: A general purpose solver for nth-order integro-differential equations. 392-397
• 
  M. F. Ciappina, José Antonio Pérez-Hernández, Maciej Lewenstein:
  ClassSTRONG: Classical simulations of strong field processes. 398-406
• 
  Claude M. Dion, A. Hashemloo, G. Rahali:
  Program for quantum wave-packet dynamics with time-dependent potentials. 407-414
• 
  Petros Souvatzis:
  Uquantchem: A versatile and easy to use quantum chemistry computational software. 415-421
• 
  Giovanni Pizzi, Dmitri Volja, Boris Kozinsky, Marco Fornari, Nicola Marzari:
  BoltzWann: A code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis. 422-429
• 
  G. F. Jefferson, J. Carminati:
  FracSym: Automated symbolic computation of Lie symmetries of fractional differential equations. 430-441

New version announcement

• 
  Erhan Okuyan, Ugur Güdükbay:
  BilKristal 2.0: A tool for pattern information extraction from crystal structures. 442-443

Volume 185, Number 2, February 2014

Computational physics

• 
  Uday K. Khankhoje, Thomas A. Cwik:
  A mesh reconfiguration scheme for speeding up Monte Carlo simulations of electromagnetic scattering by random rough surfaces. 445-447
• 
  Nicolas Crouseilles, Giovanni Manfredi:
  Asymptotic preserving schemes for the Wigner-Poisson-BGK equations in the diffusion limit. 448-458
• 
  Yunbao Huang, Shaoen Jiang, Haiyan Li, Qifu Wang, Liping Chen:
  Compressive analysis applied to radiation symmetry evaluation and optimization for laser-driven inertial confinement fusion. 459-471
• 
  David Greynat, Javier Sesma:
  A new approach to the epsilon expansion of generalized hypergeometric functions. 472-478
• 
  Ghislain Tchuen, Ferdinand Fogang, Yves Burtschell, Paul Woafo:
  A hybrid numerical method and its application to inviscid compressible flow problems. 479-488
• 
  Tian Qiu, Teng-Yue Han, Li-Xin Zhong, Zi-Ke Zhang, Guang Chen:
  Redundant correlation effect on personalized recommendation. 489-494
• 
  Elmar Westphal, S. P. Singh, C.-C. Huang, Gerhard Gompper, Roland G. Winkler:
  Multiparticle collision dynamics: GPU accelerated particle-based mesoscale hydrodynamic simulations. 495-503
• 
  Andrzej Ziólkowski:
  A numerical approach to nonlinear propagation of light in photorefractive media. 504-511
• 
  Georgios Panopoulos, T. E. Simos:
  A new phase-fitted eight-step symmetric embedded predictor-corrector method (EPCM) for orbital problems and related IVPs with oscillating solutions. 512-523
• 
  Niels Grønbech-Jensen, Natha Robert Hayre, Oded Farago:
  Application of the G-JF discrete-time thermostat for fast and accurate molecular simulations. 524-527
• 
  Maik Höschele, Jens Hoff, Alexey Pak, Matthias Steinhauser, Takahiro Ueda:
  MT: A Mathematica package to compute convolutions. 528-539
• 
  Michele Tuttafesta, A. D'Angola, Annarita Laricchiuta, P. Minelli, Mario Capitelli, Gianpiero Colonna:
  GPU and Multi-core based Reaction Ensemble Monte Carlo method for non-ideal thermodynamic systems. 540-549
• 
  Marco Baity-Jesi, Rachel A. Baños, Andrés Cruz Flor, Luis Antonio Fernández, José Miguel Gil-Narvión, Antonio Gordillo-Guerrero, David Iñiguez, Andrea Maiorano, Filippo Mantovani, Enzo Marinari, Victor Martin-Mayor, Jorge Monforte-Garcia, Antonio Munoz Sudupe, Denis Navarro, Giorgio Parisi, Sergio Perez Gaviro, Marcello Pivanti, Federico Ricci-Tersenghi, Juan Jesus Ruiz-Lorenzo, Sebastiano Fabio Schifano, Beatriz Seoane, Alfonso Tarancón, Raffaele Tripiccione, David Yllanes:
  Janus II: A new generation application-driven computer for spin-system simulations. 550-559
• 
  Simone Alioli, Simon Badger, J. Bellm, Benedikt Biedermann, Fawzi Boudjema, Gavin Cullen, Ansgar Denner, H. van Deurzen, Stefan Dittmaier, R. Frederix, S. Frixione, M. V. Garzelli, S. Gieseke, E. W. N. Glover, Nicolas Greiner, Gudrun Heinrich, Valentin Hirschi, S. Höche, J. Huston, H. Ita, Nikolas Kauer, Frank Krauss, G. Luisoni, D. Maître, Fabio Maltoni, Paolo Nason, Carlo Oleari, R. Pittau, S. Plätzer, Stefano Pozzorini, Laura Reina, Christian Reuschle, Tania Robens, Johannes Schlenk, M. Schönherr, F. Siegert, J. F. von Soden-Fraunhofen, F. Tackmann, Francesco Tramontano, Peter Uwer, Gavin Salam, Peter Skands, Stefan Weinzierl, J. Winter, Valery Yundin, Giulia Zanderighi, Marco Zaro:
  Update of the Binoth Les Houches Accord for a standard interface between Monte Carlo tools and one-loop programs. 560-571
• 
  Yueh-Cheng Kuo, Tsung-Lin Lee:
  Tracking local optimality for cost parameterized optimization problems. 572-577
• 
  J. M. TenBarge, Gregory G. Howes, William Dorland, Gregory W. Hammett:
  An oscillating Langevin antenna for driving plasma turbulence simulations. 578-589
• 
  Lars Josef Höök, T. Johnson:
  Composition schemes for the stochastic differential equation describing collisional pitch-angle diffusion. 590-594
• 
  Antonio Souto-Iglesias, Fabricio Macià, Leo M. González, Jose L. Cercos-Pita:
  Addendum to "On the consistency of MPS" [Comput. Phys. Comm. 184 (3) (2013) 732-745]. 595-598

Computer programs in physics

• 
  Igor M. Sitnik:
  Development of the FUMILI minimization package. 599-603
• 
  Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni, Giovanni Bussi:
  PLUMED 2: New feathers for an old bird. 604-613
• 
  Christoph Schimeczek, Günter Wunner:
  Accurate 2d finite element calculations for hydrogen in magnetic fields of arbitrary strength. 614-621
• 
  Brandon Murakami:
  SuperLFV: An SLHA tool for lepton flavor violating observables in supersymmetric models. 622-637
• 
  Antonio Bueno, A. Gascón:
  CORSIKA implementation of heavy quark production and propagation in extensive air showers. 638-650
• 
  Daniel Schick, A. Bojahr, M. Herzog, R. Shayduk, C. von Korff Schmising, M. Bargheer:
  udkm1Dsim - A simulation toolkit for 1D ultrafast dynamics in condensed matter. 651-660
• 
  S. Rama, C. Surendra Dilip, Rajesh Narayana Perumal:
  A software program to investigate the nucleation kinetics of solution grown crystals using MATLAB platform. 661-669
• 
  Hua-sheng Xie:
  PDRF: A general dispersion relation solver for magnetized multi-fluid plasma. 670-675
• 
  Sandro Giuseppe Chiodo, Monica Leopoldini:
  MolSOC: A spin-orbit coupling code. 676-683
• 
  David A. Bonhommeau, Marie-Pierre Gaigeot:
  MDMC²: A molecular dynamics code for investigating the fragmentation dynamics of multiply charged clusters. 684-694

New version announcement

• 
  M. D. J. Hollis, M. Tessenyi, Giovanna Tinetti:
  tau: A 1D radiative transfer code for transmission spectroscopy of extrasolar planet atmospheres. 695

Volume 185, Number 3, March 2014

Computational physics

• 
  Ianik Plante, Luc Devroye, Francis A. Cucinotta:
  Calculations of distance distributions and probabilities of binding by ligands between parallel plane membranes comprising receptors. 697-707
• 
  Viktor K. Decyk, Tajendra V. Singh:
  Particle-in-Cell algorithms for emerging computer architectures. 708-719
• 
  Christopher D. Cooper, Jaydeep P. Bardhan, Lorena A. Barba:
  A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers. 720-729
• 
  Daniele Barettin, Paolo Sibani:
  Optimization by record dynamics. 730-735
• 
  David L. Green, Lee A. Berry:
  Iterative addition of parallel temperature effects to finite-difference simulation of radio-frequency wave propagation in plasmas. 736-743
• 
  Xiaoying Pang, Larry Rybarcyk:
  GPU accelerated online multi-particle beam dynamics simulator for ion linear particle accelerators. 744-753
• 
  Bo Li, Keisuke Fujii, Yuanning Gao:
  Kalman-filter-based track fitting in non-uniform magnetic field with segment-wise helical track model. 754-761
• 
  David W. Schwenke:
  On the computation of high order Rys quadrature weights and nodes. 762-763
• 
  Hannes Grimm-Strele, Friedrich Kupka, Herbert J. Muthsam:
  Curvilinear grids for WENO methods in astrophysical simulations. 764-776
• 
  Truong Vinh Truong Duy, Taisuke Ozaki:
  A three-dimensional domain decomposition method for large-scale DFT electronic structure calculations. 777-789
• 
  Hai-Wei Sun, Leonard Z. Li:
  A CCD-ADI method for unsteady convection-diffusion equations. 790-797
• 
  Yufeng Nie, Weiwei Zhang, Nan Qi, Yiqiang Li:
  Parallel node placement method by bubble simulation. 798-808
• 
  Manoj Kumar, Sapna Pandit:
  A composite numerical scheme for the numerical simulation of coupled Burgers' equation. 809-817
• 
  Ravishankar Sundararaman, Tomás A. Arias:
  Efficient classical density-functional theories of rigid-molecular fluids and a simplified free energy functional for liquid water. 818-825
• 
  Sabrina Stella, Roberto Chignola, Edoardo Milotti:
  Efficient and extendible class scheme for the combined reaction-diffusion of multiple molecular species. 826-835
• 
  Hailing Xiong, Hang Li, Weiping Chen, Laosheng Wu:
  Data structure for on-lattice cluster-cluster aggregation model performance optimization. 836-840
• 
  Kasper R. Kuijpers, Lilian de Martín, J. Ruud van Ommen:
  Optimizing off-lattice Diffusion-Limited Aggregation. 841-846
• 
  Matt Landreman, Adam Stahl, Tünde Fülöp:
  Numerical calculation of the runaway electron distribution function and associated synchrotron emission. 847-855
• 
  Miao Gao, Gui-Ping Zhang, Zhong-Yi Lu:
  Electronic transport of a large scale system studied by renormalized transfer matrix method: Application to armchair graphene nanoribbons between quantum wires. 856-861
• 
  Hui Wang, Bo Wu, Zhixiang Huang, Xianliang Wu:
  A symplectic FDTD algorithm for the simulations of lossy dispersive materials. 862-872
• 
  Fabiano Corsetti:
  The orbital minimization method for electronic structure calculations with finite-range atomic basis sets. 873-883
• 
  Lukasz Walewski, Harald Forbert, Dominik Marx:
  Reactive path integral quantum simulations of molecules solvated in superfluid helium. 884-899
• 
  Ivan Cimrák, Markus Gusenbauer, Iveta Jancigová:
  An ESPResSo implementation of elastic objects immersed in a fluid. 900-907
• 
  Wei Jiang, James C. Phillips, Lei Huang, Mikolai Fajer, Yilin Meng, James C. Gumbart, Yun Luo, Klaus Schulten, Benoît Roux:
  Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD. 908-916
• 
  Reza Mohammadi:
  An exponential spline solution of nonlinear Schrödinger equations with constant and variable coefficients. 917-932
• 
  V. B. Zlokazov:
  Confidence interval optimization for testing hypotheses under data with low statistics. 933-938

Computer programs in physics

• 
  Bohumir Jelinek, Mohsen Eshraghi, Sergio Felicelli, John F. Peters:
  Large-scale parallel lattice Boltzmann-cellular automaton model of two-dimensional dendritic growth. 939-947
• 
  Karl Jansen, Hernan Leovey, Andreas Ammon, Andreas Griewank, M. Müller-Preussker:
  Quasi-Monte Carlo methods for lattice systems: A first look. 948-959
• 
  Geneviève Bélanger, Fawzi Boudjema, Alexander Pukhov, A. Semenov:
  micrOMEGAs_3: A program for calculating dark matter observables. 960-985
• 
  Nabil L. Youssef, Salah Gomaa Elgendi:
  New Finsler package. 986-997
• 
  Jelena Smiljanic, M. Zezelj, V. Milanovic, Jelena Radovanovic, Igor Stankovic:
  MATLAB-based program for optimization of quantum cascade laser active region parameters and calculation of output characteristics in magnetic field. 998-1006
• 
  Alberto Otero-de-la-Roza, Erin R. Johnson, Víctor Luaña:
  Critic2: A program for real-space analysis of quantum chemical interactions in solids. 1007-1018
• 
  Michele Ceriotti, Joshua More, David E. Manolopoulos:
  i-PI: A Python interface for ab initio path integral molecular dynamics simulations. 1019-1026
• 
  Stephen Oxburgh, Tomás Tyc, Johannes Courtial:
  Dr TIM: Ray-tracer TIM, with additional specialist scientific capabilities. 1027-1037
• 
  Yukihiro Komura, Yutaka Okabe:
  CUDA programs for the GPU computing of the Swendsen-Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models. 1038-1043
• 
  Bruno Golosio, Tom Schoonjans, Antonio Brunetti, Piernicola Oliva, Giovanni Luca Masala:
  Monte Carlo simulation of X-ray imaging and spectroscopy experiments using quadric geometry and variance reduction techniques. 1044-1052
• 
  Siegfried Vanaverbeke, Rony Keppens, Stefaan Poedts:
  GRADSPMHD: A parallel MHD code based on the SPH formalism. 1053-1073
• 
  Upakarasamy Lourderaj, Rui Sun, Swapnil C. Kohale, George L. Barnes, Wibe A. de Jong, Theresa L. Windus, William L. Hase:
  The VENUS/NWChem software package. Tight coupling between chemical dynamics simulations and electronic structure theory. 1074-1080
• 
  Jan Kaspar:
  Elegent - An elastic event generator. 1081-1084
• 
  David Kauzlaric, Marek Dynowski, Lars Pastewka, Andreas Greiner, Jan G. Korvink:
  SYMPLER: SYMbolic ParticLE simulatoR with grid-computing interface. 1085-1099
• 
  Thomas Müller:
  MPPhys - A many-particle simulation package for computational physics education. 1100-1108
• 
  Toni Giorgino:
  PLUMED-GUI: An environment for the interactive development of molecular dynamics analysis and biasing scripts. 1109-1114
• 
  H. Carli, L. G. S. Duarte, L. A. C. P. da Mota:
  A Maple package for improved global mapping forecast. 1115-1129
• 
  Florian Lyonnet, I. Schienbein, Florian Staub, A. Wingerter:
  PyR@TE: Renormalization group equations for general gauge theories. 1130-1152
• 
  Peter Marquard, Nikolai Zerf:
  SLAM, a Mathematica interface for SUSY spectrum generators. 1153-1171
• 
  Nicholas V. Sarlis, Stavros-Richard G. Christopoulos:
  Visualization of the significance of Receiver Operating Characteristics based on confidence ellipses. 1172-1176
• 
  Ulrich Hohenester:
  Simulating electron energy loss spectroscopy with the MNPBEM toolbox. 1177-1187

New version announcement

• 
  David A. Bonhommeau, Marius Lewerenz, Marie-Pierre Gaigeot:
  MCMC² (version 1.1): A Monte Carlo code for multiply-charged clusters. 1188-1191

Corrigenda

• 
  Santos B. Yuste, Joaquín Quintana-Murillo:
  Corrigendum to "A finite difference method with non-uniform timesteps for fractional diffusion equations" [Computer Physics Communications 183 (12) (2012) 2594-2600]. 1192
• 
  Zhaopeng Zhong, Alberto Talamo, Yousry Gohar:
  Corrigendum to "Monte Carlo and deterministic computational methods for the calculation of the effective delayed neutron fraction" [Computer Physics Communications 184 (2013) 1660-1665]. 1193

Volume 185, Number 4, April 2014

Computational physics

• 
  Andrew R. Siegel, Kord Smith, Kyle Gerard Felker, Paul K. Romano, Benoit Forget, Peter H. Beckman:
  Improved cache performance in Monte Carlo transport calculations using energy banding. 1195-1199
• 
  Pierluigi Amodio, Tatiana V. Levitina, Giuseppina Settanni, Ewa B. Weinmüller:
  Numerical simulation of the whispering gallery modes in prolate spheroids. 1200-1206
• 
  Sergey V. Dolgov, Boris N. Khoromskij, Ivan V. Oseledets, Dmitry V. Savostyanov:
  Computation of extreme eigenvalues in higher dimensions using block tensor train format. 1207-1216
• 
  Guo-Kang Er:
  Probabilistic solutions of some multi-degree-of-freedom nonlinear stochastic dynamical systems excited by filtered Gaussian white noise. 1217-1222
• 
  C. Batistakis, A. V. Lyulin:
  Simulated glass transition in thin polymer films: Influence of truncating the non-bonded interaction potentials. 1223-1229
• 
  Higinio Ramos, Jesús Vigo-Aguiar:
  A trigonometrically-fitted method with two frequencies, one for the solution and another one for the derivative. 1230-1236
• 
  Andrew J. Wickersham, Xuesong Li, Lin Ma:
  Comparison of Fourier, principal component and wavelet analyses for high speed flame measurements. 1237-1245
• 
  François Jollet, Marc Torrent, Natalie Holzwarth:
  Generation of Projector Augmented-Wave atomic data: A 71 element validated table in the XML format. 1246-1254
• 
  Xu Qian, Songhe Song, Yaming Chen:
  A semi-explicit multi-symplectic splitting scheme for a 3-coupled nonlinear Schrödinger equation. 1255-1264
• 
  Pedro Valero-Lara, Alfredo Pinelli, Manuel Prieto-Matías:
  Fast finite difference Poisson solvers on heterogeneous architectures. 1265-1272
• 
  Ilya Valuev, Alexei Deinega, Sergey Belousov:
  Implementation of the iterative finite-difference time-domain technique for simulation of periodic structures at oblique incidence. 1273-1281
• 
  Randhir Singh, Jitendra Kumar:
  An efficient numerical technique for the solution of nonlinear singular boundary value problems. 1282-1289
• 
  Adel Bouazra, S. Mnasri, Sami Abdi-Ben Nasrallah, Moncef Said:
  Numerical modeling of the InAs quantum dot with application of coordinate transformation and the finite difference method. 1290-1298
• 
  José Wilson M. Pinto, Luiz N. Oliveira:
  Recursive computation of matrix elements in the numerical renormalization group. 1299-1309
• 
  Eero Hirvijoki, Otto Asunta, Tuomas Koskela, T. Kurki-Suonio, J. Miettunen, Seppo Sipilä, A. Snicker, Simppa Äkäslompolo:
  ASCOT: Solving the kinetic equation of minority particle species in tokamak plasmas. 1310-1321

Computer programs in physics

• 
  Mihailo Backovic, José Juknevich:
  TemplateTagger v1.0.0: A template matching tool for jet substructure. 1322-1338
• 
  Ioan Valeriu Grossu, Calin Besliu, D. Felea, Alexandru Jipa:
  High precision framework for chaos many-body engine. 1339-1342
• 
  Lev Yu. Barash, Lev N. Shchur:
  PRAND: GPU accelerated parallel random number generation library: Using most reliable algorithms and applying parallelism of modern GPUs and CPUs. 1343-1353

Volume 185, Number 5, May 2014

Computational physics

• 
  Americo Cunha Jr., Rafael Nasser, Rubens Sampaio, Hélio Lopes, Karin K. Breitman:
  Uncertainty quantification through the Monte Carlo method in a cloud computing setting. 1355-1363
• 
  Tarcísio Marciano da Rocha Filho:
  Molecular dynamics for long-range interacting systems on graphic processing units. 1364-1369
• 
  Constantia Alexandrou, M. Constantinou, Vincent Drach, K. Hadjiyiannakou, Karl Jansen, G. Koutsou, Alexei Strelchenko, A. Vaquero:
  Evaluation of disconnected quark loops for hadron structure using GPUs. 1370-1382
• 
  I-Lin Ho, Chung-Hsien Chou, Yia-Chung Chang:
  Theoretical study of electronic transport through quasicrystalline nanotubes using mesh inflation approach. 1383-1388
• 
  Kyle Jay Michel, Chris Wolverton:
  Symmetry building Monte Carlo-based crystal structure prediction. 1389-1393
• 
  M. Bilal, Banaras Khan, H. A. Rahnamaye Aliabad, Muhammad Maqbool, S. Jalai Asadabadi, Iftikhar Ahmad:
  Thermoelectric properties of SbNCa₃ and BiNCa₃ for thermoelectric devices and alternative energy applications. 1394-1398
• 
  Wenting Shao, Xionghua Wu:
  The numerical solution of the nonlinear Klein-Gordon and Sine-Gordon equations using the Chebyshev tau meshless method. 1399-1409
• 
  David A. Pigg, A. Sait Umar, Volker E. Oberacker:
  Eulerian rotations of deformed nuclei for TDDFT calculations. 1410-1414
• 
  E. C. Howell, Carl R. Sovinec:
  Solving the Grad-Shafranov equation with spectral elements. 1415-1421
• 
  Ken-Ming Lin, Yu-Hui Huang, Wan-Sheng Su, T. C. Leung:
  Strain effects on the band gap and work function of zigzag single-walled carbon nanotubes and graphene: A comparative study. 1422-1428
• 
  Daniel Tapiador, William O'Mullane, A. G. A. Brown, Xavier Luri, Eduardo Huedo, P. Osuna:
  A framework for building hypercubes using MapReduce. 1429-1438
• 
  Rui Jiang, Mao-Bin Hu, Bin Jia, Ziyou Gao:
  A new mechanism for metastability of under-saturated traffic responsible for time-delayed traffic breakdown at the signal. 1439-1442

Computer programs in physics

• 
  Z. Bern, L. J. Dixon, Fernando Febres Cordero, S. Höche, H. Ita, D. A. Kosower, D. Maître:
  Ntuples for NLO events at hadron colliders. 1443-1460
• 
  Asif Mushtaq, Kåre Olaussen:
  Automatic code generator for higher order integrators. 1461-1472
• 
  Philipp Kant:
  Finding linear dependencies in integration-by-parts equations: A Monte Carlo approach. 1473-1476
• 
  Andrew J. Morris, Rebecca J. Nicholls, Chris J. Pickard, Jonathan R. Yates:
  OptaDOS: A tool for obtaining density of states, core-level and optical spectra from electronic structure codes. 1477-1485
• 
  Daisuke Nishiura, Miki Y. Matsuo, Hide Sakaguchi:
  ppohDEM: Computational performance for open source code of the discrete element method. 1486-1495

New version announcements

• 
  J. Avellar, M. S. Cardoso, L. G. S. Duarte, L. A. C. P. da Mota:
  Determining Liouvillian first integrals for dynamical systems in the plane and an integrability analysis. 1496-1497
• 
  Christoph Schimeczek, Dirk Engel, Günter Wunner:
  A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree-Fock-Roothaan method. 1498-1499

Volume 185, Number 6, June 2014

Feature Article

• 
  Sebastian Wouters, Ward Poelmans, Paul W. Ayers, Dimitri Van Neck:
  CheMPS2: A free open-source spin-adapted implementation of the density matrix renormalization group for ab initio quantum chemistry. 1501-1514

Computational physics

• 
  Ameneh Taleei, Mehdi Dehghan:
  Time-splitting pseudo-spectral domain decomposition method for the soliton solutions of the one- and multi-dimensional nonlinear Schrödinger equations. 1515-1528
• 
  T. Fritzsche, Thomas Hahn, Sven Heinemeyer, F. von der Pahlen, Heidi Rzehak, C. Schappacher:
  The implementation of the renormalized complex MSSM in FeynArts and FormCalc. 1529-1545
• 
  Pierre de Buyl, Peter H. Colberg, Felix Höfling:
  H5MD: A structured, efficient, and portable file format for molecular data. 1546-1553
• 
  Nathan J. Quinlan, Libor Lobovský, Ruairi M. Nestor:
  Development of the meshless finite volume particle method with exact and efficient calculation of interparticle area. 1554-1563
• 
  Tzu-Liang Chan, Alex J. Lee, James R. Chelikowsky:
  An effective capacitance model for computing the electronic properties of charged defects in crystals. 1564-1569
• 
  Csaba Nemes, Gergely Barcza, Zoltán Nagy, Örs Legeza, Péter Szolgay:
  The density matrix renormalization group algorithm on kilo-processor architectures: Implementation and trade-offs. 1570-1581
• 
  Naofumi Kitsunezaki, Atsushi Okabe:
  Higher-order correction to the FDTD method based on the integral form of Maxwell's equations. 1582-1588
• 
  Veerle Ledoux, Marnix Van Daele:
  The accurate numerical solution of the Schrödinger equation with an explicitly time-dependent Hamiltonian. 1589-1594
• 
  Ales Vítek, René Kalus:
  Two-dimensional multiple-histogram method applied to isothermal-isobaric Monte Carlo simulations of molecular clusters. 1595-1605
• 
  Hongwei Li, Xiaonan Wu, Jiwei Zhang:
  Local artificial boundary conditions for Schrödinger and heat equations by using high-order azimuth derivatives on circular artificial boundary. 1606-1615
• 
  Ozlem Ozgun, Mustafa Kuzuoglu:
  A coordinate transformation approach for efficient repeated solution of Helmholtz equation pertaining to obstacle scattering by shape deformations. 1616-1627
• 
  James Tickner:
  Arbitrary perturbations in Monte Carlo neutral-particle transport. 1628-1638
• 
  Guido Falk von Rudorff, Christoph Wehmeyer, Daniel Sebastiani:
  Efficient implementation and application of the artificial bee colony algorithm to low-dimensional optimization problems. 1639-1646
• 
  Valerio Bertone, Stefano Carrazza, Juan Rojo:
  APFEL: A PDF evolution library with QED corrections. 1647-1668
• 
  S. R. Haskey, B. D. Blackwell, D. G. Pretty:
  Clustering of periodic multichannel timeseries data with application to plasma fluctuations. 1669-1680

Computer programs in physics

• 
  Alejandro M. Aragón:
  A C++11 implementation of arbitrary-rank tensors for high-performance computing. 1681-1696
• 
  Stephan Fritzsche:
  The Feynman tools for quantum information processing: Design and implementation. 1697-1718
• 
  Teake Nutma:
  xTras: A field-theory inspired xAct package for mathematica. 1719-1738
• 
  Qingang Xiong, Soroush Aramideh, Alberto Passalacqua, Song-Charng Kong:
  BIOTC: An open-source CFD code for simulating biomass fast pyrolysis. 1739-1746
• 
  Wu Li, Jesús Carrete, Nebil A. Katcho, Natalio Mingo:
  ShengBTE: A solver of the Boltzmann transport equation for phonons. 1747-1758
• 
  Maciej Rybczynski, Grzegorz Stefanek, Wojciech Broniowski, Piotr Bozek:
  GLISSANDO 2: GLauber Initial-State Simulation AND mOre..., ver. 2. 1759-1772
• 
  Florian Staub:
  SARAH 4: A tool for (not only SUSY) model builders. 1773-1790
• 
  Cathal Ó Broin, Lampros A. A. Nikolopoulos:
  A GPGPU based program to solve the TDSE in intense laser fields through the finite difference approach. 1791-1807
• 
  Tamara Niksic, Nils Paar, D. Vretenar, P. Ring:
  DIRHB - A relativistic self-consistent mean-field framework for atomic nuclei. 1808-1821
• 
  Pierre de Buyl:
  The vmf90 program for the numerical resolution of the Vlasov equation for mean-field systems. 1822-1827
• 
  Jean-Philippe Guillet, Gudrun Heinrich, J. F. von Soden-Fraunhofen:
  Tools for NLO automation: Extension of the golem95C integral library. 1828-1834
• 
  Tobias Toll, Thomas Ullrich:
  The dipole model Monte Carlo generator Sartre 1. 1835-1853

New version announcement

• 
  George Opletal, Timothy C. Petersen, Salvy P. Russo:
  HRMC_2.1: Hybrid Reverse Monte Carlo method with silicon, carbon, germanium and silicon carbide potentials. 1854-1855

Volume 185, Number 7, July 2014

Computational physics

• 
  Bertrand Rouet-Leduc, Kipton Barros, Emmanuel Cieren, Venmugil Elango, Christoph Junghans, Turab Lookman, Jamaludin Mohd-Yusof, Robert S. Pavel, Axel Y. Rivera, Dominic Roehm, Allen L. McPherson, Timothy C. Germann:
  Spatial adaptive sampling in multiscale simulation. 1857-1864
• 
  James E. McClure, Jan F. Prins, Cass T. Miller:
  A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems. 1865-1874
• 
  Kai Kratzer, Joshua T. Berryman, Aaron Taudt, Johannes Zeman, Axel Arnold:
  The Flexible Rare Event Sampling Harness System (FRESHS). 1875-1885
• 
  Wei Choon Tay, Eng Leong Tan:
  Pentadiagonal alternating-direction-implicit finite-difference time-domain method for two-dimensional Schrödinger equation. 1886-1892
• 
  Zhong-Li Liu:
  Muse: Multi-algorithm collaborative crystal structure prediction. 1893-1900
• 
  Un-Hong Wong, Takayuki Aoki, Hon-Cheng Wong:
  Efficient magnetohydrodynamic simulations on distributed multi-GPU systems using a novel GPU Direct-MPI hybrid approach. 1901-1913
• 
  Davide Melazzi, Vito Lancellotti:
  ADAMANT: A surface and volume integral-equation solver for the analysis and design of helicon plasma sources. 1914-1925
• 
  Pjotrs Grisins, Igor E. Mazets:
  Metropolis-Hastings thermal state sampling for numerical simulations of Bose-Einstein condensates. 1926-1931
• 
  Attila Boer:
  GPU-based simulation of the long-range Potts model via parallel tempering. 1932-1937
• 
  Hauke Doerk, Frank Jenko:
  Towards optimal explicit time-stepping schemes for the gyrokinetic equations. 1938-1946
• 
  Sunil Kumar, Mohammad Mehdi Rashidi:
  New analytical method for gas dynamics equation arising in shock fronts. 1947-1954
• 
  Flavio D. Colavecchia:
  Accelerating spectral atomic and molecular collisions methods with graphics processing units. 1955-1964
• 
  Xueshang Feng, Changqing Xiang, Dingkun Zhong, Yufen Zhou, Liping Yang, Xiaopeng Ma:
  SIP-CESE MHD model of solar wind with adaptive mesh refinement of hexahedral meshes. 1965-1980
• 
  Cedric Schreiner, Felix Spanier:
  Wave-particle-interaction in kinetic plasmas. 1981-1986
• 
  James P. Larentzos, John K. Brennan, Joshua D. Moore, Martin Lísal, William D. Mattson:
  Parallel implementation of isothermal and isoenergetic Dissipative Particle Dynamics using Shardlow-like splitting algorithms. 1987-1998
• 
  Kai Liu, Xinyuan Wu:
  Multidimensional ARKN methods for general oscillatory second-order initial value problems. 1999-2007
• 
  S. Gowrisankar, Srinivasan Natesan:
  Robust numerical scheme for singularly perturbed convection-diffusion parabolic initial-boundary-value problems on equidistributed grids. 2008-2019
• 
  Weipeng Hu, Zichen Deng, Yu Zhang:
  Multi-symplectic method for peakon-antipeakon collision of quasi-Degasperis-Procesi equation. 2020-2028
• 
  H. Wan Chan Tseung, C. Beltran:
  A graphics processor-based intranuclear cascade and evaporation simulation. 2029-2033
• 
  A. Idesman, D. Pham:
  Accurate finite element modeling of acoustic waves. 2034-2045
• 
  A. Valentim, Marcos G. E. da Luz, Carlos E. Fiore:
  Determining efficient temperature sets for the simulated tempering method. 2046-2055

Computer programs in physics

• 
  M. Petran, Jean Letessier, Johann Rafelski, Giorgio Torrieri:
  SHARE with CHARM. 2056-2079
• 
  Xiaochuan Ge, Simon J. Binnie, Dario Rocca, Ralph Gebauer, Stefano Baroni:
  turboTDDFT 2.0 - Hybrid functionals and new algorithms within time-dependent density-functional perturbation theory. 2080-2089
• 
  A. V. Smirnov:
  FIESTA 3: Cluster-parallelizable multiloop numerical calculations in physical regions. 2090-2100
• 
  Danilo T. Alves, Edney R. Granhen:
  A computer algebra package for calculation of the energy density produced via the dynamical Casimir effect in one-dimensional cavities. 2101-2114
• 
  Luigi Del Debbio, Nathan Hartland, Steffen Schumann:
  MCgrid: Projecting cross section calculations on grids. 2115-2126
• 
  Elena V. Akhmatskaya, Dmitri Sokolovski, C. Echeverría-Arrondo:
  Numerical Regge pole analysis of resonance structures in elastic, inelastic and reactive state-to-state integral cross sections. 2127-2137
• 
  Max J. Hoffmann, Sebastian Matera, Karsten Reuter:
  kmos: A lattice kinetic Monte Carlo framework. 2138-2150
• 
  Stefano Zaghi:
  OFF, Open source Finite volume Fluid dynamics code: A free, high-order solver based on parallel, modular, object-oriented Fortran API. 2151-2194
• 
  Joachim A. Maruhn, Paul-Gerhard Reinhard, Paul Stevenson, A. Sait Umar:
  The TDHF code Sky3D. 2195-2216

New version announcement

• 
  Panagiotis E. Hadjidoukas, Panagiotis Angelikopoulos, Costas Voglis, Dimitris G. Papageorgiou, Isaac E. Lagaris:
  NDL-v2.0: A new version of the numerical differentiation library for parallel architectures. 2217-2219

Volume 185, Number 8, August 2014

Computational physics

• 
  Jeremy Witzens:
  Ab initio calculation of the deformation potential and photoelastic coefficients of silicon with a non-uniform finite-difference solver based on the local density approximation. 2221-2231
• 
  Rafael Bertolini Frigori:
  Nonextensive lattice gauge theories: Algorithms and methods. 2232-2239
• 
  Hong-Lin Liao, Han-Sheng Shi, Ying Zhao:
  Numerical study of fourth-order linearized compact schemes for generalized NLS equations. 2240-2249

Computer programs in physics

• 
  Adam Alloul, Neil D. Christensen, Céline Degrande, Claude Duhr, Benjamin Fuks:
  FeynRules 2.0 - A complete toolbox for tree-level phenomenology. 2250-2300
• 
  Thomas Müller:
  GeoViS - Relativistic ray tracing in four-dimensional spacetimes. 2301-2308

New version announcements

• 
  Arash A. Mostofi, Jonathan R. Yates, Giovanni Pizzi, Young-Su Lee, Ivo Souza, David Vanderbilt, Nicola Marzari:
  An updated version of wannier90: A tool for obtaining maximally-localised Wannier functions. 2309-2310
• 
  Giovanni Pizzi, Dmitri Volja, Boris Kozinsky, Marco Fornari, Nicola Marzari:
  An updated version of BoltzWann: A code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis. 2311-2312

Volume 185, Number 9, September 2014

Computational physics

• 
  Seikichi Matsuoka, Shinsuke Satake:
  Application of an improved control-variate scheme to local neoclassical transport simulations. 2313-2321

Computer programs in physics

• 
  Benjamin C. Allanach, Peter Athron, Lewis C. Tunstall, Alexander Voigt, A. G. Williams:
  Next-to-minimal SOFTSUSY. 2322-2339
• 
  Mikael Leetmaa, Natalia V. Skorodumova:
  KMCLib: A general framework for lattice kinetic Monte Carlo (KMC) simulations. 2340-2349
• 
  Michal Januszewski, M. Kostur:
  Sailfish: A flexible multi-GPU implementation of the lattice Boltzmann method. 2350-2368
• 
  Prithish Halder, A. Chakraborty, P. Deb Roy, Himadri Sekhar Das:
  Java application for the superposition T-matrix code to study the optical properties of cosmic dust aggregates. 2369-2379

New version announcement

• 
  Raimar Sandner, András Vukics:
  C++QEDv2 Milestone 10: A C++/Python application-programming framework for simulating open quantum dynamics. 2380-2382

Volume 185, Number 10, October 2014

Computational physics

• 
  R. F. Abdul, R. L. Mace:
  A method to generate kappa distributed random deviates for particle-in-cell simulations. 2383-2386
• 
  Zhong Peng, Hong Wei Yang, Rui Weng, Yingjie Gao, Ze Kun Yang:
  A research on the CN-ICCG-FDTD algorithm of plasma photonic crystals and the transmission coefficient of electromagnetic wave. 2387-2390
• 
  Guangye Chen, Luis Chacón:
  An energy- and charge-conserving, nonlinearly implicit, electromagnetic 1D-3V Vlasov-Darwin particle-in-cell algorithm. 2391-2402
• 
  Wenjun Cai, Yushun Wang, Yongzhong Song:
  Derivation of the multisymplectic Crank-Nicolson scheme for the nonlinear Schrödinger equation. 2403-2411
• 
  Khai-Ching Ng, Y. H. Hwang, Tony W. H. Sheu:
  On the accuracy assessment of Laplacian models in MPS. 2412-2426
• 
  Jean Michel D. Sellier, Ivan Dimov:
  The Wigner-Boltzmann Monte Carlo method applied to electron transport in the presence of a single dopant. 2427-2435
• 
  Andreas Eitzlmayr, Gerold Koscher, Johannes G. Khinast:
  A novel method for modeling of complex wall geometries in smoothed particle hydrodynamics. 2436-2448
• 
  Shuying Zhai, Xinlong Feng, Yinnian He:
  Numerical simulation of the three dimensional Allen-Cahn equation by the high-order compact ADI method. 2449-2455
• 
  Stefan J. Eder, Davide Bianchi, Ulrike Cihak-Bayr, András Vernes, Gerhard Betz:
  An analysis method for atomistic abrasion simulations featuring rough surfaces and multiple abrasive particles. 2456-2466
• 
  Ye Fang, Sheng Feng, Ka-Ming Tam, Zhifeng Yun, Juana Moreno, Jagannathan Ramanujam, Mark Jarrell:
  Parallel tempering simulation of the three-dimensional Edwards-Anderson model with compact asynchronous multispin coding on GPU. 2467-2478
• 
  Jerome P. Nilmeier, Jaime Marian:
  A rigorous sequential update strategy for parallel kinetic Monte Carlo simulation. 2479-2486
• 
  Benjamin Ragan-Kelley, John P. Verboncoeur, Ming-Chieh Lin:
  Optimizing physical parameters in 1-D particle-in-cell simulations with Python. 2487-2494
• 
  Massimo Bernaschi, Mauro Bisson, Francesco Salvadore:
  Multi-Kepler GPU vs. multi-Intel MIC for spin systems simulations. 2495-2503
• 
  Yi-An Huang, Yu-Ting Hung, Snow H. Tseng:
  An optical target to eliminate impinging light in a light scattering simulation. 2504-2509
• 
  Walter Rodrigues, Alessandro Pecchia, M. Lopez, Matthias Auf der Maur, Aldo Di Carlo:
  Accelerating atomistic calculations of quantum energy eigenstates on graphic cards. 2510-2518
• 
  Marc Robinson, N. A. Marks:
  NanoCap: A framework for generating capped carbon nanotubes and fullerenes. 2519-2526
• 
  J. M. Franco, Inmaculada Gómez, Luis Rández:
  Optimization of explicit two-step hybrid methods for solving orbital and oscillatory problems. 2527-2537
• 
  Andrea Lani, Mehmet Sarp Yalim, Stefaan Poedts:
  A GPU-enabled Finite Volume solver for global magnetospheric simulations on unstructured grids. 2538-2557
• 
  Miguel Cárdenas-Montes, Juan José Rodríguez-Vázquez, Miguel A. Vega-Rodríguez, Ignacio Sevilla-Noarbe, Eusebio Sánchez Álvaro:
  Performance and precision of histogram calculation on GPUs: Cosmological analysis as a case study. 2558-2565
• 
  Mark Mawson, Alistair J. Revell:
  Memory transfer optimization for a lattice Boltzmann solver on Kepler architecture nVidia GPUs. 2566-2574
• 
  Yousuke Ohno, Rio Yokota, Hiroshi Koyama, Gentaro Morimoto, Aki Hasegawa, Gen Masumoto, Noriaki Okimoto, Yoshinori Hirano, Huda Ibeid, Tetsu Narumi, Makoto Taiji:
  Petascale molecular dynamics simulation using the fast multipole method on K computer. 2575-2585
• 
  Ulf D. Schiller:
  A unified operator splitting approach for multi-scale fluid-particle coupling in the lattice Boltzmann method. 2586-2597
• 
  Jungpyo Lee, John C. Wright:
  A block-tridiagonal solver with two-level parallelization for finite element-spectral codes. 2598-2608
• 
  Matteo Antuono, B. Bouscasse, Andrea Colagrossi, Salvatore Marrone:
  A measure of spatial disorder in particle methods. 2609-2621
• 
  S. Safaei Arshi, A. Zolfaghari, S. M. Mirvakili:
  A multi-objective shuffled frog leaping algorithm for in-core fuel management optimization. 2622-2628
• 
  Sergei V. Chekanov, E. May, Kyle Strand, Peter van Gemmeren:
  ProMC: Input-output data format for HEP applications using varint encoding. 2629-2635

Computer programs in physics

• 
  A. A. Gusev, Ochbadrakh Chuluunbaatar, Sergey I. Vinitsky, A. G. Abrashkevich:
  POTHEA: A program for computing eigenvalues and eigenfunctions and their first derivatives with respect to the parameter of the parametric self-adjoined 2D elliptic partial differential equation. 2636-2654
• 
  Christoph Schimeczek, Günter Wunner:
  Multi-electron systems in strong magnetic fields I: The 2D Landau-Hartree-Fock-Roothaan method. 2655-2662
• 
  Evelio Francisco, Ángel Martín Pendás:
  Electron number distribution functions from molecular wavefunctions. Version 2. 2663-2682
• 
  Miguel Molero-Armenta, Ursula Iturrarán-Viveros, Sofía Aparicio, Margarita González Hernández:
  Optimized OpenCL implementation of the Elastodynamic Finite Integration Technique for viscoelastic media. 2683-2696
• 
  A. H. Markosyan, Alejandro Luque, F. J. Gordillo-Vázquez, Ute Ebert:
  PumpKin: A tool to find principal pathways in plasma chemical models. 2697-2702
• 
  Stephan Buehler, Claude Duhr:
  CHAPLIN - Complex Harmonic Polylogarithms in Fortran. 2703-2713
• 
  Xin Guan, Kristina D. Launey, Mingxia Xie, Lina Bao, Feng Pan, Jerry P. Draayer:
  Numerical algorithm for the standard pairing problem based on the Heine-Stieltjes correspondence and the polynomial approach. 2714-2723
• 
  Israel Joel Koenka, Jorge Sáiz, Peter C. Hauser:
  Instrumentino: An open-source modular Python framework for controlling Arduino based experimental instruments. 2724-2729
• 
  Chun Shen, Fengxian Sun, Xinlin Xia:
  Implementation of density-based solver for all speeds in the framework of OpenFOAM. 2730-2741
• 
  Koki Murano, Tomoyoshi Shimobaba, Atsushi Sugiyama, Naoki Takada, Takashi Kakue, Minoru Oikawa, Tomoyoshi Ito:
  Fast computation of computer-generated hologram using Xeon Phi coprocessor. 2742-2757
• 
  Juan J. Galiana-Merino, Concepción Pla, Angel Fernandez-Cortes, Soledad Cuezva, J. Ortiz, David Benavente:
  EnvironmentalWaveletTool: Continuous and discrete wavelet analysis and filtering for environmental time series. 2758-2770
• 
  Tiziano Peraro:
  Ninja: Automated integrand reduction via Laurent expansion for one-loop amplitudes. 2771-2797

New version announcements

• 
  Thomas Müller:
  Motion4D-library extended. 2798-2799
• 
  Igor M. Sitnik:
  Development of the FUMILI minimization package. 2800
• 
  Mikhail S. Litsarev, Ivan V. Oseledets:
  The DEPOSIT computer code based on the low rank approximations. 2801-2802

Volume 185, Number 11, November 2014

Computational physics

• 
  Hanquan Wang, Zhiguo Xu:
  Projection gradient method for energy functional minimization with a constraint and its application to computing the ground state of spin-orbit-coupled Bose-Einstein condensates. 2803-2808
• 
  Yu-Hang Tang, George E. Karniadakis:
  Accelerating dissipative particle dynamics simulations on GPUs: Algorithms, numerics and applications. 2809-2822
• 
  Yu-Qing Wang, Rui Jiang, Mao-Bin Hu, Qing-Song Wu:
  Phase transition in a mesoscopic ring with multiple diffusive channels. 2823-2828
• 
  Iftikhar Ahmad, Muhammad Maqbool:
  Investigation of the optical properties of P, As and Sb incorporated AlGaX alloys using full potential linearized augmented plane wave method. 2829-2833
• 
  Charalampos Tsitouras, Vasilios N. Katsikis:
  Bounds for variable degree rational L_∞ approximations to the matrix cosine. 2834-2840
• 
  Hongli Yang, Xianyang Zeng, Xinyuan Wu, Zhengliang Ru:
  A simplified Nyström-tree theory for extended Runge-Kutta-Nyström integrators solving multi-frequency oscillatory systems. 2841-2850
• 
  E. G. Evstatiev:
  Application of the phase space action principle to finite-size particle plasma simulations in the drift-kinetic approximation. 2851-2858
• 
  Nabil L. Youssef, Salah Gomaa Elgendi:
  Computing nullity and kernel vectors using NF-package: Counterexamples. 2859-2864
• 
  Lukas Einkemmer, Matthias Wiesenberger:
  A conservative discontinuous Galerkin scheme for the 2D incompressible Navier-Stokes equations. 2865-2873
• 
  Iulian Petrila, Vasile Manta:
  Metropolis Monte Carlo analysis of all-optical switching. 2874-2878
• 
  Sergey V. Utyuzhnikov:
  Towards development of unsteady near-wall interface boundary conditions for turbulence modeling. 2879-2884
• 
  Jesper Kristensen, Nicholas Zabaras:
  Bayesian uncertainty quantification in the evaluation of alloy properties with the cluster expansion method. 2885-2892

Computer programs in physics

• 
  Jakub Benda, Karel Houfek:
  Collisions of electrons with hydrogen atoms I. Package outline and high energy code. 2893-2902
• 
  Jakub Benda, Karel Houfek:
  Collisions of electrons with hydrogen atoms II. Low-energy program using the method of the exterior complex scaling. 2903-2912
• 
  Krzysztof Pachucki, Mariusz Puchalski, V. A. Yerokhin:
  Extended Gaussian quadratures for functions with an end-point singularity of logarithmic type. 2913-2919
• 
  Cristina Paissoni, Dimitrios Spiliotopoulos, Giovanna Musco, Andrea Spitaleri:
  GMXPBSA 2.0: A GROMACS tool to perform MM/PBSA and computational alanine scanning. 2920-2929
• 
  Michal Czakon, Alexander Mitov:
  Top++: A program for the calculation of the top-pair cross-section at hadron colliders. 2930-2938
• 
  Lu-Ping Wan, Jian-Xiong Wang:
  FDCHQHP: A Fortran package for heavy quarkonium hadroproduction. 2939-2949
• 
  Yi Wang, Long-Qing Chen, Zi-Kui Liu:
  YPHON: A package for calculating phonons of polar materials. 2950-2968
• 
  Xavier Antoine, Romain Duboscq:
  GPELab, a Matlab toolbox to solve Gross-Pitaevskii equations I: Computation of stationary solutions. 2969-2991
• 
  Sebastian Boblest, Dirk Meyer, Günter Wunner:
  Multi-electron systems in strong magnetic fields II: A fixed-phase diffusion quantum Monte Carlo application based on trial functions from a Hartree-Fock-Roothaan method. 2992-3000
• 
  Andrzej Daniluk:
  RHEED intensities from two-dimensional heteroepitaxial nanoscale systems. 3001-3009
• 
  Joseph E. Curtis, Hailiang Zhang, Hirsh Nanda:
  SLDMOL: A tool for the structural characterization of thermally disordered membrane proteins. 3010-3015
• 
  Iurii Karpenko, Pasi Huovinen, Marcus Bleicher:
  A 3+1 dimensional viscous hydrodynamic code for relativistic heavy ion collisions. 3016-3027
• 
  Freddie D. Witherden, Antony M. Farrington, Peter E. Vincent:
  PyFR: An open source framework for solving advection-diffusion type problems on streaming architectures using the flux reconstruction approach. 3028-3040
• 
  Vladimir V. Bytev, Mikhail Yu. Kalmykov, Sven-Olaf Moch:
  HYPERgeometric functions DIfferential REduction (HYPERDIRE): MATHEMATICA based packages for differential reduction of generalized hypergeometric functions: F_D and F_S Horn-type hypergeometric functions of three variables. 3041-3058

New version announcements

• 
  Ioan Valeriu Grossu, Daniel Felea, Alexandru Jipa, Calin Besliu, Emil Stan, Oana Ristea, Catalin Ristea, M. Calin, Tiberiu Esanu, Cristian C. Bordeianu, Nicolae Tuturas:
  CMBE v05 - Implementation of a toy-model for chaos analysis of relativistic nuclear collisions at the present BNL energies. 3059-3061
• 
  Augustinas Stepsys, Saulius Mickevicius, Darius Germanas, Ramutis Kazys Kalinauskas:
  HOTB: High precision parallel code for calculation of four-particle harmonic oscillator transformation brackets. 3062-3064
• 
  Alejandro M. Aragón:
  A C++11 implementation of arbitrary-rank tensors for high-performance computing. 3065-3066
• 
  B. Mohammed-Azizi, D. E. Medjadi:
  Single particle calculations for a Woods-Saxon potential with triaxial deformations, and large Cartesian oscillator basis (TRIAXIAL 2014, Third version of the code Triaxial). 3067-3068

Volume 185, Number 12, December 2014

Computational physics

• 
  Sibo Wang, Junbo Xu, Hao Wen:
  The aggregation and diffusion of asphaltenes studied by GPU-accelerated dissipative particle dynamics. 3069-3078
• 
  Dmitry S. Efremenko, Diego G. Loyola, Adrian Doicu, Robert J. D. Spurr:
  Multi-core-CPU and GPU-accelerated radiative transfer models based on the discrete ordinate method. 3079-3089
• 
  Diego González, Sergio M. Davis:
  Fitting of interatomic potentials without forces: A parallel particle swarm optimization algorithm. 3090-3093
• 
  Omar Ramadan:
  Unconditionally stable split-step finite difference time domain formulations for double-dispersive electromagnetic materials. 3094-3098
• 
  Xiaopeng Luo, Zhenzhou Lu, Xin Xu:
  Reproducing kernel technique for high dimensional model representations (HDMR). 3099-3108
• 
  Hylke C. Donker, Hans De Raedt, Kristel Michielsen:
  Event-by-event simulation of a quantum delayed-choice experiment. 3109-3118
• 
  Naima Yahyaoui, Noureddine Sfina, S. Abdi-Ben Nasrallah, Jean-Louis Lazzari, Moncef Said:
  Electron transport through cubic InGaN/AlGaN resonant tunneling diodes. 3119-3126
• 
  David Pfefferlé, Wilfred Anthony Cooper, Jonathan P. Graves, Cyril Misev:
  VENUS-LEVIS and its spline-Fourier interpolation of 3D toroidal magnetic field representation for guiding-centre and full-orbit simulations of charged energetic particles. 3127-3140
• 
  Yuri A. Eremin, Thomas Wriedt:
  New scheme of the Discrete Sources Method for light scattering analysis of a particle breaking interface. 3141-3150
• 
  Zacharoula Kalogiratou, Theodoros Monovasilis, Theodore E. Simos:
  A fourth order modified trigonometrically fitted symplectic Runge-Kutta-Nyström method. 3151-3155
• 
  Ellen Fischermeier, Dominik Bartuschat, Tobias Preclik, Matthieu Marechal, Klaus Mecke:
  Simulation of a hard-spherocylinder liquid crystal with the pe. 3156-3161
• 
  Venera Khoromskaia, Boris N. Khoromskij:
  Grid-based lattice summation of electrostatic potentials by assembled rank-structured tensor approximation. 3162-3174
• 
  Johannes M. Dieterich, David B. Krisiloff, Alexander Gaenko, Florian Libisch, Theresa L. Windus, Mark S. Gordon, Emily A. Carter:
  Shared-memory parallelization of a local correlation multi-reference CI program. 3175-3188
• 
  Jacek Narski, Maurizio Ottaviani:
  Asymptotic Preserving scheme for strongly anisotropic parabolic equations for arbitrary anisotropy direction. 3189-3203
• 
  David P. Starinshak, J. Michael Owen, J. N. Johnson:
  A new parallel algorithm for constructing Voronoi tessellations from distributed input data. 3204-3214
• 
  Grigor Aslanyan:
  Cosmo++: An object-oriented C++ library for cosmology. 3215-3227
• 
  Andreas Krämer, Marco Hülsmann, Thorsten Köddermann, Dirk Reith:
  Automated parameterization of intermolecular pair potentials using global optimization techniques. 3228-3239
• 
  Valentin V. Karasiev, Travis Sjostrom, Samuel B. Trickey:
  Finite-temperature orbital-free DFT molecular dynamics: Coupling Profess and Quantum Espresso. 3240-3249
• 
  Bernd A. Berg:
  Detection of a small shift in a broad distribution. 3250-3258
• 
  Kolahal Bhattacharya, Arnab K. Pal, Gobinda Majumder, Naba K. Mondal:
  Error propagation of the track model and track fitting strategy for the Iron CALorimeter detector in India-based neutrino observatory. 3259-3268
• 
  Orlando Ayala, Hossein Parishani, Liu Chen, Bogdan Rosa, Lian-Ping Wang:
  DNS of hydrodynamically interacting droplets in turbulent clouds: Parallel implementation and scalability analysis using 2D domain decomposition. 3269-3290
• 
  B. Ph. van Milligen, Paul D. Bons:
  Simplified numerical model for clarifying scaling behavior in the intermediate dispersion regime in homogeneous porous media. 3291-3301

Computer programs in physics

• 
  Colin W. Glass, Steffen Reiser, Gábor Rutkai, Stephan Deublein, Andreas Köster, Gabriela Guevara-Carrion, Amer Wafai, Martin Horsch, Martin Bernreuther, Thorsten Windmann, Hans Hasse, Jadran Vrabec:
  ms2: A molecular simulation tool for thermodynamic properties, new version release. 3302-3306
• 
  Tania Loke, Jingbo B. Wang, Y. H. Chen:
  OptQC: An optimized parallel quantum compiler. 3307-3316
• 
  Michael Borinsky:
  Feynman graph generation and calculations in the Hopf algebra of Feynman graphs. 3317-3330
• 
  A. Gehrmann-De Ridder, Thomas Gehrmann, E. W. N. Glover, Gudrun Heinrich:
  EERAD3: Event shapes and jet rates in electron-positron annihilation at order α_S³. 3331-3340
• 
  Alexander Gusev, Ochbadrakh Chuluunbaatar, Sergey I. Vinitsky, A. G. Abrashkevich:
  KANTBP 3.0: New version of a program for computing energy levels, reflection and transmission matrices, and corresponding wave functions in the coupled-channel adiabatic approach. 3341-3343
• 
  Huy Nguyen, Hao Shi, Jie Xu, Shiwei Zhang:
  CPMC-Lab: A Matlab package for Constrained Path Monte Carlo calculations. 3344-3357
• 
  Laurent Orgogozo, Nicolas Renon, Cyprien Soulaine, Florent Hénon, Sat Kumar Tomer, David Labat, Oleg S. Pokrovsky, Muddu Sekhar, Rachid Ababou, Michel Quintard:
  An open source massively parallel solver for Richards equation: Mechanistic modelling of water fluxes at the watershed scale. 3358-3371
• 
  Julien Baglio, Ramona Gröber, Margarete Mühlleitner, D. T. Nhung, Heidi Rzehak, Michael Spira, J. Streicher, K. Walz:
  NMSSMCALC: A program package for the calculation of loop-corrected Higgs boson masses and decay widths in the (complex) NMSSM. 3372-3391
• 
  Yanbiao Chu, Pierre Gautreau, Tarek Ragab, Cemal Basaran:
  An accelerated algorithm for full band electron-phonon scattering rate computation. 3392-3397
• 
  Yukinobu Koyama, Atsuki Shinbori, Yoshimasa Tanaka, Tomoaki Hori, Masahito Nose, Satoshi Oimatsu:
  An Interactive Data Language software package to calculate ionospheric conductivity by using numerical models. 3398-3405
• 
  George F. Bertsch, Luis Miguel Robledo:
  Combinatorial level densities by the real-time method. 3406-3411
• 
  Roberto Contino, Margherita Ghezzi, Christophe Grojean, Margarete Mühlleitner, Michael Spira:
  eHDECAY: An implementation of the Higgs effective Lagrangian into HDECAY. 3412-3423
• 
  Chao Li, Hailing Xiong:
  3D simulation of the Cluster-Cluster Aggregation model. 3424-3429
• 
  Michele Dolfi, Bela Bauer, Sebastian Keller, Alexandr Kosenkov, Timothée Ewart, Adrian Kantian, Thierry Giamarchi, Matthias Troyer:
  Matrix product state applications for the ALPS project. 3430-3440