Journal of the American Medical Informatics Association, Volume 21

Volume 21, Number 1, January 2014

Highlights

• 
  Lucila Ohno-Machado:
  The role of scientific publication in times of change. 1

Perspectives

• 
  Mark Gaynor, Leslie Lenert, Kristin D. Wilson, Scott O. Bradner:
  Why common carrier and network neutrality principles apply to the Nationwide Health Information Network (NWHIN). 2-7
• 
  Vojtech Huser, James J. Cimino:
  Don't take your EHR to heaven, donate it to science: legal and research policies for EHR post mortem. 8-12
• 
  Robert S. Rudin, David W. Bates:
  Let the left hand know what the right is doing: a vision for care coordination and electronic health records. 13-16

Brief communication

• 
  Changsun Kim, Bo Seung Kang, Hyuk Joong Choi, Young Joo Lee, Gu Hyun Kang, Wook-Jin Choi, In Ho Kwon:
  Nationwide online social networking for cardiovascular care in Korea using Facebook. 17-22
• 
  Anurag Gupta, Ali S. Raja, Ramin Khorasani:
  Examining clinical decision support integrity: is clinician self-reported data entry accurate? 23-26
• 
  Richard Khor, Wai-Kuan Yip, Mathias Bressel, William Rose, Gillian Duchesne, Farshad Foroudi:
  Practical implementation of an existing smoking detection pipeline and reduced support vector machine training corpus requirements. 27-30
• 
  Son Doan, Ko-Wei Lin, Mike Conway, Lucila Ohno-Machado, Alexander Hsieh, Stephanie Feudjio Feupe, Asher Garland, Mindy K. Ross, Xiaoqian Jiang, Seena Farzaneh, Rebecca Walker, Neda Alipanah, Jing Zhang, Hua Xu, Hyeoneui Kim:
  PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. 31-36

Research and applications

• 
  Hayley Goldbach, Aileen Y. Chang, Andrea Kyer, Dineo Ketshogileng, Lynne Taylor, Amit Chandra, Matthew Dacso, Shiang-Ju Kung, Taatske Rijken, Paul A. Fontelo, Ryan Littman-Quinn, Anne K. Seymour, Carrie L. Kovarik:
  Evaluation of generic medical information accessed via mobile phones at the point of care in resource-limited settings. 37-42
• 
  Yun-Xian Ho, Qingxia Chen, Hui Nian, Kevin B. Johnson:
  An assessment of pharmacists' readiness for paperless labeling: a national survey. 43-48
• 
  Ryen W. White, Eric Horvitz:
  From health search to healthcare: explorations of intention and utilization via query logs and user surveys. 49-55
• 
  Melanie Frances Larizza, Ingrid Zukerman, Fabian Bohnert, Lucy Busija, Sharon Ann Bentley, R. Andrew Russell, Gwyneth Rees:
  In-home monitoring of older adults with vision impairment: exploring patients', caregivers' and professionals' views. 56-63
• 
  Mustafa Fidahussein, Daniel J. Vreeman:
  A corpus-based approach for automated LOINC mapping. 64-72
• 
  Holly Jordan Lanham, Dean F. Sittig, Luci K. Leykum, Michael L. Parchman, Jacqueline A. Pugh, Reuben R. McDaniel Jr.:
  Understanding differences in electronic health record (EHR) use: linking individual physicians' perceptions of uncertainty and EHR use patterns in ambulatory care. 73-81
• 
  Satya Sanket Sahoo, Samden D. Lhatoo, Deepak K. Gupta, Licong Cui, Meng Zhao, Catherine P. Jayapandian, Alireza Bozorgi, Guo-Qiang Zhang:
  Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care. 82-89
• 
  Rong Xu, QuanQiu Wang:
  Toward creation of a cancer drug toxicity knowledge base: automatically extracting cancer drug-side effect relationships from the literature. 90-96
• 
  Erel Joffe, Michael J. Byrne, Phillip Reeder, Jorge R. Herskovic, Craig W. Johnson, Allison B. McCoy, Dean F. Sittig, Elmer V. Bernstam:
  A benchmark comparison of deterministic and probabilistic methods for defining manual review datasets in duplicate records reconciliation. 97-104
• 
  Rao Muhammad Adeel Nawab, Mark Stevenson, Paul D. Clough:
  Comparing Medline citations using modified N-grams. 105-110
• 
  Julia Adler-Milstein, Elettra Ronchi, Genna R. Cohen, Laura A. Pannella Winn, Ashish K. Jha:
  Benchmarking health IT among OECD countries: better data for better policy. 111-116
• 
  Sean W. Smith, Ross Koppel:
  Healthcare information technology's relativity problems: a typology of how patients' physical reality, clinicians' mental models, and healthcare information technology differ. 117-131
• 
  James W. Keck, John T. Redd, James E. Cheek, Larry J. Layne, Amy V. Groom, Sassa Kitka, Michael G. Bruce, Anil Suryaprasad, Nancy L. Amerson, Theresa Cullen, Ralph T. Bryan, Thomas W. Hennessy:
  Influenza surveillance using electronic health records in the American Indian and Alaska Native population. 132-138
• 
  Rein Vos, Sil Aarts, Erik M. van Mulligen, Job Metsemakers, Martin P. van Boxtel, Frans Verhey, Marjan van den Akker:
  Finding potentially new multimorbidity patterns of psychiatric and somatic diseases: exploring the use of literature-based discovery in primary care research. 139-145
• 
  Nerissa S. Bauer, Aaron E. Carroll, Stephen M. Downs:
  Understanding the acceptability of a computer decision support system in pediatric primary care. 146-153

Reviews

• 
  Joanna Abraham, Thomas George Kannampallil, Vimla L. Patel:
  A systematic review of the literature on the evaluation of handoff tools: implications for research and practice. 154-162
• 
  Maxim Topaz, Nadya Golfenshtein, Kathryn H. Bowles:
  The Omaha System: a systematic review of the recent literature. 163-170
• 
  Kimberly Shoenbill, Norman Fost, Umberto Tachinardi, Eneida A. Mendonça:
  Genetic data and electronic health records: a discussion of ethical, logistical and technological considerations. 171-180

Case reports

• 
  Terhilda Garrido, Sudheen Kumar, John Lekas, Mark Lindberg, Dhanyaja Kadiyala, Alan Whippy, Barbara Crawford, Jed Weissberg:
  e-Measures: insight into the challenges and opportunities of automating publicly reported quality measures. 181-184
• 
  Wayne B. Bradford, John F. Hurdle, Bernie LaSalle, Julio C. Facelli:
  Development of a HIPAA-compliant environment for translational research data and analytics. 185-189

PostScript

• 
  Elena Gospodarevskaya, Johanna I. Westbrook:
  Correspondence: Call for discussion about the framework for categorizing economic evaluations of health information systems and assessing their quality. 190-191

Messages from AMIA

• 
  Blackford Middleton, Kevin M. Fickenscher:
  Putting the 'i' in iHealth. 192

Volume 21, Number 2, March 2014

Highlights

• 
  Lucila Ohno-Machado:
  NIH's Big Data to Knowledge initiative and the advancement of biomedical informatics. 193

Editorial

• 
  Philip E. Bourne:
  What Big Data means to me. 194

Perspectives

• 
  Richard D. LeDuc, Matthew Vaughn, John M. Fonner, Michael Sullivan, James G. Williams, Philip D. Blood, James Taylor, William K. Barnett:
  Leveraging the national cyberinfrastructure for biomedical research. 195-199
• 
  Jessica D. Tenenbaum, Susanna-Assunta Sansone, Melissa A. Haendel:
  A sea of standards for omics data: sink or swim? 200-203
• 
  George Hripcsak, Meryl Bloomrosen, Patti Flatley Brennan, Christopher G. Chute, James J. Cimino, Don E. Detmer, Margo Edmunds, Peter J. Embí, Melissa M. Goldstein, William Ed Hammond, Gail M. Keenan, Steven E. Labkoff, Shawn P. Murphy, Charles Safran, Stuart M. Speedie, Howard R. Strasberg, Freda Temple, Adam B. Wilcox:
  Health data use, stewardship, and governance: ongoing gaps and challenges: a report from AMIA's 2012 Health Policy Meeting. 204-211

Reviews

• 
  Hye-Chung Kum, Ashok K. Krishnamurthy, Ashwin Machanavajjhala, Michael K. Reiter, Stanley C. Ahalt:
  Privacy preserving interactive record linkage (PPIRL). 212-220
• 
  Chaitanya P. Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J. Embí, Noémie Elhadad, Stephen B. Johnson, Albert M. Lai:
  A review of approaches to identifying patient phenotype cohorts using electronic health records. 221-230

Research and applications

• 
  Adler J. Perotte, Rimma Pivovarov, Karthik Natarajan, Nicole Gray Weiskopf, Frank D. Wood, Noemie Elhadad:
  Diagnosis code assignment: models and evaluation metrics. 231-237
• 
  Adam Sateriale, Kovi Bessoff, Indra Neil Sarkar, Christopher D. Huston:
  Drug repurposing: mining protozoan proteomes for targets of known bioactive compounds. 238-244
• 
  Mei Liu, Ruichu Cai, Yong Hu, Michael E. Matheny, Jingchun Sun, Jun Hu, Hua Xu:
  Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning. 245-251
• 
  Abdullah-Al Mamun, Tian Mi, Robert H. Aseltine, Sanguthevar Rajasekaran:
  Efficient sequential and parallel algorithms for record linkage. 252-262
• 
  Satya Sanket Sahoo, Catherine P. Jayapandian, Gaurav Garg, Farhad Kaffashi, Stephanie Chung, Alireza Bozorgi, Chien-Hung Chen, Kenneth A. Loparo, Samden D. Lhatoo, Guo-Qiang Zhang:
  Heart beats in the cloud: distributed analysis of electrophysiological 'Big Data' using cloud computing for epilepsy clinical research. 263-271
• 
  Danning He, Simon C. Mathews, Anthony N. Kalloo, Susan Hutfless:
  Mining high-dimensional administrative claims data to predict early hospital readmissions. 272-279
• 
  Jason C. Goldwater, Nancy J. Kwon, Ashley Nathanson, Alison E. Muckle, Alexa Brown, Kerri Cornejo:
  The use of open source electronic health records within the federal safety net. 280-284
• 
  Kathrin Dentler, Mattijs E. Numans, Annette ten Teije, Ronald Cornet, Nicolette de Keizer:
  Formalization and computation of quality measures based on electronic medical records. 285-291
• 
  Anne Rosemary Tate, Natalia Beloff, Balques Al-Radwan, Joss Wickson, Shivani Puri, Timothy Williams, Tjeerd Pieter van Staa, Adrian Bleach:
  Exploiting the potential of large databases of electronic health records for research using rapid search algorithms and an intuitive query interface. 292-298
• 
  Sungrim Moon, Serguei V. S. Pakhomov, Nathan Liu, James O. Ryan, Genevieve B. Melton:
  A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources. 299-307
• 
  Ying Li, Hojjat Salmasian, Santiago Vilar, Herbert S. Chase, Carol Friedman, Ying Wei:
  A method for controlling complex confounding effects in the detection of adverse drug reactions using electronic health records. 308-314
• 
  Eren Gultepe, Jeffrey P. Green, Hien Nguyen, Jason Adams, Timothy E. Albertson, Ilias Tagkopoulos:
  From vital signs to clinical outcomes for patients with sepsis: a machine learning basis for a clinical decision support system. 315-325
• 
  Subramani Mani, Asli Ozdas, Constantin F. Aliferis, Huseyin Atakan Varol, Qingxia Chen, Randy J. Carnevale, Yukun Chen, Joann Romano-Keeler, Hui Nian, Jörn-Hendrik Weitkamp:
  Medical decision support using machine learning for early detection of late-onset neonatal sepsis. 326-336
• 
  Jimeng Sun, Candace D. McNaughton, Ping Zhang, Adam Perer, Aris Gkoulalas-Divanis, Joshua C. Denny, Jacqueline Kirby, Thomas A. Lasko, Alexander Saip, Bradley A. Malin:
  Predicting changes in hypertension control using electronic health records from a chronic disease management program. 337-344
• 
  Marc B. Rosenman, Jinghua He, Joel Martin, Kavitha Nutakki, George J. Eckert, Kathleen Lane, Irmina Gradus-Pizlo, Siu L. Hui:
  Database queries for hospitalizations for acute congestive heart failure: flexible methods and validation based on set theory. 345-352
• 
  Srinivasan V Iyer, Rave Harpaz, Paea LePendu, Anna Bauer-Mehren, Nigam H. Shah:
  Mining clinical text for signals of adverse drug-drug interactions. 353-362
• 
  Pinghao Li, Xiaoqian Jiang, Shuang Wang, Jihoon Kim, Hongkai Xiong, Lucila Ohno-Machado:
  HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. 363-373

Brief communication

• 
  Israel T. Agaku, Akinyele O. Adisa, Olalekan A. Ayo-Yusuf, Gregory N. Connolly:
  Concern about security and privacy, and perceived control over collection and use of health information are related to withholding of health information from healthcare providers. 374-378

Case report

• 
  Jeffrey W. Pennington, Byron Ruth, Michael J. Italia, Jeffrey M. Miller, Stacey Wrazien, Jennifer G. Loutrel, E. Bryan Crenshaw, Peter S. White:
  Harvest: an open platform for developing web-based biomedical data discovery and reporting applications. 379-383

Messages from AMIA

• 
  Blackford Middleton:
  First diplomates board certified in the subspecialty of clinical informatics. 384

Volume 21, Number 3, May 2014

Highlights

• 
  Lucila Ohno-Machado:
  Informatics support for clinical decisions. 385

Perspective

• 
  Fernando Martín-Sánchez, Kathleen Gray, Riccardo Bellazzi, Guillermo López-Campos:
  Exposome informatics: considerations for the design of future biomedical research information systems. 386-390

Research and applications

• 
  Robyn Tamblyn, Lise Poissant, Allen Huang, Nancy Winslade, Christian M. Rochefort, Teresa Moraga, Pamela Doran:
  Estimating the information gap between emergency department records of community medication compared to on-line access to the community-based pharmacy records. 391-398
• 
  Jae-Yoon Jung, Todd F. DeLuca, Tristan H. Nelson, Dennis P. Wall:
  A literature search tool for intelligent extraction of disease-associated genes. 399-405
• 
  Todd Lingren, Louise Deléger, Katalin Molnár, Haijun Zhai, Jareen Meinzen-Derr, Megan Kaiser, Laura Stoutenborough, Qi Li, Imre Solti:
  Evaluating the impact of pre-annotation on annotation speed and potential bias: natural language processing gold standard development for clinical named entity recognition in clinical trial announcements. 406-413
• 
  Enrico W. Coiera:
  Communication spaces. 414-422
• 
  Mehmet Kayaalp, Allen C. Browne, Fiona M. Callaghan, Zeyno A. Dodd, Guy Divita, Selcuk Ozturk, Clement J. McDonald:
  The pattern of name tokens in narrative clinical text and a comparison of five systems for redacting them. 423-431
• 
  Jim Bellows, Samir Patel, Scott S. Young:
  Use of IndiGO individualized clinical guidelines in primary care. 432-437
• 
  Sarah A. Collins, Ann C. Hurley, Frank Y. Chang, Anisha R. Illa, Angela Benoit, Sarah Laperle, Patricia C. Dykes:
  Content and functional specifications for a standards-based multidisciplinary rounding tool to maintain continuity across acute and critical care. 438-447
• 
  Dmitriy Dligach, Steven Bethard, Lee Becker, Timothy A. Miller, Guergana K. Savova:
  Discovering body site and severity modifiers in clinical texts. 448-454
• 
  Ying P. Tabak, Xiaowu Sun, Carlos M. Nunez, Richard S. Johannes:
  Using electronic health record data to develop inpatient mortality predictive model: Acute Laboratory Risk of Mortality Score (ALaRMS). 455-463
• 
  Adam Wright, Joan S. Ash, Jessica L. Erickson, Joe A. Wasserman, Arwen Bunce, Ana Stanescu, Daniel St Hilaire, Morgan Panzenhagen, Eric Gebhardt, Carmit McMullen, Blackford Middleton, Dean F. Sittig:
  A qualitative study of the activities performed by people involved in clinical decision support: recommended practices for success. 464-472
• 
  Anuj K. Dalal, Christopher L. Roy, Eric G. Poon, Deborah H. Williams, Nyryan Nolido, Cathy Yoon, Jonas Budris, Tejal K. Gandhi, David W. Bates, Jeffrey L. Schnipper:
  Impact of an automated email notification system for results of tests pending at discharge: a cluster-randomized controlled trial. 473-480
• 
  Karen C. Nanji, Jeffrey M. Rothschild, Jennifer J. Boehne, Carol A. Keohane, Joan S. Ash, Eric G. Poon:
  Unrealized potential and residual consequences of electronic prescribing on pharmacy workflow in the outpatient pharmacy. 481-486
• 
  Karen C. Nanji, Sarah P. Slight, Diane L. Seger, Insook Cho, Julie M. Fiskio, Lisa M. Redden, Lynn A. Volk, David W. Bates:
  Overrides of medication-related clinical decision support alerts in outpatients. 487-491
• 
  Zoe Morrison, Bernard Fernando, Dipak Kalra, Kathrin M. Cresswell, Aziz Sheikh:
  National evaluation of the benefits and risks of greater structuring and coding of the electronic health record: exploratory qualitative investigation. 492-500
• 
  Quang Nguyen, Hamed Valizadegan, Milos Hauskrecht:
  Learning classification models with soft-label information. 501-508
• 
  Vishnu Mohan, Patricia A. Abbott, Shelby Acteson, Eta S. Berner, Corkey Devlin, William Ed Hammond, Rita Kukafka, William R. Hersh:
  Design and evaluation of the ONC health information technology curriculum. 509-516

Brief communication

• 
  Brian E. Dixon, Abdulrahman Mohammed Jabour, Erin O'Kelly Phillips, David G. Marrero:
  An informatics approach to medication adherence assessment and improvement using clinical, billing, and patient-entered data. 517-521
• 
  Barry R. Goldspiel, Willy Albert Flegel, Gary DiPatrizio, Tristan Sissung, Sharon D. Adams, Scott R. Penzak, Leslie G. Biesecker, Thomas A. Fleisher, Jharana J. Patel, David Herion, William D. Figg, Juan J. L. Lertora, Jon W. McKeeby:
  Integrating pharmacogenetic information and clinical decision support into the electronic health record. 522-528
• 
  Jorge A. Gálvez, Luis M. Ahumada, Allan F. Simpao, Elaina E. Lin, Christopher P. Bonafide, Dhruv Choudhry, William R. England, Abbas F. Jawad, David Friedman, Debora A. Sesok-Pizzini, Mohamed A. Rehman:
  Visual analytical tool for evaluation of 10-year perioperative transfusion practice at a children's hospital. 529-534

Reviews

• 
  Marie-Pierre Gagnon, Édith-Romy Nsangou, Julie Payne-Gagnon, Sonya Grenier, Claude Sicotte:
  Barriers and facilitators to implementing electronic prescription: a systematic review of user groups' perceptions. 535-541
• 
  Stacy Cooper Bailey, Lisa T. Belter, Anjali U. Pandit, Delesha M. Carpenter, Eamon Carlos, Michael S. Wolf:
  The availability, functionality, and quality of mobile applications supporting medication self-management. 542-546
• 
  Corinne M. Hohl, Andrei Karpov, Lisa Reddekopp, Jürgen Stausberg:
  ICD-10 codes used to identify adverse drug events in administrative data: a systematic review. 547-557

Case reports

• 
  Adam B. Landman, Lisa Redden, Pamela M. Neri, Stephen Poole, Jan Horsky, Ali S. Raja, Charles N. Pozner, Gordon D. Schiff, Eric G. Poon:
  Using a medical simulation center as an electronic health record usability laboratory. 558-563
• 
  Benjamin P. Rosenbaum, Nikolay Silkin, Randolph A. Miller:
  Easily configured real-time CPOE Pick Off Tool supporting focused clinical research and quality improvement. 564-568
• 
  Allie D. Woods, David P. Mulherin, Allen J. Flynn, James G. Stevenson, Christopher R. Zimmerman, Bruce W. Chaffee:
  Clinical decision support for atypical orders: detection and warning of atypical medication orders submitted to a computerized provider order entry system. 569-573

Messages from AMIA

• 
  Blackford Middleton:
  Chairman's column: AMIA's policy priorities for 2014. 574

Volume 21, Number 4, July 2014

Highlights

• 
  Lucila Ohno-Machado:
  Networking the country to promote health and scientific discovery. 575

Editorial

• 
  Francis S. Collins, Kathy L. Hudson, Josephine P. Briggs, Michael S. Lauer:
  PCORnet: turning a dream into reality. 576-577

Focus on building a network for patient-centered outcomes research

• 
  Rachael L. Fleurence, Lesley H. Curtis, Robert M. Califf, Richard Platt, Joe V. Selby, Jeffrey S. Brown:
  Brief communication: Launching PCORnet, a national patient-centered clinical research network. 578-582
• 
  Sarah E. Daugherty, Sarita Wahba, Rachael Fleurence:
  Brief communication: Patient-powered research networks: building capacity for conducting patient-centered clinical outcomes research. 583-586
• 
  Rainu Kaushal, George Hripcsak, Deborah D. Ascheim, Toby Bloom, Thomas R. Campion Jr., Arthur L. Caplan, Brian P. Currie, Thomas Check, Emme Levin Deland, Marc N. Gourevitch, Raffaella Hart, Carol R. Horowitz, Isaac Kastenbaum, Arthur Aaron Levin, Alexander F. H. Low, Paul Meissner, Parsa Mirhaji, Harold Alan Pincus, Charles Scaglione, Donna Shelley, Jonathan N. Tobin:
  Brief communication: Changing the research landscape: the New York City Clinical Data Research Network. 587-590
• 
  Jennifer E. DeVoe, Rachel Gold, Erika Cottrell, Vance Bauer, Andrew Brickman, Jon Puro, Christine Nelson, Kenneth H. Mayer, Abigail Sears, Timothy E. Burdick, Jonathan Merrell, Paul Matthews, Scott Fields:
  Brief communication: The ADVANCE network: accelerating data value across a national community health center network. 591-595
• 
  Elizabeth A. McGlynn, Tracy A. Lieu, Mary L. Durham, Alan Bauck, Reesa Laws, Alan S. Go, Jersey Chen, Heather Spencer Feigelson, Douglas A. Corley, Deborah Rohm Young, Andrew F. Nelson, Arthur J. Davidson, Leo S. Morales, Michael G. Kahn:
  Brief communication: Developing a data infrastructure for a learning health system: the PORTAL network. 596-601
• 
  Christopher B. Forrest, Peter A. Margolis, L. Charles Bailey, Keith Marsolo, Mark A. Del Beccaro, Jonathan A. Finkelstein, David E. Milov, Veronica J. Vieland, Bryan A. Wolf, Feliciano B. Yu, Michael G. Kahn:
  Brief communication: PEDSnet: a National Pediatric Learning Health System. 602-606
• 
  Abel N. Kho, Denise M. Hynes, Satyender Goel, Anthony E. Solomonides, Ron Price, Bala Hota, Shannon A. Sims, Neil Bahroos, Francisco Angulo, William E. Trick, Elizabeth Tarlov, Fred D. Rachman, Andrew Hamilton, Erin O. Kaleba, Sameer Badlani, Samuel L. Volchenboum, Jonathan C. Silverstein, Jonathan N. Tobin, Michael A. Schwartz, David Levine, John B. Wong, Richard H. Kennedy, Jerry A. Krishnan, David O. Meltzer, John M. Collins, Terry Mazany:
  Brief communication: CAPriCORN: Chicago Area Patient-Centered Outcomes Research Network. 607-611
• 
  Anjum Khurshid, Elizabeth Nauman, Thomas Carton, Ron Horswell:
  Brief communication: Louisiana Clinical Data Research Network: establishing an infrastructure for efficient conduct of clinical research. 612-614
• 
  Kenneth D. Mandl, Isaac S. Kohane, Douglas McFadden, Griffin M. Weber, Marc D. Natter, Joshua C. Mandel, Sebastian Schneeweiss, Sarah Weiler, Jeffrey G. Klann, Jonathan P. Bickel, William G. Adams, Yaorong Ge, Xiaobo Zhou, James Perkins, Keith Marsolo, Elmer V. Bernstam, John Showalter, Alexander Quarshie, Elizabeth O. Ofili, George Hripcsak, Shawn N. Murphy:
  Brief communication: Scalable Collaborative Infrastructure for a Learning Healthcare System (SCILHS): Architecture. 615-620
• 
  Lucila Ohno-Machado, Zia Agha, Douglas S. Bell, Lisa Dahm, Michele E. Day, Jason N. Doctor, Davera Gabriel, Maninder K. Kahlon, Katherine K. Kim, Michael A. Hogarth, Michael E. Matheny, Daniella Meeker, Jonathan R. Nebeker:
  Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research. 621-626
• 
  S. Trent Rosenbloom, Paul A. Harris, Jill M. Pulley, Melissa A. Basford, Jason Grant, Allison DuBuisson, Russell L. Rothman:
  Brief communication: The Mid-South Clinical Data Research Network. 627-632
• 
  Waqas Amin, Fuchiang (Rich) Tsui, Charles D. Borromeo, Cynthia H. Chuang, Jeremy U. Espino, Daniel Ford, Wenke Hwang, Wishwa Kapoor, Harold P. Lehmann, G. Daniel Martich, Sally C. Morton, Anuradha Paranjape, William Shirey, Aaron Sorensen, Michael J. Becich, Rachel Hess:
  Brief communication: PaTH: towards a learning health system in the Mid-Atlantic region. 633-636
• 
  Lemuel R. Waitman, Lauren S. Aaronson, Prakash M. Nadkarni, Daniel W. Connolly, James R. Campbell:
  Brief communication: The Greater Plains Collaborative: a PCORnet Clinical Research Data Network. 637-641

Research and applications

• 
  Hua Min, Riki Ohira, Michael A. Collins, Jessica Bondy, Nancy E. Avis, Olga Tchuvatkina, Paul K. Courtney, Richard P. Moser, Abdul R. Shaikh, Bradford W. Hesse, Mary Cooper, Dianne M. Reeves, Bob Lanese, Cindy Helba, Suzanne M. Miller, Eric A. Ross:
  Sharing behavioral data through a grid infrastructure using data standards. 642-649
• 
  Jeffrey G. Klann, Michael D. Buck, Jeffrey S. Brown, Marc Hadley, Richard Elmore, Griffin M. Weber, Shawn N. Murphy:
  Query Health: standards-based, cross-platform population health surveillance. 650-656
• 
  Carolyn L. Turvey, Dawn M. Klein, Gemmae M. Fix, Timothy P. Hogan, Susan S. Woods, Steven R. Simon, Mary Charlton, Mary S. Vaughan-Sarrazin, Donna M. Zulman, Lilian Dindo, Bonnie J. Wakefield, Gail Graham, Kim M. Nazi:
  Blue Button use by patients to access and share health record information using the Department of Veterans Affairs' online patient portal. 657-663
• 
  Jessica S. Ancker, Melissa C. Miller, Vaishali Patel, Rainu Kaushal:
  Sociotechnical challenges to developing technologies for patient access to health information exchange data. 664-670
• 
  Niam Yaraghi, Anna Ye Du, Raj Sharman, Ram D. Gopal, Ram Ramesh, Ranjit Singh, Gurdev Singh:
  Professional and geographical network effects on healthcare information exchange growth: does proximity really matter? 671-678
• 
  Elizabeth A. Chrischilles, Juan Pablo Hourcade, William Doucette, David Eichmann, Brian M. Gryzlak, Ryan R. Lorentzen, Kara Wright, Elena Letuchy, Michael Mueller, Karen Farris, Barcey Levy:
  Personal health records: a randomized trial of effects on elder medication safety. 679-686
• 
  Kenneth D. Mandl, Marion McNabb, Norman Marks, Elissa R. Weitzman, Skyler Kelemen, Emma M. Eggleston, Maryanne Quinn:
  Participatory surveillance of diabetes device safety: a social media-based complement to traditional FDA reporting. 687-691
• 
  Pashiera Barkhuysen, Wim de Grauw, Reinier Akkermans, José Donkers, Henk Schers, Marion C. J. Biermans:
  Is the quality of data in an electronic medical record sufficient for assessing the quality of primary care? 692-698
• 
  Jenna Wiens, John V. Guttag, Eric Horvitz:
  A study in transfer learning: leveraging data from multiple hospitals to enhance hospital-specific predictions. 699-706
• 
  Christopher Pearce, Michael Bainbridge:
  A personally controlled electronic health record for Australia. 707-713

Brief communication

• 
  Katherine K. Kim, Dennis K. Browe, Holly C. Logan, Roberta Holm, Lori Hack, Lucila Ohno-Machado:
  Data governance requirements for distributed clinical research networks: triangulating perspectives of diverse stakeholders. 714-719
• 
  John Heintzman, Steffani R. Bailey, Megan J. Hoopes, Thuy Le, Rachel Gold, Jean P. O'Malley, Stuart Cowburn, Miguel Marino, Alexander H. Krist, Jennifer E. DeVoe:
  Agreement of Medicaid claims and electronic health records for assessing preventive care quality among adults. 720-724
• 
  James Wilson, Farath N. Arshad, Nonso Nnamoko, A. Whiteman, J. Ring, Bibhas Roy:
  Patient-reported outcome measures: an on-line system empowering patient choice. 725-729

Reviews

• 
  John H. Holmes, Thomas E. Elliott, Jeffrey S. Brown, Marsha A. Raebel, Arthur J. Davidson, Andrew F. Nelson, Annie Chung, Pierre La Chance, John F. Steiner:
  Clinical research data warehouse governance for distributed research networks in the USA: a systematic review of the literature. 730-736
• 
  Traber Davis Giardina, Shailaja Menon, Danielle E. Parrish, Dean F. Sittig, Hardeep Singh:
  Patient access to medical records and healthcare outcomes: a systematic review. 737-741
• 
  Jennifer E. Prey, Janet Woollen, Lauren Wilcox, Alexander D. Sackeim, George Hripcsak, Suzanne Bakken, Susan Restaino, Steven Feiner, David K. Vawdrey:
  Patient engagement in the inpatient setting: a systematic review. 742-750
• 
  Terese Otte-Trojel, Antoinette de Bont, Thomas G. Rundall, Joris van de Klundert:
  How outcomes are achieved through patient portals: a realist review. 751-757

Case report

• 
  Torsten Rohlfing, Kevin Cummins, Trevor Henthorn, Weiwei Chu, B. Nolan Nichols:
  N-CANDA data integration: anatomy of an asynchronous infrastructure for multi-site, multi-instrument longitudinal data capture. 758-762

Volume 21, Number 5, September 2014

Highlights

• 
  Lucila Ohno-Machado:
  Structuring text and standardizing data for clinical and population health applications. 763

Perspectives

• 
  Alexander H. Krist, John W. Beasley, Jesse C. Crosson, David C. Kibbe, Michael S. Klinkman, Christoph U. Lehmann, Chester H. Fox, Jason M. Mitchell, James W. Mold, Wilson D. Pace, Kevin A. Peterson, Robert L. Phillips, Robert Post, Jon Puro, Michael Raddock, Ray Simkus, Steven E. Waldren:
  Electronic health record functionality needed to better support primary care. 764-771
• 
  Thomas W. Feeley, George W. Sledge, Laura Levit, Patricia A. Ganz:
  Improving the quality of cancer care in America through health information technology. 772-775

Focus on biomedical natural language processing and data modeling

• 
  Qi Li, Kristin Melton, Todd Lingren, Eric S. Kirkendall, Eric S. Hall, Haijun Zhai, Yizhao Ni, Megan Kaiser, Laura Stoutenborough, Imre Solti:
  Research and applications: Phenotyping for patient safety: algorithm development for electronic health record based automated adverse event and medical error detection in neonatal intensive care. 776-784
• 
  William V. Bobo, Jyotishman Pathak, Hilal Maradit Kremers, Barbara P. Yawn, Scott M. Brue, Cynthia J. Stoppel, Paul E. Croarkin, Jennifer St Sauver, Mark A. Frye, Walter A. Rocca:
  Research and applications: An electronic health record driven algorithm to identify incident antidepressant medication users. 785-791
• 
  Li-Hui Lee, Anika Groß, Michael Hartung, Der-Ming Liou, Erhard Rahm:
  Research and applications: A multi-part matching strategy for mapping LOINC with laboratory terminologies. 792-800
• 
  Swapna Abhyankar, Dina Demner-Fushman, Fiona M. Callaghan, Clement J. McDonald:
  Research and applications: Combining structured and unstructured data to identify a cohort of ICU patients who received dialysis. 801-807
• 
  Jianbo Lei, Buzhou Tang, Xueqin Lu, Kaihua Gao, Min Jiang, Hua Xu:
  Research and applications: A comprehensive study of named entity recognition in Chinese clinical text. 808-814
• 
  Ye Ye, Fuchiang (Rich) Tsui, Michael M. Wagner, Jeremy U. Espino, Qi Li:
  Research and applications: Influenza detection from emergency department reports using natural language processing and Bayesian network classifiers. 815-823
• 
  Yuan Luo, Aliyah R. Sohani, Ephraim P. Hochberg, Peter Szolovits:
  Research and applications: Automatic lymphoma classification with sentence subgraph mining from pathology reports. 824-832
• 
  Glenn T. Gobbel, Jennifer H. Garvin, Ruth M. Reeves, Robert M. Cronin, Julia Heavirland, Jenifer Williams, Allison Weaver, Shrimalini Jayaramaraja, Dario A. Giuse, Theodore Speroff, Steven H. Brown, Hua Xu, Michael E. Matheny:
  Research and applications: Assisted annotation of medical free text using RapTAT. 833-841
• 
  Rachel Chasin, Anna Rumshisky, Özlem Uzuner, Peter Szolovits:
  Research and applications: Word sense disambiguation in the clinical domain: a comparison of knowledge-rich and knowledge-poor unsupervised methods. 842-849
• 
  Duy Duc An Bui, Qing Zeng-Treitler:
  Research and applications: Learning regular expressions for clinical text classification. 850-857
• 
  Sunghwan Sohn, Cheryl Clark, Scott R. Halgrim, Sean P. Murphy, Christopher G. Chute, Hongfang Liu:
  Research and applications: MedXN: an open source medication extraction and normalization tool for clinical text. 858-865
• 
  Brian Connolly, Pawel Matykiewicz, K. Bretonnel Cohen, Shannon M. Standridge, Tracy A. Glauser, Dennis J. Dlugos, Susan Koh, Eric Tham, John Pestian:
  Research and applications: Assessing the similarity of surface linguistic features related to epilepsy across pediatric hospitals. 866-870
• 
  Ben J. Marafino, Jason M. Davies, Naomi S. Bardach, Mitzi L. Dean, R. Adams Dudley:
  Research and applications: N-gram support vector machines for scalable procedure and diagnosis classification, with applications to clinical free text data from the intensive care unit. 871-875
• 
  Stephen T. Wu, Young J. Juhn, Sunghwan Sohn, Hongfang Liu:
  Research and applications: Patient-level temporal aggregation for text-based asthma status ascertainment. 876-884
• 
  Walter S. Campbell, James R. Campbell, William W. West, James C. McClay, Steven H. Hinrichs:
  Research and applications: Semantic analysis of SNOMED CT for a post-coordinated database of histopathology findings. 885-892
• 
  Dung H. M. Nguyen, Jon D. Patrick:
  Research and applications: Supervised machine learning and active learning in classification of radiology reports. 893-901
• 
  Sonal Gupta, Diana L. MacLean, Jeffrey Heer, Christopher D. Manning:
  Research and applications: Induced lexico-syntactic patterns improve information extraction from online medical forums. 902-909

Research and applications

• 
  Harry B. Burke, Albert Hoang, Dorothy Becher, Paul A. Fontelo, Fang Liu, Mark Stephens, Louis N. Pangaro, Laura L. Sessums, Patrick O'Malley, Nancy S. Baxi, Christopher W. Bunt, Vincent F. Capaldi, Julie M. Chen, Barbara A. Cooper, David A. Djuric, Joshua A. Hodge, Shawn Kane, Charles Magee, Zizette R. Makary, Renee M. Mallory, Thomas Miller, Adam Saperstein, Jessica Servey, Ronald W. Gimbel:
  QNOTE: an instrument for measuring the quality of EHR clinical notes. 910-916
• 
  Alexandre Savaris, Theo Härder, Aldo von Wangenheim:
  DCMDSM: a DICOM decomposed storage model. 917-924
• 
  David A. Hanauer, Mohammed Saeed, Kai Zheng, Qiaozhu Mei, Kerby Shedden, Alan R. Aronson, Naren Ramakrishnan:
  Applying MetaMap to Medline for identifying novel associations in a large clinical dataset: a feasibility analysis. 925-937

Brief communication

• 
  Fei Huang, ShiMing Cheng, Xin Du, Wei Chen, Fabio Scano, Dennis Falzon, Lixia Wang:
  Electronic recording and reporting system for tuberculosis in China: experience and opportunities. 938-941

Review

• 
  Jeroen S. de Bruin, Walter Seeling, Christian J. Schuh:
  Data use and effectiveness in electronic surveillance of healthcare associated infections in the 21st century: a systematic review. 942-951

Messages from AMIA

• 
  Bonnie L. Westra:
  2014 AMIA Annual Symposium. 952

Volume 21, Number 6, November 2014

Highlights

• 
  Lucila Ohno-Machado:
  Focusing on the patient: mHealth, social media, electronic health records, and decision support systems. 953

Editorial

• 
  Lucila Ohno-Machado:
  Disseminating informatics knowledge and training the next generation of leaders. 954-956

Perspectives

• 
  Ronald Margolis, Leslie Derr, Michelle Dunn, Michael F. Huerta, Jennie Larkin, Jerry Sheehan, Mark Guyer, Eric D. Green:
  The National Institutes of Health's Big Data to Knowledge (BD2K) initiative: capitalizing on biomedical big data. 957-958
• 
  Ryan J. Shaw, Dori M. Steinberg, Leah L. Zullig, Hayden B. Bosworth, Constance M. Johnson, Linda L. Davis:
  mHealth interventions for weight loss: a guide for achieving treatment fidelity. 959-963
• 
  Adam Wright, Dean F. Sittig, Julie J. McGowan, Joan S. Ash, Lawrence L. Weed:
  Bringing science to medicine: an interview with Larry Weed, inventor of the problem-oriented medical record. 964-968

Research and applications

• 
  Allison P. Heath, Matthew Greenway, Ray Powell, Jonathan Spring, Rafael D. Suarez, David Hanley, Chai Bandlamudi, Megan E. McNerney, Kevin P. White, Robert L. Grossman:
  Bionimbus: a cloud for managing, analyzing and sharing large genomics datasets. 969-975
• 
  Cleo A. Samuel:
  Area-level factors associated with electronic health record adoption and meaningful use in the Regional Extension Center Program. 976-983
• 
  Julia Adler-Milstein, Jordan Everson, Shoou-Yih D. Lee:
  Sequencing of EHR adoption among US hospitals and the impact of meaningful use. 984-991
• 
  David A. Hanauer, Rebecca Preib, Kai Zheng, Sung Won Choi:
  Patient-initiated electronic health record amendment requests. 992-1000
• 
  Jessica S. Ancker, Lisa M. Kern, Alison Edwards, Sarah Nosal, Daniel M. Stein, Diane Hauser, Rainu Kaushal, et al.:
  How is the electronic health record being used? Use of EHR data to assess physician-level variability in technology use. 1001-1008
• 
  Tom Oluoch, Abraham Katana, Victor Ssempijja, Daniel Kwaro, Patrick Langat, Davies Kimanga, Nicky Okeyo, Ameen Abu-Hanna, Nicolette de Keizer:
  Electronic medical record systems are associated with appropriate placement of HIV patients on antiretroviral therapy in rural health facilities in Kenya: a retrospective pre-post study. 1009-1014
• 
  Vincent Gardeux, Ikbel Achour, Jianrong Li, Mark Maienschein-Cline, Haiquan Li, Lorenzo L. Pesce, Gurunadh Parinandi, Neil Bahroos, Robert Winn, Ian T. Foster, Joe G. N. Garcia, Yves A. Lussier:
  'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. 1015-1025
• 
  Qing Zeng-Treitler, Seneca I. Perri, Carlos Nakamura, Jinqiu Kuang, Brent Hill, Duy Duc An Bui, Gregory J. Stoddard, Bruce E. Bray:
  Evaluation of a pictograph enhancement system for patient instruction: a recall study. 1026-1031
• 
  Sherry Pagoto, Kristin L. Schneider, Martinus Evans, Molly E. Waring, Brad Appelhans, Andrew M. Busch, Matthew C. Whited, Herpreet Thind, Michelle Ziedonis:
  Tweeting it off: characteristics of adults who tweet about a weight loss attempt. 1032-1037
• 
  Rimma Pivovarov, David J. Albers, George Hripcsak, Jorge L. Sepulveda, Noémie Elhadad:
  Temporal trends of hemoglobin A1c testing. 1038-1044
• 
  Abhay Nath Mishra, Patricia Ketsche, James Marton, Angela Snyder, Susan McLaren:
  Examining the potential of information technology to improve public insurance application processes: enrollee assessments from a concurrent mixed method analysis. 1045-1052
• 
  Derek W. Meeks, Michael W. Smith, Lesley Taylor, Dean F. Sittig, Jean M. Scott, Hardeep Singh:
  An analysis of electronic health record-related patient safety concerns. 1053-1059
• 
  John D. D'Amore, Joshua C. Mandel, David A. Kreda, Ashley Swain, George A. Koromia, Sumesh Sundareswaran, Liora Alschuler, Robert H. Dolin, Kenneth D. Mandl, Isaac S. Kohane, Rachel B. Ramoni:
  Are Meaningful Use Stage 2 certified EHRs ready for interoperability? Findings from the SMART C-CDA Collaborative. 1060-1068
• 
  Sandy Huang, Paea LePendu, Srinivasan V Iyer, Ming Tai-Seale, David Carrell, Nigam H. Shah:
  Toward personalizing treatment for depression: predicting diagnosis and severity. 1069-1075
• 
  Thomas A. Oniki, Joseph F. Coyle, Craig G. Parker, Stanley M. Huff:
  Lessons learned in detailed clinical modeling at Intermountain Healthcare. 1076-1081
• 
  Patricia C. Dykes, Lipika Samal, Moreen Donahue, Jeffrey O. Greenberg, Ann C. Hurley, Omar Hasan, Terrance A. O'Malley, Arjun K. Venkatesh, Lynn A. Volk, David W. Bates:
  A patient-centered longitudinal care plan: vision versus reality. 1082-1090
• 
  J. Mac McCullough, Frederick J. Zimmerman, Hector P. Rodriguez:
  Impact of clinical decision support on receipt of antibiotic prescriptions for acute bronchitis and upper respiratory tract infection. 1091-1097

Brief communication

• 
  Byron C. Wallace, Michael J. Paul, Urmimala Sarkar, Thomas A. Trikalinos, Mark Dredze:
  A large-scale quantitative analysis of latent factors and sentiment in online doctor reviews. 1098-1103
• 
  Andrew Georgiou, Sharyn Lymer, Megan Forster, Michael Strachan, Sara Graham, Geof Hirst, Joanne L. Callen, Johanna I. Westbrook:
  Lessons learned from the introduction of an electronic safety net to enhance test result management in an Australian mothers' hospital. 1104-1108
• 
  Jonathan Michael Pell, Dora Cheung, Michael A. Jones, Ethan Cumbler:
  Don't fuel the fire: decreasing intravenous haloperidol use in high risk patients via a customized electronic alert. 1109-1112
• 
  Neeraj Bhandari, Yunfeng Shi, Kyoungrae Jung:
  Seeking health information online: does limited healthcare access matter? 1113-1117

Review

• 
  Laure Perrier, Ann Farrell, Ana Patricia Ayala, David Lightfoot, Tim Kenny, Ellen Aaronson, Nancy Allee, Tara Brigham, Elizabeth Connor, Teodora Constantinescu, Joanne Muellenbach, Helen-Ann Brown Epstein, Ardis Weiss:
  Effects of librarian-provided services in healthcare settings: a systematic review. 1118-1124

Case reports

• 
  Rajat Kumar Agarwal, Amit Sedai, Sunil Dhimal, Kumari Ankita, Luigi Clemente, Sulman Siddique, Naila Yaqub, Sadaf Khalid, Itrat Fatima, Anwar Khan, Sarah Khan Gilani, Priya Marwah, Rajpreet Soni, Mohamed El Missiry, Mohamed Hamed Hussain, Cornelio Uderzo, Lawrence Faulkner:
  A prospective international cooperative information technology platform built using open-source tools for improving the access to and safety of bone marrow transplantation in low- and middle-income countries. 1125-1128
• 
  Kari L. Walker, Olga Kirillova, Suzanne E. Gillespie, David Hsiao, Valentyna Pishchalenko, Akshatha Kalsanka Pai, Jon Puro, Robert Plumley, Rustam Kudyakov, Weiming Hu, Art Allisany, MaryAnn McBurnie, Stephen E. Kurtz, Brian Hazlehurst:
  Using the CER Hub to ensure data quality in a multi-institution smoking cessation study. 1129-1135
• 
  Muhammad F. Walji, Elsbeth Kalenderian, Paul C. Stark, Joel M. White, Krishna Kookal Kumar, Dat Phan, Duong Tran, Elmer V. Bernstam, Rachel B. Ramoni:
  BigMouth: a multi-institutional dental data repository. 1136-1140

Messages from AMIA

• 
  Blackford Middleton:
  Chairman's column: health informatics and healthcare transformation - entering the post-EMR era. 1141-1142