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Charles M. Perou
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2020 – today
- 2021
- [j9]Meichen Dong, Aatish Thennavan, Eugene Urrutia, Yun Li, Charles M. Perou, Fei Zou, Yuchao Jiang:
SCDC: bulk gene expression deconvolution by multiple single-cell RNA sequencing references. Briefings Bioinform. 22(1): 416-427 (2021) - 2020
- [j8]Arran K. Turnbull, Cigdem Selli, Carlos Martinez-Perez, Anu Fernando, Lorna Renshaw, Jane Keys, Jonine Figueroa, Xiaping He, Maki Tanioka, Alison F. Munro, Lee Murphy, Angie Fawkes, Richard Clark, Audrey Coutts, Charles M. Perou, Lisa A. Carey, Michael J. Dixon, Andrew H. Sims:
Unlocking the transcriptomic potential of formalin-fixed paraffin embedded clinical tissues: comparison of gene expression profiling approaches. BMC Bioinform. 21(1): 30 (2020)
2010 – 2019
- 2019
- [j7]Lisle E. Mose, Charles M. Perou, Joel S. Parker:
Improved indel detection in DNA and RNA via realignment with ABRA2. Bioinform. 35(17): 2966-2973 (2019) - [i3]Heather D. Couture, Roland Kwitt, J. S. Marron, Melissa A. Troester, Charles M. Perou, Marc Niethammer:
Deep Multi-View Learning via Task-Optimal CCA. CoRR abs/1907.07739 (2019) - 2018
- [c3]Heather D. Couture, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer:
Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. MICCAI (2) 2018: 254-262 - [i2]Heather D. Couture, J. S. Marron, Charles M. Perou, Melissa A. Troester, Marc Niethammer:
Multiple Instance Learning for Heterogeneous Images: Training a CNN for Histopathology. CoRR abs/1806.05083 (2018) - [i1]Daniel J. Luckett, Eric B. Laber, Samer S. El-Kamary, Cheng Fan, Ravi Jhaveri, Charles M. Perou, Fatma M. Shebl, Michael R. Kosorok:
Receiver Operating Characteristic Curves and Confidence Bands for Support Vector Machines. CoRR abs/1807.06711 (2018) - 2016
- [j6]Lisle E. Mose, Sara R. Selitsky, Lisa M. Bixby, David L. Marron, Michael D. Iglesia, Jonathan S. Serody, Charles M. Perou, Benjamin Vincent, Joel S. Parker:
Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer. Bioinform. 32(24): 3729-3734 (2016) - 2015
- [c2]Heather D. Couture, J. S. Marron, Nancy E. Thomas, Charles M. Perou, Marc Niethammer:
Hierarchical task-driven feature learning for tumor histology. ISBI 2015: 999-1003 - 2014
- [j5]Lisle E. Mose, Matthew D. Wilkerson, D. Neil Hayes, Charles M. Perou, Joel S. Parker:
ABRA: improved coding indel detection via assembly-based realignment. Bioinform. 30(19): 2813-2815 (2014) - [c1]Nikhil Singh, Heather D. Couture, J. S. Marron, Charles M. Perou, Marc Niethammer:
Topological Descriptors of Histology Images. MLMI 2014: 231-239 - 2012
- [j4]Christopher R. Cabanski, Keary Cavin, Chris Bizon, Matthew D. Wilkerson, Joel S. Parker, Kirk C. Wilhelmsen, Charles M. Perou, J. S. Marron, D. Neil Hayes:
ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data. BMC Bioinform. 13: 221 (2012)
2000 – 2009
- 2008
- [j3]Andrey A. Shabalin, Håkon Tjelmeland, Cheng Fan, Charles M. Perou, Andrew B. Nobel:
Merging two gene-expression studies via cross-platform normalization. Bioinform. 24(9): 1154-1160 (2008) - 2007
- [j2]Mark F. Burkart, Jonathan D. Wren, Jason I. Herschkowitz, Charles M. Perou, Harold R. Garner:
Clustering microarray-derived gene lists through implicit literature relationships. Bioinform. 23(15): 1995-2003 (2007) - 2004
- [j1]Mónica Benito, Joel S. Parker, Quan Du, Junyuan Wu, Dong Xiang, Charles M. Perou, James Stephen Marron:
Adjustment of systematic microarray data biases. Bioinform. 20(1): 105-114 (2004)
Coauthor Index
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