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Rainer Merkl
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2020 – today
- 2021
- [j18]Samuel Schmitz
, Moritz Ertelt, Rainer Merkl
Rosetta design with co-evolutionary information retains protein function. PLoS Comput. Biol. 17(1) (2021) - 2020
- [j17]Robert Esch, Rainer Merkl
Conserved genomic neighborhood is a strong but no perfect indicator for a direct interaction of microbial gene products. BMC Bioinform. 21(1): 5 (2020)
2010 – 2019
- 2017
- [j16]Florian Kandlinger, Maximilian G. Plach, Rainer Merkl
AGeNNT: annotation of enzyme families by means of refined neighborhood networks. BMC Bioinform. 18(1): 274:1-274:13 (2017) - [j15]Patrick Löffler, Samuel Schmitz
Rosetta: MSF: a modular framework for multi-state computational protein design. PLoS Comput. Biol. 13(6) (2017) - 2015
- [j14]Clemens Zvácek, Gerald Friedrichs, Leonhard Heizinger
An assessment of catalytic residue 3D ensembles for the prediction of enzyme function. BMC Bioinform. 16: 359:1-359:8 (2015) - 2014
- [j13]Jan-Oliver Janda, Ajmal Popal, Jochen Bauer, Markus Busch
H2rs: Deducing evolutionary and functionally important residue positions by means of an entropy and similarity based analysis of multiple sequence alignments. BMC Bioinform. 15: 118 (2014) - 2013
- [j12]Jan-Oliver Janda, Andreas Meier, Rainer Merkl
CLIPS-4D: a classifier that distinguishes structurally and functionally important residue-positions based on sequence and 3D data. Bioinform. 29(23): 3029-3035 (2013) - 2012
- [j11]Jan-Oliver Janda, Markus Busch
CLIPS-1D: analysis of multiple sequence alignments to deduce for residue-positions a role in catalysis, ligand-binding, or protein structure. BMC Bioinform. 13: 55 (2012) - 2011
- [j10]Florian Fink, Jochen Hochrein, Vincent Wolowski, Rainer Merkl
PROCOS: Computational analysis of protein-protein complexes. J. Comput. Chem. 32(12): 2575-2586 (2011) - [j9]Andreas Pürzer, Felix Grassmann
Key2Ann: a tool to process sequence sets by replacing database identifiers with a human-readable annotation. J. Integr. Bioinform. 8(1) (2011)
2000 – 2009
- 2009
- [j8]André Fischer, Nils Enkler, Gerd Neudert, Marco Bocola, Reinhard Sterner
TransCent: Computational enzyme design by transferring active sites and considering constraints relevant for catalysis. BMC Bioinform. 10 (2009) - 2008
- [j7]Rainer Merkl
H2r: Identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments. BMC Bioinform. 9 (2008) - 2006
- [j6]Stephan Waack, Oliver Keller, Roman Asper, Thomas Brodag, Carsten Damm
Score-based prediction of genomic islands in prokaryotic genomes using hidden Markov models. BMC Bioinform. 7: 142 (2006) - [j5]Rainer Merkl:
AMIGOS: A Method for the Inspection of Genomic Organisation or Structure and its Application to Characterise Conserved Gene Arrangements. Silico Biol. 6(4): 281-306 (2006) - 2004
- [j4]Rainer Merkl
SIGI: score-based identification of genomic islands. BMC Bioinform. 5: 22 (2004) - [j3]Peter Meinicke, Maike Tech, Burkhard Morgenstern
Oligo kernels for datamining on biological sequences: a case study on prokaryotic translation initiation sites. BMC Bioinform. 5: 169 (2004) - 2003
- [b1]Rainer Merkl, Stephan Waack:
Bioinformatik interaktiv - Algorithmen und Praxis. Wiley-VCH 2003, ISBN 978-3-527-30662-6, pp. I-XIV, 1-347 - [j2]Arnim Wiezer, Rainer Merkl:
secureBLAST. Silico Biol. 3(4): 405-409 (2003) - [j1]Maike Tech, Rainer Merkl:
YACOP: Enhanced gene prediction obtained by a combination of existing methods. Silico Biol. 3(4): 441-451 (2003)
Coauthor Index
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