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Terrence S. Furey
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2020 – today
- 2023
- [j12]Nolan H. Hamilton, Terrence S. Furey:
ROCCO: a robust method for detection of open chromatin via convex optimization. Bioinform. 39(12) (2023)
2010 – 2019
- 2017
- [j11]Bryan Quach, Terrence S. Furey:
DeFCoM: analysis and modeling of transcription factor binding sites using a motif-centric genomic footprinter. Bioinform. 33(7): 956-963 (2017) - [j10]Jeremy R. Wang, Bryan Quach, Terrence S. Furey:
Correcting nucleotide-specific biases in high-throughput sequencing data. BMC Bioinform. 18(1): 357 (2017) - 2016
- [j9]Zheng Xu, Guosheng Zhang, Fulai Jin, Mengjie Chen, Terrence S. Furey, Patrick F. Sullivan, Zhaohui S. Qin, Ming Hu, Yun Li:
A hidden Markov random field-based Bayesian method for the detection of long-range chromosomal interactions in Hi-C data. Bioinform. 32(5): 650-656 (2016) - 2010
- [j8]Mats Ensterö, Örjan Åkerborg, Daniel Lundin, Bei Wang, Terrence S. Furey, Marie Öhman, Jens Lagergren:
A computational screen for site selective A-to-I editing detects novel sites in neuron specific Hu proteins. BMC Bioinform. 11: 6 (2010)
2000 – 2009
- 2008
- [j7]Alan P. Boyle, Justin Guinney, Gregory E. Crawford, Terrence S. Furey:
F-Seq: a feature density estimator for high-throughput sequence tags. Bioinform. 24(21): 2537-2538 (2008) - 2007
- [j6]Liang Goh, Susan K. Murphy, Sayan Mukherjee, Terrence S. Furey:
Genomic sweeping for hypermethylated genes. Bioinform. 23(3): 281-288 (2007) - 2006
- [j5]Angela S. Hinrichs, Donna Karolchik, Robert Baertsch, Galt P. Barber, Gill Bejerano, Hiram Clawson, Mark Diekhans, Terrence S. Furey, Rachel A. Harte, Fan Hsu, Jennifer Hillman-Jackson, Robert M. Kuhn, Jakob Skou Pedersen, Andy Pohl, Brian J. Raney, Kate R. Rosenbloom, Adam C. Siepel, Kayla E. Smith, Charles W. Sugnet, A. Sultan-Qurraie, Daryl J. Thomas, Heather Trumbower, Ryan J. Weber, M. Weirauch, Ann S. Zweig, David Haussler, W. James Kent:
The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 34(Database-Issue): 590-598 (2006) - [j4]Zhong Wang, Huntington F. Willard, Sayan Mukherjee, Terrence S. Furey:
Evidence of Influence of Genomic DNA Sequence on Human X Chromosome Inactivation. PLoS Comput. Biol. 2(9) (2006) - 2004
- [j3]Donna Karolchik, Angela S. Hinrichs, Terrence S. Furey, Krishna M. Roskin, Charles W. Sugnet, David Haussler, W. James Kent:
The UCSC Table Browser data retrieval tool. Nucleic Acids Res. 32(Database-Issue): 493-496 (2004) - 2003
- [j2]Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Yontao Lu, Krishna M. Roskin, Matt Schwartz, Charles W. Sugnet, Daryl J. Thomas, Ryan J. Weber, David Haussler, W. James Kent:
The UCSC Genome Browser Database. Nucleic Acids Res. 31(1): 51-54 (2003) - 2001
- [c1]Paul Pavlidis, Terrence S. Furey, M. Liberto, David Haussler, William Noble Grundy:
Promoter Region-Based Classification of Genes. Pacific Symposium on Biocomputing 2001: 151-164 - 2000
- [j1]Terrence S. Furey, Nello Cristianini, Nigel Duffy, David W. Bednarski, Michèl Schummer, David Haussler:
Support vector machine classification and validation of cancer tissue samples using microarray expression data. Bioinform. 16(10): 906-914 (2000)
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