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Peter L. Freddolino
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2020 – today
- 2023
- [j7]Mariano Spivak
, John E. Stone
VMD as a Platform for Interactive Small Molecule Preparation and Visualization in Quantum and Classical Simulations. J. Chem. Inf. Model. 63(15): 4664-4678 (2023) - 2022
- [j6]Yi-Heng Zhu
TripletGO: Integrating Transcript Expression Profiles with Protein Homology Inferences for Gene Function Prediction. Genom. Proteom. Bioinform. 20(5): 1013-1027 (2022) - [j5]Wei Zheng
LOMETS3: integrating deep learning and profile alignment for advanced protein template recognition and function annotation. Nucleic Acids Res. 50(W1): 454-464 (2022) - 2020
- [j4]Xiaoqiong Wei
Detecting Gene Ontology misannotations using taxon-specific rate ratio comparisons. Bioinform. 36(16): 4383-4388 (2020)
2010 – 2019
- 2017
- [j3]Chengxin Zhang, Peter L. Freddolino, Yang Zhang
COFACTOR: improved protein function prediction by combining structure, sequence and protein-protein interaction information. Nucleic Acids Res. 45(Webserver-Issue): W291-W299 (2017) - 2011
- [j2]Eduard Schreiner, Leonardo G. Trabuco, Peter L. Freddolino, Klaus Schulten:
Stereochemical errors and their implications to molecular dynamics simulations. BMC Bioinform. 12: 190 (2011)
2000 – 2009
- 2007
- [j1]John E. Stone
Accelerating molecular modeling applications with graphics processors. J. Comput. Chem. 28(16): 2618-2640 (2007)
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