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Myles Brown

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2020 – today

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2023
[j13]
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  - journals/bioinformatics/LYiKDTCBMG23
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  - https://dblp.org/rec/journals/bioinformatics/LYiKDTCBMG23
Sehi L'Yi, Mark S. Keller, Ariaki Dandawate, Len Taing, Chen-Hao Chen, Myles Brown, Clifford A. Meyer, Nils Gehlenborg:
Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data. Bioinform. 39(2) (2023)
2022
[j12]
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  - journals/nar/ZengWYOLZGZLWFZ22
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Zexian Zeng, Cheryl J. Wong, Lin Yang, Nofal Ouardaoui, Dian Li, Wubing Zhang, Shengqing Gu, Yi Zhang, Yang Liu, Xiaoqing Wang, Jingxin Fu, Liye Zhou, Boning Zhang, Sarah Kim, Kathleen B. Yates, Myles Brown, Gordon J. Freeman, Ravindra Uppaluri, Robert Manguso, X. Shirley Liu:
TISMO: syngeneic mouse tumor database to model tumor immunity and immunotherapy response. Nucleic Acids Res. 50(D1): 1391-1397 (2022)
2021
[j11]
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Xintao Qiu, Avery S. Feit, Ariel Feiglin, Yingtian Xie, Nikolas Kesten, Len Taing, Joseph Perkins, Shengqing Gu, Yihao Li, Paloma Cejas, Ningxuan Zhou, Rinath Jeselsohn, Myles Brown, X. Shirley Liu, Henry W. Long:
CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis. Genom. Proteom. Bioinform. 19(4): 652-661 (2021)
2020
[j10]
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Ziyi Li, Binbin Wang, Shengqing Gu, Peng Jiang, Avinash Das Sahu, Chen-Hao Chen, Tong Han, Sailing Shi, Xiaoqing Wang, Nicole Traugh, Hailing Liu, Yin Liu, Qiu Wu, Myles Brown, Tengfei Xiao, Genevieve M. Boland, Xiaole Shirley Liu:
CRISPR Screens Identify Essential Cell Growth Mediators in BRAF Inhibitor-resistant Melanoma. Genom. Proteom. Bioinform. 18(1): 26-40 (2020)

2010 – 2019

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2019
[j9]
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  - journals/bioinformatics/KosterBL19
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Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(6): 995-1001 (2019)
[j8]
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  - journals/bioinformatics/KosterBL19a
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Johannes Köster, Myles Brown, Xiaole Shirley Liu:
A Bayesian model for single cell transcript expression analysis on MERFISH data. Bioinform. 35(13): 2347 (2019)
[j7]
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  - journals/nar/ZhengWMQWSCBZML19
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Rongbin Zheng, Changxin Wan, Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Chen-Hao Chen, Myles Brown, Xiaoyan Zhang, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis. Nucleic Acids Res. 47(Database-Issue): D729-D735 (2019)
2018
[j6]
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  - journals/bioinformatics/ChenXXJMLBL18
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Chen-Hao Chen, Tengfei Xiao, Han Xu, Peng Jiang, Clifford A. Meyer, Wei Li, Myles Brown, Xiaole Shirley Liu:
Improved design and analysis of CRISPR knockout screens. Bioinform. 34(23): 4095-4101 (2018)
[j5]
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  - journals/bmcbi/CornwellVTHKLSL18
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MacIntosh Cornwell, Mahesh Vangala, Len Taing, Zachary Herbert, Johannes Köster, Bo Li, Hanfei Sun, Taiwen Li, Jian Zhang, Xintao Qiu, Matthew Pun, Rinath Jeselsohn, Myles Brown, Xiaole Shirley Liu, Henry W. Long:
VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. BMC Bioinform. 19(1): 135:1-135:14 (2018)
2017
[j4]
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  - journals/nar/MeiQWSZZZWSTLBM17
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Shenglin Mei, Qian Qin, Qiu Wu, Hanfei Sun, Rongbin Zheng, Chongzhi Zang, Muyuan Zhu, Jiaxin Wu, Xiaohui Shi, Len Taing, Tao Liu, Myles Brown, Clifford A. Meyer, Xiaole Shirley Liu:
Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse. Nucleic Acids Res. 45(Database-Issue): D658-D662 (2017)
2016
[j3]
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  - journals/bmcbi/QinMWSLTCLLZXCM16
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Qian Qin, Shenglin Mei, Qiu Wu, Hanfei Sun, Lewyn Li, Len Taing, Sujun Chen, Fugen Li, Tao Liu, Chongzhi Zang, Han Xu, Yiwen Chen, Clifford A. Meyer, Yong Zhang, Myles Brown, Henry Long:
ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline. BMC Bioinform. 17: 404 (2016)
2013
[j2]
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  - journals/bioinformatics/SunQLWLWLYTRBZLL13
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Hanfei Sun, Bo Qin, Tao Liu, Qixuan Wang, Jing Liu, Juan Wang, Xueqiu Lin, Yulin Yang, Len Taing, Prakash K. Rao, Myles Brown, Yong Zhang, Henry Long, Xiaole Shirley Liu:
CistromeFinder for ChIP-seq and DNase-seq data reuse. Bioinform. 29(10): 1352-1354 (2013)
2011
[j1]
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  - journals/bioinformatics/MeyerHBL11
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Clifford A. Meyer, Housheng H. He, Myles Brown, Xiaole Shirley Liu:
BINOCh: binding inference from nucleosome occupancy changes. Bioinform. 27(13): 1867-1868 (2011)

2000 – 2009

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2007
[c1]
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  - conf/biocomp/LiCBL07
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Wei Li, Jason S. Carroll, Myles Brown, Xiaole Shirley Liu:
xMAN: extreme MApping of oligoNucleotides. BIOCOMP 2007: 631-637

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