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Charles DeLisi
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2020 – today
- 2021
- [b1]Charles DeLisi:
The Mysterious Commonplace - A Life in Science. WorldScientific 2021, ISBN 9789811238451, pp. 1-220
2010 – 2019
- 2016
- [j26]Brian Granger, Yi-Chien Chang
, Yan Wang, Charles DeLisi, Daniel Segrè
Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0. PLoS Comput. Biol. 12(4) (2016) - 2013
- [j25]Zhenjun Hu, Yi-Chien Chang
VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res. 41(Webserver-Issue): 225-231 (2013) - 2012
- [j24]Jui-Hung Hung
Gene set enrichment analysis: performance evaluation and usage guidelines. Briefings Bioinform. 13(3): 281-291 (2012) - [j23]Chia-Ling Huang, John Lamb, Leonid Chindelevitch
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge. BMC Bioinform. 13: 46 (2012) - [j22]Brian D. Athey
The NIH National Center for Integrative Biomedical Informatics (NCIBI). J. Am. Medical Informatics Assoc. 19(2): 166-170 (2012) - [j21]Daichi Shigemizu, Zhenjun Hu, Jui-Hung Hung
Using Functional Signatures to Identify Repositioned Drugs for Breast, Myelogenous Leukemia and Prostate Cancer. PLoS Comput. Biol. 8(2) (2012) - 2011
- [j20]Richard J. Roberts
COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Res. 39(Database-Issue): 11-14 (2011) - 2010
- [c7]Yue Fan, Mark A. Kon, Shinuk Kim, Charles DeLisi:
Smoothing Gene Expression Using Biological Networks. ICMLA 2010: 540-545
2000 – 2009
- 2009
- [j19]Zhenjun Hu, Jui-Hung Hung
VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic Acids Res. 37(Web-Server-Issue): 115-121 (2009) - 2008
- [j18]Zhenjun Hu, Evan S. Snitkin
VisANT: an integrative framework for networks in systems biology. Briefings Bioinform. 9(4): 317-325 (2008) - [j17]Bolan Linghu, Evan S. Snitkin
High-precision high-coverage functional inference from integrated data sources. BMC Bioinform. 9 (2008) - [c6]Yue Fan, Mark A. Kon, Charles DeLisi:
Ensemble Machine Methods for DNA Binding. ICMLA 2008: 709-716 - 2007
- [j16]Gul S. Dalgin, Gabriela Alexe, Daniel Scanfeld, Pablo Tamayo, Jill P. Mesirov, Shridar Ganesan, Charles DeLisi, Gyan Bhanot:
Portraits of breast cancer progression. BMC Bioinform. 8 (2007) - [j15]Zhenjun Hu, David M. Ng, Takuji Yamada, Chunnuan Chen, Shuichi Kawashima
VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Res. 35(Web-Server-Issue): 625-632 (2007) - [j14]Timothy E. Reddy
Binding Site Graphs: A New Graph Theoretical Framework for Prediction of Transcription Factor Binding Sites. PLoS Comput. Biol. 3(5) (2007) - [c5]Mark A. Kon, Yue Fan, Dustin T. Holloway, Charles DeLisi:
SVMotif: A Machine Learning Motif Algorithm. ICMLA 2007: 573-580 - [c4]Mark A. Kon, Dustin T. Holloway, Yue Fan, Chaitanya Sai, Charles DeLisi:
Learning Methods for DNA Binding in Computational Biology. IJCNN 2007: 2358-2365 - 2006
- [j13]Jie Wu, Zhenjun Hu, Charles DeLisi:
Gene annotation and network inference by phylogenetic profiling. BMC Bioinform. 7: 80 (2006) - [j12]Evan S. Snitkin
Comparative assessment of performance and genome dependence among phylogenetic profiling methods. BMC Bioinform. 7: 420 (2006) - [j11]Dustin T. Holloway, Mark A. Kon, Charles DeLisi:
Machine learning methods for transcription data integration. IBM J. Res. Dev. 50(6): 631-644 (2006) - [c3]Joe Mellor, Charles DeLisi:
An equilibrium partitioning model connecting gene expression and cis-motif content. ISMB (Supplement of Bioinformatics) 2006: 368-374 - 2005
- [j10]Zhenjun Hu, Joe Mellor, Jie Wu, Takuji Yamada, Dustin T. Holloway, Charles DeLisi:
VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Res. 33(Web-Server-Issue): 352-357 (2005) - [c2]Charles DeLisi:
Discovery and Annotation of Genetic Modules. RECOMB 2005: 188-188 - 2004
- [j9]Zhenjun Hu, Joseph C. Mellor, Jie Wu, Charles DeLisi:
VisANT: an online visualization and analysis tool for biological interaction data. BMC Bioinform. 5: 17 (2004) - 2003
- [j8]Jie Wu, Simon Kasif, Charles DeLisi:
Identification of functional links between genes using phylogenetic profiles. Bioinform. 19(12): 1524-1530 (2003) - [j7]Boris E. Shakhnovich, John M. Harvey, Steve Comeau, David Lorenz
ELISA: Structure-Function Inferences based on statistically significant and evolutionarily inspired observations. BMC Bioinform. 4: 34 (2003) - 2002
- [j6]Rhonda Harrison, Charles DeLisi:
Condition specific transcription factor binding site characterization in Saccharomyces cerevisiae. Bioinform. 18(10): 1289-1296 (2002) - [j5]Joseph C. Mellor, Itai Yanai, Karl H. Clodfelter, Julian Mintseris, Charles DeLisi:
Predictome: a database of putative functional links between proteins. Nucleic Acids Res. 30(1): 306-309 (2002) - [c1]Rhonda Harrison, Charles DeLisi:
A hypothesis driven approach to condition specific transcription factor binding site characterization in S.c.. SAC 2002: 151-158
1990 – 1999
- 1999
- [j4]Charles DeLisi, Sandor Vajda:
Computational problems in cell biology. Comput. Sci. Eng. 1(3): 26-32 (1999) - 1996
- [j3]Kamalakar Gulukota, Sandor Vajda, Charles DeLisi:
Peptide docking using dynamic programming. J. Comput. Chem. 17(4): 418-428 (1996) - 1993
- [j2]Qiang Zheng, Rakefet Rosenfeld, Sandor Vajda
Loop closure via bond scaling and relaxation. J. Comput. Chem. 14(5): 556-565 (1993)
1980 – 1989
- 1984
- [j1]Minoru Kanehisa, P. Klein, P. Greif, Charles DeLisi:
Computer analysis and structure prediction of nucleic acids and proteins. Nucleic Acids Res. 12(1): 417-428 (1984)
Coauthor Index
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