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Steven J. Hallam
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- affiliation: University of British Columbia, Vancouver, Canada
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2020 – today
- 2022
- [c8]Abdur Rahman Mohd Abul Basher, Steven J. Hallam:
Aggregating Statistically Correlated Metabolic Pathways Into Groups to Improve Prediction Performance. BIOINFORMATICS 2022: 49-61 - 2021
- [j11]Sarah E. I. Perez, Aria S. Hahn
, Martin Krzywinski, Steven J. Hallam:
Hive Panel Explorer: an interactive network visualization tool. Bioinform. 37(3): 436-437 (2021) - [j10]Abdur Rahman Mohd Abul Basher, Steven J. Hallam:
Leveraging heterogeneous network embedding for metabolic pathway prediction. Bioinform. 37(6): 822-829 (2021) - [j9]Abdur Rahman Mohd Abul Basher
Metabolic Pathway Prediction Using Non-Negative Matrix Factorization with Improved Precision. J. Comput. Biol. 28(11): 1075-1103 (2021) - [j8]Kimberly A. Dill-McFarland, Stephan G. König
An integrated, modular approach to data science education in microbiology. PLoS Comput. Biol. 17(2) (2021) - [c7]Abdur Rahman Mohd Abul Basher
Relabeling Metabolic Pathway Data with Groups to Improve Prediction Outcomes. ICCABS 2021: 38-50 - 2020
- [j7]Connor Morgan-Lang
TreeSAPP: the Tree-based Sensitive and Accurate Phylogenetic Profiler. Bioinform. 36(18): 4706-4713 (2020) - [j6]Abdur Rahman Mohd Abul Basher, Ryan J. McLaughlin
Metabolic pathway inference using multi-label classification with rich pathway features. PLoS Comput. Biol. 16(10) (2020) - [c6]Abdur Rahman Mohd Abul Basher
Metabolic Pathway Prediction using Non-negative Matrix Factorization with Improved Precision. ICCABS 2020: 33-44
2010 – 2019
- 2017
- [j5]David Páez-Espino, I-Min A. Chen, Krishna Palaniappan
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45(Database-Issue): D457-D465 (2017) - 2016
- [j4]Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
LCA*: an entropy-based measure for taxonomic assignment within assembled metagenomes. Bioinform. 32(23): 3535-3542 (2016) - [c5]Dongjae Kim, Aria S. Hahn, Niels W. Hanson, Kishori M. Konwar, Steven J. Hallam:
FAST: Fast annotation with synchronized threads. CIBCB 2016: 1-8 - 2015
- [j3]Kishori M. Konwar, Niels W. Hanson
MetaPathways v2.5: quantitative functional, taxonomic and usability improvements. Bioinform. 31(20): 3345-3347 (2015) - [c4]Aria S. Hahn, Niels W. Hanson
Assembly independent functional annotation of short-read data using SOFA: Short-ORF functional annotation. CIBCB 2015: 1-6 - [c3]Dongjae Kim, Aria S. Hahn, Shang-Ju Wu, Niels W. Hanson
FragGeneScan-plus for scalable high-throughput short-read open reading frame prediction. CIBCB 2015: 1-8 - 2014
- [c2]Niels W. Hanson
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds. CIBCB 2014: 1-7 - 2013
- [j2]Kishori M. Konwar, Niels W. Hanson
MetaPathways: a modular pipeline for constructing pathway/genome databases from environmental sequence information. BMC Bioinform. 14: 202 (2013) - [j1]W. Evan Durno, Niels W. Hanson
Expanding the boundaries of local similarity analysis. BMC Genom. 14(S-1): S3 (2013) - [c1]Inna Rytsareva, Ananth Kalyanaraman, Kishori M. Konwar, Steven J. Hallam:
Scalable heuristics for clustering biological graphs. ICCABS 2013: 1-6
Coauthor Index
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