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Fabien Jourdan
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2020 – today
- 2024
- [j18]Juliette Cooke
, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20(2) (2024) - 2023
- [j17]Louison Fresnais
A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques. BMC Bioinform. 24(1): 234 (2023) - 2021
- [j16]Maxime Delmas
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases. Bioinform. 37(21): 3896-3904 (2021) - [j15]Pablo Rodríguez-Mier
DEXOM: Diversity-based enumeration of optimal context-specific metabolic networks. PLoS Comput. Biol. 17(2) (2021) - [j14]Cecilia Wieder
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLoS Comput. Biol. 17(9) (2021)
2010 – 2019
- 2019
- [j13]Clément Frainay
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results. Bioinform. 35(2): 274-283 (2019) - 2018
- [j12]Maxime Chazalviel
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34(2): 312-313 (2018) - [j11]Ludovic Cottret
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46(Webserver-Issue): W495-W502 (2018) - 2017
- [j10]Clément Frainay
Computational methods to identify metabolic sub-networks based on metabolomic profiles. Briefings Bioinform. 18(1): 43-56 (2017) - [i2]Merlijn N. van Rijswijk
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2015
- [j9]Sanu Shameer, Flora J. Logan-Klumpler, Florence Vinson, Ludovic Cottret
TrypanoCyc: a community-led biochemical pathways database for Trypanosoma brucei. Nucleic Acids Res. 43(Database-Issue): 637-644 (2015) - 2014
- [j8]Paulo Vieira Milreu, Cecilia Coimbra Klein, Ludovic Cottret
Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure. Bioinform. 30(1): 61-70 (2014) - [j7]Ricardo Roberto da Silva
ProbMetab: an R package for Bayesian probabilistic annotation of LC-MS-based metabolomics. Bioinform. 30(9): 1336-1337 (2014) - [i1]Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan, Romain Bourqui:
Communities and Hierarchical Structures in Dynamic Social Networks: Analysis and Visualization. CoRR abs/1409.5040 (2014) - 2012
- [j6]Amine Ghozlane, Frédéric Bringaud, Hayssam Soueidan, Isabelle Dutour, Fabien Jourdan
Flux Analysis of the Trypanosoma brucei Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach. Adv. Bioinformatics 2012: 159423:1-159423:16 (2012) - [j5]Vicente Acuña, Etienne Birmelé, Ludovic Cottret
Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets. Theor. Comput. Sci. 457: 1-9 (2012) - [c15]Jonathan Dubois, Ludovic Cottret
Systrip: A Visual Environment for the Investigation of Time-series Data in the Context of Metabolic Networks. IV 2012: 204-213 - 2011
- [j4]Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Fabien Jourdan
Communities and hierarchical structures in dynamic social networks: analysis and visualization. Soc. Netw. Anal. Min. 1(2): 83-95 (2011) - [c14]Romain Bourqui, Helen C. Purchase, Fabien Jourdan:
Domain specific vs Generic Network Visualization: an Evaluation with Metabolic Networks. AUIC 2011: 9-18 - 2010
- [j3]Ludovic Cottret
MetExplore: a web server to link metabolomic experiments and genome-scale metabolic networks. Nucleic Acids Res. 38(Web-Server-Issue): 132-137 (2010)
2000 – 2009
- 2009
- [c13]Romain Bourqui, Frédéric Gilbert, Paolo Simonetto, Faraz Zaidi, Umang Sharan, Fabien Jourdan:
Detecting Structural Changes and Command Hierarchies in Dynamic Social Networks. ASONAM 2009: 83-88 - [c12]Romain Bourqui
A Stable Decomposition Algorithm for Dynamic Social Network Analysis. EGC (best of volume) 2009: 167-178 - [c11]Romain Bourqui, Paolo Simonetto, Fabien Jourdan:
Un algorithme stable de décomposition pour l'analyse des réseaux sociaux dynamiques. EGC 2009: 337-348 - 2008
- [j2]Fabien Jourdan
MetaNetter: inference and visualization of high-resolution metabolomic networks. Bioinform. 24(1): 143-145 (2008) - [c10]Romain Bourqui, Fabien Jourdan:
Revealing Subnetwork Roles using Contextual Visualization: Comparison of Metabolic Networks. IV 2008: 638-643 - 2007
- [j1]Romain Bourqui
Metabolic network visualization eliminating node redundance and preserving metabolic pathways. BMC Syst. Biol. 1: 29 (2007) - 2006
- [c9]Romain Bourqui, David Auber, Vincent Lacroix, Fabien Jourdan:
Metabolic network visualization using constraint planar graph drawing algorithm. IV 2006: 489-496 - [c8]Fabien Jourdan
Multiscale Scatterplot Matrix for Visual and Interactive Exploration of Metabonomic Data. VIEW 2006: 202-215 - 2005
- [c7]Fabien Jourdan, Guy Melançon, Christophe Douy, Alexandre Gasne:
Une approche MDS hybride pour l'exploration visuelle interactive. IHM 2005: 263-266 - [c6]David Auber, Fabien Jourdan:
Interactive Refinement of Multi-scale Network Clusterings. IV 2005: 703-709 - 2004
- [c5]Yves Chiricota, Fabien Jourdan
Metric-Based Network Exploration and Multiscale Scatterplot. INFOVIS 2004: 135-142 - [c4]Fabien Jourdan
Multiscale hybrid MDS. IV 2004: 388-393 - 2003
- [c3]David Auber, Yves Chiricota, Fabien Jourdan, Guy Melançon:
Multiscale Visualization of Small World Networks. INFOVIS 2003 - [c2]Yves Chiricota, Fabien Jourdan, Guy Melançon:
Software Components Capture Using Graph Clustering. IWPC 2003: 217-226 - [c1]Fabien Jourdan, Guy Melançon:
Tool for metabolic and regulatory pathways visual analysis. Visualization and Data Analysis 2003: 46-55
Coauthor Index
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