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Mariusz Popenda
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2020 – today
- 2022
- [j14]Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok
, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk
RNAspider: a webserver to analyze entanglements in RNA 3D structures. Nucleic Acids Res. 50(W1): 663-669 (2022) - 2020
- [j13]Tomasz Zok
New models and algorithms for RNA pseudoknot order assignment. Int. J. Appl. Math. Comput. Sci. 30(2): 315-324 (2020) - [j12]Mariusz Popenda
Topology-based classification of tetrads and quadruplex structures. Bioinform. 36(4): 1129-1134 (2020) - [j11]Tomasz Zok
ElTetrado: a tool for identification and classification of tetrads and quadruplexes. BMC Bioinform. 21(1): 40 (2020)
2010 – 2019
- 2018
- [j10]Maciej Antczak
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34(8): 1304-1312 (2018) - [j9]Maciej Antczak
RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures. BMC Bioinform. 19(1): 304:1-304:11 (2018) - [j8]Tomasz Zok
RNApdbee 2.0: multifunctional tool for RNA structure annotation. Nucleic Acids Res. 46(Webserver-Issue): W30-W35 (2018) - 2015
- [j7]Agnieszka Rybarczyk
New in silico approach to assessing RNA secondary structures with non-canonical base pairs. BMC Bioinform. 16: 276:1-276:12 (2015) - [j6]Piotr Lukasiak
RNAssess - a web server for quality assessment of RNA 3D structures. Nucleic Acids Res. 43(Webserver-Issue): W502-W506 (2015) - 2014
- [j5]Tomasz Zok
MCQ4Structures to compute similarity of molecule structures. Central Eur. J. Oper. Res. 22(3): 457-473 (2014) - [j4]Maciej Antczak
RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs. Nucleic Acids Res. 42(Webserver-Issue): 368-372 (2014) - 2010
- [j3]Mariusz Popenda, Marta Szachniuk
RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures. BMC Bioinform. 11: 231 (2010)
2000 – 2009
- 2009
- [c1]Marta Szachniuk
An assignment walk through 3D NMR spectrum. CIBCB 2009: 215-219 - 2008
- [j2]Mariusz Popenda
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures. Nucleic Acids Res. 36(Database-Issue): 386-391 (2008) - 2004
- [j1]Ryszard W. Adamiak
An Algorithm for an Automatic NOE Pathways Analysis of 2D NMR Spectra of RNA Duplexes. J. Comput. Biol. 11(1): 163-179 (2004)
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