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Monica Chagoyen
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2020 – today
- 2024
- [j21]Jorge Novoa, Javier López-Ibáñez, Monica Chagoyen
, Juan Antonio Garcia-Ranea, Florencio Pazos
CoMentG: comprehensive retrieval of generic relationships between biomedical concepts from the scientific literature. Database J. Biol. Databases Curation 2024 (2024) - 2023
- [j20]Javier López-Ibáñez, Florencio Pazos
MBROLE3: improved functional enrichment of chemical compounds for metabolomics data analysis. Nucleic Acids Res. 51(W1): 305-309 (2023) - 2021
- [j19]Javier López-Ibáñez
Predicting biological pathways of chemical compounds with a profile-inspired approach. BMC Bioinform. 22(1): 320 (2021)
2010 – 2019
- 2019
- [j18]Florencio Pazos
Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology. Briefings Bioinform. 20(4): 1329-1336 (2019) - [j17]Javier López-Ibáñez
Bacterial Feature Finder (BaFF) - a system for extracting features overrepresented in sets of prokaryotic organisms. Bioinform. 35(18): 3482-3483 (2019) - [j16]Monica Chagoyen
Complex genetic and epigenetic regulation deviates gene expression from a unifying global transcriptional program. PLoS Comput. Biol. 15(9) (2019) - 2017
- [j15]Sara González-Pérez, Florencio Pazos
Factors affecting interactome-based prediction of human genes associated with clinical signs. BMC Bioinform. 18(1): 340 (2017) - 2016
- [j14]Monica Chagoyen
Practical analysis of specificity-determining residues in protein families. Briefings Bioinform. 17(2): 255-261 (2016) - [j13]Monica Chagoyen
Characterization of clinical signs in the human interactome. Bioinform. 32(12): 1761-1765 (2016) - [j12]Javier López-Ibáñez
MBROLE 2.0 - functional enrichment of chemical compounds. Nucleic Acids Res. 44(Webserver-Issue): W201-W204 (2016) - 2013
- [j11]Monica Chagoyen
Tools for the functional interpretation of metabolomic experiments. Briefings Bioinform. 14(6): 737-744 (2013) - 2011
- [j10]Monica Chagoyen
MBRole: enrichment analysis of metabolomic data. Bioinform. 27(5): 730-731 (2011) - 2010
- [j9]Monica Chagoyen
Quantifying the biological significance of gene ontology biological processes - implications for the analysis of systems-wide data. Bioinform. 26(3): 378-384 (2010)
2000 – 2009
- 2009
- [j8]Miguel Vázquez
SENT: semantic features in text. Nucleic Acids Res. 37(Web-Server-Issue): 153-159 (2009) - 2008
- [j7]Monica Chagoyen
Assessment of protein set coherence using functional annotations. BMC Bioinform. 9 (2008) - [c3]Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano:
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP 2008: 108-109 - [c2]Miguel Vázquez
Named Entity Recognition and Normalization: A Domain-Specific Language Approach. IWPACBB 2008: 147-155 - 2006
- [j6]Monica Chagoyen
Discovering semantic features in the literature: a foundation for building functional associations. BMC Bioinform. 7: 41 (2006) - [j5]Pedro Carmona-Saez
Integrated analysis of gene expression by association rules discovery. BMC Bioinform. 7: 54 (2006) - [j4]Monica Chagoyen
A literature-based similarity metric for biological processes. BMC Bioinform. 7: 363 (2006) - [j3]Alberto D. Pascual-Montano, Pedro Carmona-Saez
bioNMF: a versatile tool for non-negative matrix factorization in biology. BMC Bioinform. 7: 366 (2006) - 2004
- [j2]Monica Chagoyen
Designing and executing scientific workflows with a programmable integrator. Bioinform. 20(13): 2092-2100 (2004) - 2003
- [c1]Monica Chagoyen, M. Erdem Kurul, Pedro A. de Alarcón, Simone Santini, Bertram Ludäscher, José María Carazo, Amarnath Gupta:
A Semantic Mediation Approach for Problems in Computational Molecular Biology. CSB 2003: 386-387
1990 – 1999
- 1999
- [j1]José María Carazo, Ernst H. K. Stelzer
Organising multi-dimensional biological image information: the BioImage Database. Nucleic Acids Res. 27(1): 280-283 (1999)
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