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Peter Dittrich
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- affiliation: Friedrich Schiller University Jena, Institute of Computer Science
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2020 – today
- 2021
- [j39]Stephan Peter
, Bashar Ibrahim
Linking Network Structure and Dynamics to Describe the Set of Persistent Species in Reaction Diffusion Systems. SIAM J. Appl. Dyn. Syst. 20(4): 2037-2076 (2021)
2010 – 2019
- 2019
- [j38]Matthew D. Egbert, Gerd Gruenert, Bashar Ibrahim
Combining evolution and self-organization to find natural Boolean representations in unconventional computational media. Biosyst. 184 (2019) - 2018
- [j37]Peter Dittrich:
Towards measuring the semantic capacity of a physical medium demonstrated with elementary cellular automata. Biosyst. 164: 177-185 (2018) - [j36]Chunyan Mu
Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 15(4): 1152-1166 (2018) - 2017
- [j35]Konrad Gizynski
Evolutionary Design of Classifiers Made of Droplets Containing a Nonlinear Chemical Medium. Evol. Comput. 25(4) (2017) - 2016
- [j34]Jan Huwald, Stephan Richter, Bashar Ibrahim
Compressing molecular dynamics trajectories: Breaking the one-bit-per-sample barrier. J. Comput. Chem. 37(20): 1897-1906 (2016) - [c38]Chunyan Mu, Peter Dittrich, David Parker
Formal Quantitative Analysis of Reaction Networks Using Chemical Organisation Theory. CMSB 2016: 232-251 - [i3]Jan Huwald, Stephan Richter, Peter Dittrich:
Compressing molecular dynamics trajectories: breaking the one-bit-per-sample barrier. CoRR abs/1601.02687 (2016) - 2015
- [j33]Martyn Amos, Steen Rasmussen, John S. McCaskill
Editorial. Artif. Life 21(2): 193-194 (2015) - [j32]Richard Henze, Jan Huwald, Nelly Mostajo, Peter Dittrich, Bashar Ibrahim
Structural analysis of in silico mutant experiments of human inner-kinetochore structure. Biosyst. 127: 47-59 (2015) - [j31]Stephan Richter, Ingo Fetzer
Towards rule-based metabolic databases: a requirement analysis based on KEGG. Int. J. Data Min. Bioinform. 13(3): 289-319 (2015) - [j30]Gerd Gruenert, Konrad Gizynski
Understanding Networks of Computing Chemical Droplet Neurons Based on Information Flow. Int. J. Neural Syst. 25(7): 1450032:1-1450032:17 (2015) - 2014
- [j29]Peter Kreyssig, Christian Wozar, Stephan Peter, Tomas Veloz
Effects of small particle numbers on long-term behaviour in discrete biochemical systems. Bioinform. 30(17): 475-481 (2014) - [j28]Andrew Adamatzky, Benjamin de Lacy Costello
On logical universality of Belousov-Zhabotinsky vesicles. Int. J. Gen. Syst. 43(7): 757-769 (2014) - [j27]Gabi Escuela, Gerd Gruenert, Peter Dittrich:
Symbol representations and signal dynamics in evolving droplet computers. Nat. Comput. 13(2): 247-256 (2014) - [c37]Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruelheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. DATA 2014: 251-257 - 2013
- [j26]Christian Knüpfer, Clemens Beckstein, Peter Dittrich, Nicolas Le Novère:
Structure, function, and behaviour of computational models in systems biology. BMC Syst. Biol. 7: 43 (2013) - [j25]Gerd Gruenert, Jan Szymanski, Julian Holley, Gabi Escuela, Alexandra Diem, Bashar Ibrahim, Andrew Adamatzky, Jerzy Gorecki, Peter Dittrich:
Multi-scale Modelling of Computers Made from Excitable Chemical Droplets. Int. J. Unconv. Comput. 9(3-4): 237-266 (2013) - [c36]Matthew D. Egbert, Gerd Gruenert, Gabi Escuela, Peter Dittrich:
Synthetic signalling protocell networks as models of neural computation. ECAL 2013: 248-249 - 2012
- [j24]Andrew Adamatzky, Julian Holley, Peter Dittrich, Jerzy Gorecki
On architectures of circuits implemented in simulated Belousov-Zhabotinsky droplets. Biosyst. 109(1): 72-77 (2012) - [c35]Gerd Gruenert, Gabi Escuela, Peter Dittrich:
Symbol Representations in Evolving Droplet Computers. UCNC 2012: 130-140 - 2011
- [j23]Stephan Peter, Peter Dittrich:
On the Relation between Organizations and Limit Sets in Chemical Reaction Systems. Adv. Complex Syst. 14(1): 77-96 (2011) - [c34]Peter Kreyssig, Peter Dittrich:
Reaction flow artificial chemistries. ECAL 2011: 431-437 - [c33]Tomas Veloz, Bryan Reynaert, David Rojas-Camaggi, Peter Dittrich:
A decomposition theorem in chemical organizations. ECAL 2011: 820-827 - [c32]Martyn Amos, Peter Dittrich, John S. McCaskill
Biological and Chemical Information Technologies. FET 2011: 56-60 - [p4]Peter Kreyssig, Peter Dittrich:
Emergent Control. Organic Computing 2011: 67-78 - [p3]Naoki Matsumaru, Peter Kreyssig, Peter Dittrich:
Organisation-Oriented Chemical Programming. Organic Computing 2011: 207-220 - [p2]Peter Kreyssig, Peter Dittrich:
On the Future of Chemistry-Inspired Computing. Organic Computing 2011: 583-585 - [i2]Gerd Gruenert, Peter Dittrich, Klaus-Peter Zauner:
Artificial Wet Neuronal Networks from Compartmentalised Excitable Chemical Media. ERCIM News 2011(85): 30-32 (2011) - 2010
- [j22]Florian Centler
A parallel algorithm to compute chemical organizations in biological networks. Bioinform. 26(14): 1788-1789 (2010) - [j21]Gerd Gruenert, Bashar Ibrahim
Rule-based spatial modeling with diffusing, geometrically constrained molecules. BMC Bioinform. 11: 307 (2010) - [c31]Dennis Görlich, Peter Dittrich:
On the Semantic Capacity of (Bio-)Chemical Systems. ALIFE 2010: 221-222 - [c30]Gabi Escuela, Thomas Hinze, Peter Dittrich, Stefan Schuster, Mario Moreno-Álvarez:
Modelling Modified Atmosphere Packaging for Fruits and Vegetables using Membrane Systems. BIOSIGNALS 2010: 306-311 - [c29]Peter Dittrich:
Organization Oriented Chemical Computing. Int. Conf. on Membrane Computing 2010: 18 - [c28]Gerd Grünert, Peter Dittrich:
Using the SRSim Software for Spatial and Rule-Based Modeling of Combinatorially Complex Biochemical Reaction Systems. Int. Conf. on Membrane Computing 2010: 240-256 - [c27]Stephan Peter, Tomas Veloz
Feasibility of Organizations - A Refinement of Chemical Organization Theory with Application to P Systems. Int. Conf. on Membrane Computing 2010: 325-337 - [c26]Peter Kreyssig, Peter Dittrich:
Fragments and Chemical Organisations. SASB 2010: 19-41
2000 – 2009
- 2009
- [j20]Hideaki Suzuki, Peter Dittrich:
Artificial Chemistry. Artif. Life 15(1): 1-3 (2009) - [j19]Gil Benkö, Florian Centler
A Topological Approach to Chemical Organizations. Artif. Life 15(1): 71-88 (2009) - [j18]Christoph Kaleta
Using chemical organization theory for model checking. Bioinform. 25(15): 1915-1922 (2009) - [j17]Bashar Ibrahim
In silico study of kinetochore control, amplification, and inhibition effects in MCC assembly. Biosyst. 95(1): 35-50 (2009) - [j16]Thomas Hinze, Raffael Faßler, Thorsten Lenser, Peter Dittrich:
Register Machine Computations on Binary Numbers by oscillating and Catalytic Chemical reactions Modelled Using Mass-Action kinetics. Int. J. Found. Comput. Sci. 20(3): 411-426 (2009) - [j15]Naoki Matsumaru, Thomas Hinze, Peter Dittrich:
Organization-Oriented Chemical Programming of Distributed Artifacts. Int. J. Nanotechnol. Mol. Comput. 1(4): 1-19 (2009) - [j14]Thorsten Lenser, Günter Theißen, Peter Dittrich:
Developmental Robustness by Obligate Interaction of Class B Floral Homeotic Genes and Proteins. PLoS Comput. Biol. 5(1) (2009) - [c25]Dennis Görlich
Identifying Molecular Organic Codes in Reaction Networks. ECAL (1) 2009: 305-312 - [c24]Pietro Speroni di Fenizio
Flying over Mount Improbable. ECAL (1) 2009: 385-393 - [r1]Peter Dittrich:
ArtificialChemistry. Encyclopedia of Complexity and Systems Science 2009: 326-344 - 2008
- [j13]Peter Dittrich, Lars Winter:
Chemical Organizations in a Toy Model of the Political System. Adv. Complex Syst. 11(4): 609-627 (2008) - [j12]Florian Centler
Computing chemical organizations in biological networks. Bioinform. 24(14): 1611-1618 (2008) - [j11]Christoph Kaleta
Phenotype prediction in regulated metabolic networks. BMC Syst. Biol. 2: 37 (2008) - [c23]Thorsten Lenser, Naoki Matsumaru, Thomas Hinze, Peter Dittrich:
Tracking the Evolution of Chemical Computing Networks. ALIFE 2008: 343-350 - [c22]Peter Dittrich, Florian Centler, Christoph Kaleta, Naoki Matsumaru, Pietro Speroni di Fenizio:
Chemical organizations in living systems. ALIFE 2008: 762 - [c21]Thomas Hinze, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich, Sikander Hayat:
Biosignal-Based Computing By AHL Induced Synthetic Gene Regulatory Networks - From an in vivo Flip-Flop Implementation to Programmable Computing Agents. BIOSIGNALS (1) 2008: 162-169 - [c20]Hendrik Rohn, Bashar Ibrahim
Enhancing Parameter Estimation of Biochemical Networks by Exponentially Scaled Search Steps. EvoBIO 2008: 177-187 - [c19]Thomas Hinze, Raffael Faßler, Thorsten Lenser, Naoki Matsumaru, Peter Dittrich:
Event-Driven Metamorphoses of P Systems. Workshop on Membrane Computing 2008: 231-245 - [i1]Hidir Aras, Clemens Beckstein, Sonja Buchegger, Peter Dittrich, Thomas Hubauer, Friederike Klan, Birgitta König-Ries, Ouri Wolfson:
08421 Working Group: Uncertainty and Trust. Uncertainty Management in Information Systems 2008 - 2007
- [j10]Naoki Matsumaru, Thorsten Lenser, Thomas Hinze
Designing a chemical program using chemical organization theory. BMC Syst. Biol. 1(S-1): P26 (2007) - [j9]Christian Knüpfer, Clemens Beckstein, Peter Dittrich:
How to formalise the meaning of a bio-model: a case study. BMC Syst. Biol. 1(S-1): P28 (2007) - [j8]Naoki Matsumaru, Florian Centler, Pietro Speroni di Fenizio, Peter Dittrich:
Chemical Organization Theory as a Theoretical Base for Chemical Computing. Int. J. Unconv. Comput. 3(4): 285-309 (2007) - [j7]Bashar Ibrahim
Stochastic effects in a compartmental model for mitotic checkpoint regulation. J. Integr. Bioinform. 4(3) (2007) - [c18]Pietro Speroni di Fenizio, Peter Dittrich:
Chemical Organizations at Different Spatial Scales. ECAL 2007: 1-11 - [c17]Thorsten Lenser, Thomas Hinze, Bashar Ibrahim
Towards Evolutionary Network Reconstruction Tools for Systems Biology. EvoBIO 2007: 132-142 - [c16]Peter Dittrich, Naoki Matsumaru:
Organization-Oriented Chemical Programming. HIS 2007: 18-23 - [c15]Thomas Hinze, Sikander Hayat
Hill Kinetics Meets P Systems: A Case Study on Gene Regulatory Networks as Computing Agents in silico and in vivo. Workshop on Membrane Computing 2007: 320-335 - [p1]Naoki Matsumaru, Thorsten Lenser, Thomas Hinze, Peter Dittrich:
Toward Organization-Oriented Chemical Programming: A Case Study with the Maximal Independent Set Problem. Advances in Biologically Inspired Information Systems 2007: 147-163 - 2006
- [j6]Naoki Matsumaru, Florian Centler
Chemical Organization Theory Applied to Virus Dynamics (Theorie chemischer Organisationen angewendet auf Infektionsmodelle). it Inf. Technol. 48(3): 154-160 (2006) - [c14]Naoki Matsumaru, Peter Dittrich:
Organization-oriented chemical programming for the organic design of distributed computing systems. BIONETICS 2006: 14 - [c13]Clemens Beckstein, Peter Dittrich, Christian Erfurth
SOGOS - A Distributed Meta Level Architecture for the Self-Organizing Grid of Services. MDM 2006: 82 - [c12]Thomas Hinze, Thorsten Lenser, Peter Dittrich:
A Protein Substructure Based P System for Description and Analysis of Cell Signalling Networks. Workshop on Membrane Computing 2006: 409-423 - [c11]Christian Knüpfer, Clemens Beckstein, Peter Dittrich:
Towards a Semantic Description of Bio-Models: Meaning Facets - A Case Study. SMBM 2006 - 2005
- [c10]Peter Dittrich:
The Bio-Chemical Information Processing Metaphor as a Programming Paradigm for Organic Computing. ARCS Workshops 2005: 95-99 - 2004
- [j5]Christian Lasarczyk, Peter Dittrich, Wolfgang Banzhaf
Dynamic Subset Selection Based on a Fitness Case Topology. Evol. Comput. 12(2): 223-242 (2004) - [c9]Naoki Matsumaru, Florian Centler, Klaus-Peter Zauner, Peter Dittrich:
Self-Adaptive Scouting - Autonomous Experimentation for Systems Biology. EvoWorkshops 2004: 52-62 - [c8]Peter Dittrich:
Chemical Computing. UPP 2004: 19-32 - 2003
- [j4]Peter Dittrich, Thomas Kron, Wolfgang Banzhaf:
On the Scalability of Social Order: Modeling the Problem of Double and Multi Contingency Following Luhmann. J. Artif. Soc. Soc. Simul. 6(1) (2003) - [c7]Florian Centler
Artificial Life as an Aid to Astrobiology: Testing Life Seeking Techniques. ECAL 2003: 31-40 - [e1]Wolfgang Banzhaf, Thomas Christaller, Peter Dittrich, Jan T. Kim, Jens Ziegler:
Advances in Artificial Life, 7th European Conference, ECAL 2003, Dortmund, Germany, September 14-17, 2003, Proceedings. Lecture Notes in Computer Science 2801, Springer 2003, ISBN 3-540-20057-6 [contents] - 2001
- [j3]Peter Dittrich, Jens Ziegler, Wolfgang Banzhaf
Artificial Chemistries-A Review. Artif. Life 7(3): 225-275 (2001) - [c6]Peter Dittrich, Wolfgang Banzhaf:
Survival of the Unfittest? - The Seceder Model and Its Fitness Landscape. ECAL 2001: 100-109 - [c5]Pietro Speroni di Fenizio, Peter Dittrich, Wolfgang Banzhaf:
Spontaneous Formation of Proto-cells in an Universal Artificial Chemistry on a Planar Graph. ECAL 2001: 206-215 - 2000
- [j2]Andre Skusa, Wolfgang Banzhaf, Jens Busch, Peter Dittrich, Jens Ziegler:
Künstliche Chemie. Künstliche Intell. 14(1): 12-19 (2000)
1990 – 1999
- 1999
- [c4]Wolfgang Kantschik, Peter Dittrich, Markus Brameier, Wolfgang Banzhaf:
Empirical analysis of different levels of meta-evolution. CEC 1999: 2086-2093 - [c3]Wolfgang Kantschik, Peter Dittrich, Markus Brameier, Wolfgang Banzhaf:
Meta-Evolution in Graph GP. EuroGP 1999: 15-28 - [c2]Peter Dittrich, Andre Skusa, Wolfgang Kantschik, Wolfgang Banzhaf:
Dynamical Properties of the Fitness Landscape of a GP Controlled Random Morphology Robot. GECCO 1999: 1002-1008 - 1998
- [j1]Peter Dittrich, Wolfgang Banzhaf
Self-Evolution in a Constructive Binary String System. Artif. Life 4(2): 203-220 (1998) - [c1]Peter Dittrich, Andreas Bürgel, Wolfgang Banzhaf:
Learning to Move a Robot with Random Morphology. EvoRobot 1998: 165-178
Coauthor Index
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