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17. RECOMB 2013: Beijing, China
- Minghua Deng, Rui Jiang, Fengzhu Sun, Xuegong Zhang:
Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Beijing, China, April 7-10, 2013. Proceedings. Lecture Notes in Computer Science 7821, Springer 2013, ISBN 978-3-642-37194-3 - Mukul S. Bansal
, Eric J. Alm, Manolis Kellis:
Reconciliation Revisited: Handling Multiple Optima When Reconciling with Duplication, Transfer, and Loss. 1-13 - Shijian Chen, Anqi Wang, Lei M. Li:
SEME: A Fast Mapper of Illumina Sequencing Reads with Statistical Evaluation. 14-29 - Dong-Yeon Cho
Dissecting Cancer Heterogeneity with a Probabilistic Genotype-Phenotype Model. 30-31 - Itamar Eskin, Farhad Hormozdiari, Lucía Conde
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data. 32-44 - Ali A. Faruqi, William A. Bryant, John W. Pinney:
Analysis of Metabolic Evolution in Bacteria Using Whole-Genome Metabolic Models. 45-57 - Fei Guo, Shuai Cheng Li
Detecting Protein Conformational Changes in Interactions via Scaling Known Structures. 58-74 - Dan He, Zhanyong Wang, Buhm Han, Laxmi Parida, Eleazar Eskin:
IPED: Inheritance Path Based Pedigree Reconstruction Algorithm Using Genotype Data. 75-87 - Jesper Jansson
An Optimal Algorithm for Building the Majority Rule Consensus Tree. 88-99 - Kyowon Jeong, Sangtae Kim, Pavel A. Pevzner:
UniNovo: A Universal Tool for de Novo Peptide Sequencing. 100-117 - Emrah Kostem, Eleazar Eskin:
Efficiently Identifying Significant Associations in Genome-Wide Association Studies. 118-131 - Xiaowen Liu
Identification of Ultramodified Proteins Using Top-Down Spectra. 132-144 - Alina Munteanu, Raluca Gordân:
Distinguishing between Genomic Regions Bound by Paralogous Transcription Factors. 145-157 - Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. 158-170 - Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael:
Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data. 171-172 - Kriti Puniyani, Eric P. Xing:
NP-MuScL: Unsupervised Global Prediction of Interaction Networks from Multiple Data Sources. 173-185 - Christopher Reeder, David Gifford:
High Resolution Modeling of Chromatin Interactions. 186-198 - Vladimir Reinharz
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs. 199-211 - Jesse M. Rodriguez, Serafim Batzoglou, Sivan Bercovici:
An Accurate Method for Inferring Relatedness in Large Datasets of Unphased Genotypes via an Embedded Likelihood-Ratio Test. 212-229 - Roy Ronen, Nitin Udpa, Eran Halperin, Vineet Bafna:
Learning Natural Selection from the Site Frequency Spectrum. 230-233 - Mohammad Javad Sadeh, Giusi Moffa
Considering Unknown Unknowns - Reconstruction of Non-confoundable Causal Relations in Biological Networks. 234-248 - Raheleh Salari, Syed Shayon Saleh, Dorna Kashef Haghighi, David Khavari, Daniel E. Newburger, Robert B. West, Arend Sidow, Serafim Batzoglou:
Inference of Tumor Phylogenies with Improved Somatic Mutation Discovery. 249-263 - Evan Senter, Saad Sheikh, Iván Dotú, Yann Ponty
Abstract: Using the Fast Fourier Transform to Accelerate the Computational Search for RNA Conformational Switches. 264-265 - Michael Stevens, Jeffrey B. Cheng, Mingchao Xie, Joseph F. Costello, Ting Wang:
MethylCRF, an Algorithm for Estimating Absolute Methylation Levels at Single CpG Resolution from Methylation Enrichment and Restriction Enzyme Sequencing Methods. 266-268 - Ngoc Hieu Tran, Kwok Pui Choi, Louxin Zhang:
Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract). 269-270 - Chittaranjan Tripathy, Anthony K. Yan, Pei Zhou
Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure. 271-284 - Fabio Vandin, Alexandra Papoutsaki, Benjamin J. Raphael, Eli Upfal
Genome-Wide Survival Analysis of Somatic Mutations in Cancer. 285-286 - Mingxun Wang, Nuno Bandeira:
Spectral Library Generating Function for Assessing Spectrum-Spectrum Match Significance. 287-288 - Sebastian Will, Christina Schmiedl, Milad Miladi
SPARSE: Quadratic Time Simultaneous Alignment and Folding of RNAs without Sequence-Based Heuristics. 289-290 - Yufeng Wu:
An Algorithm for Constructing Parsimonious Hybridization Networks with Multiple Phylogenetic Trees. 291-303 - Dong Xu, Hua Li, Yang Zhang
Fast and Accurate Calculation of Protein Depth by Euclidean Distance Transform. 304-316 - ZhiZhuo Zhang, Guoliang Li
Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data. 317-332 - Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Shuigeng Zhou:
Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties - (Extended Abstract). 333-344
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