Computer Methods and Programs in Biomedicine, Volume 231

Volume 231, April 2023

Section V: Others

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  Seifollah Gholampour, Hemalatha Balasundaram, Padmavathi Thiyagarajan, Julie Droessler:
  A mathematical framework for the dynamic interaction of pulsatile blood, brain, and cerebrospinal fluid. 107209
• 
  Jiayuan Peng, Cui Yang, Hongbo Guo, Lijun Shen, Min Zhang, Jiazhou Wang, Zhen Zhang, Bin Cai, Weigang Hu:
  Toward real-time automatic treatment planning (RTTP) with a one-step 3D fluence map prediction method and (nonorthogonal) convolution technique. 107263
• 
  Dongmei Zhu, Hongxu He, Dongbo Wang:
  Feedback attention network for cardiac magnetic resonance imaging super-resolution. 107313

Section IV: Classification and interpretation

• 
  Weining Wang, Meige Luo, Peirong Guo, Yan Wei, Yan Tan, Hongxia Shi:
  Artificial intelligence-assisted diagnosis of hematologic diseases based on bone marrow smears using deep neural networks. 107343

Section I: Biocybernetics and Big Data

• 
  Tahmina Nasrin Poly, Md. Mohaimenul Islam, Bruno Andreas Walther, Ming Chin Lin, Yu-Chuan (Jack) Li:
  Artificial intelligence in diabetic retinopathy: Bibliometric analysis. 107358

Section IV: Classification and interpretation

• 
  Yu-Sheng Lou, Chin-Sheng Lin, Wen-Hui Fang, Chia-Cheng Lee, Chin Lin:
  Extensive deep learning model to enhance electrocardiogram application via latent cardiovascular feature extraction from identity identification. 107359

Section III: Modelling & Simulation

• 
  Mohd Faizal Ali Akhbar:
  Thermomechanical damage in cortical bone caused by margins of surgical drill bit: A finite element analysis. 107361

Section II: Biomedical signal and image processing methods

• 
  Stefanos Gkikas, Manolis Tsiknakis:
  Automatic assessment of pain based on deep learning methods: A systematic review. 107365

Section V: Others

• 
  Matthias Peiffer, Kate Duquesne, Aline Van Oevelen, Arne Burssens, Sophie De Mits, S. A. Maas, Penny R. Atkins, A. E. Anderson, Emmanuel Albert Audenaert:
  Validation of a personalized ligament-constraining discrete element framework for computing ankle joint contact mechanics. 107366
• 
  Rahul Singh, Rituraj Purohit:
  Computational analysis of protein-ligand interaction by targeting a cell cycle restrainer. 107367
• 
  Inès Douania, Jérémy Laforêt, Sofiane Boudaoud:
  Robust morris screening method (RMSM) for complex physiological models. 107368

Section III: Modelling & Simulation

• 
  Ana Carrasco-Mantis, Tomás Alarcón, José Antonio Sanz-Herrera:
  An in silico study on the influence of extracellular matrix mechanics on vasculogenesis. 107369
• 
  Taiwei Liu, Xuanyu Li, Yue Wang, Mi Zhou, Fuyou Liang:
  Computational modeling of electromechanical coupling in human cardiomyocyte applied to study hypertrophic cardiomyopathy and its drug response. 107372

Section V: Others

• 
  Gaetano Manzo, Yvan Pannatier, Patrick Duflot, Philippe Kolh, Marcela Chavez, Valérie Bleret, Davide Calvaresi, Oscar Alfonso Jiménez del Toro, Michael Schumacher, Jean-Paul Calbimonte:
  Breast cancer survival analysis agents for clinical decision support. 107373

Section II: Biomedical signal and image processing methods

• 
  Elias Rüfenacht, Amith Kamath, Yannick Suter, Robert Poel, Ekin Ermis, Stefan Scheib, Mauricio Reyes:
  PyRaDiSe: A Python package for DICOM-RT-based auto-segmentation pipeline construction and DICOM-RT data conversion. 107374

Section IV: Classification and interpretation

• 
  Namho Kim, Wonju Seo, Ju-ho Kim, So Yoon Choi, Sung-Min Park:
  WavelNet: A novel convolutional neural network architecture for arrhythmia classification from electrocardiograms. 107375

Section V: Others

• 
  Mohammad Reza Niroomand, Masoud Arabbeiki, Gholamreza Rouhi:
  Optimization of thread configuration in dental implants through regulating the mechanical stimuli in neighboring bone. 107376

Section IV: Classification and interpretation

• 
  Ping Gong, Lei Cheng, Zhiyuan Zhang, Ao Meng, Enshuo Li, Jie Chen, Longzhen Zhang:
  Multi-omics integration method based on attention deep learning network for biomedical data classification. 107377

Section V: Others

• 
  Huamei Qi, Xiaomeng Song, Shengzong Liu, Yan Zhang, Kelvin Kian Loong Wong:
  KFPredict: An ensemble learning prediction framework for diabetes based on fusion of key features. 107378
• 
  María Isabel Ortiz-Lizcano, Enrique Arias-Antúnez, Ángel Hernández-Bravo, María Blanca Caminero, Tomás Rojo Guillen, Syong Hyun Nam Cha:
  Increasing the security and traceability of biological samples in biobanks by blockchain technology. 107379

Section II: Biomedical signal and image processing methods

• 
  Xuefen Lin, Jielin Chen, Weifeng Ma, Wei Tang, Yuchen Wang:
  EEG emotion recognition using improved graph neural network with channel selection. 107380

Section V: Others

• 
  Erdal Özbay, Feyza Altunbey Özbay:
  Interpretable features fusion with precision MRI images deep hashing for brain tumor detection. 107387

Section II: Biomedical signal and image processing methods

• 
  Frederico Barbosa Muniz, Matheus de Freitas Oliveira Baffa, Sergio Britto Garcia, Luciano Bachmann, Joaquim Cezar Felipe:
  Histopathological diagnosis of colon cancer using micro-FTIR hyperspectral imaging and deep learning. 107388
• 
  Haowen Pang, Shouliang Qi, Yanan Wu, Meihuan Wang, Chen Li, Yu Sun, Wei Qian, Guoyan Tang, Jiaxuan Xu, Zhenyu Liang, Rongchang Chen:
  NCCT-CECT image synthesizers and their application to pulmonary vessel segmentation. 107389

Section V: Others

• 
  Yuan Li, Hongyu Wang, Yifeng Xi, Anqiang Sun, Lizhen Wang, Xiaoyan Deng, Zengsheng Chen, Yubo Fan:
  A mathematical model for assessing shear induced bleeding risk. 107390

Section II: Biomedical signal and image processing methods

• 
  Liming Zhong, Pinyu Huang, Hai Shu, Yin Li, Yiwen Zhang, Qianjin Feng, Yuankui Wu, Wei Yang:
  United multi-task learning for abdominal contrast-enhanced CT synthesis through joint deformable registration. 107391
• 
  Kai Xie, Liugang Gao, Qianyi Xi, Heng Zhang, Sai Zhang, Fan Zhang, Jiawei Sun, Tao Lin, Jianfeng Sui, Xinye Ni:
  New technique and application of truncated CBCT processing in adaptive radiotherapy for breast cancer. 107393
• 
  Wenju Du, Nini Rao, Jiahao Yong, Prince Ebenezer Adjei, Xiaoming Hu, Xiaotong Wang, Tao Gan, Linlin Zhu, Bing Zeng, Mengyuan Liu, Yongxue Xu:
  Early gastric cancer segmentation in gastroscopic images using a co-spatial attention and channel attention based triple-branch ResUnet. 107397
• 
  Guotai Wang, Xiangde Luo, Ran Gu, Shuojue Yang, Yijie Qu, Shuwei Zhai, Qianfei Zhao, Kang Li, Shaoting Zhang:
  PyMIC: A deep learning toolkit for annotation-efficient medical image segmentation. 107398
• 
  Suigu Tang, Xiaoyuan Yu, Chak-Fong Cheang, Xiaoyu Ji, Hon Ho Yu, I. Cheong Choi:
  CLELNet: A continual learning network for esophageal lesion analysis on endoscopic images. 107399

Section V: Others

• 
  Carmine Porcaro, Mahdi Saeedipour:
  Hemolysis prediction in bio-microfluidic applications using resolved CFD-DEM simulations. 107400

Section III: Modelling & Simulation

• 
  Célestin Bigarré, François Bertucci, Pascal Finetti, Gaetan MacGrogan, Xavier Muracciole, Sébastien Benzekry:
  Mechanistic modeling of metastatic relapse in early breast cancer to investigate the biological impact of prognostic biomarkers. 107401
• 
  Matteo Salvador, Francesco Regazzoni, Luca Dede', Alfio Quarteroni:
  Fast and robust parameter estimation with uncertainty quantification for the cardiac function. 107402
• 
  Erick Orozco-Acosta, Aritz Adin, María Dolores Ugarte:
  Big problems in spatio-temporal disease mapping: Methods and software. 107403

Section II: Biomedical signal and image processing methods

• 
  Meng Suo, Dong Zhang, Haiqi Yang, Yan Yang:
  Application of full waveform inversion algorithm in Laplace-Fourier domain for high-contrast ultrasonic bone quantitative imaging. 107404

Section V: Others

• 
  José M. Ordovás, David Ríos Insua, Alejandro Santos-Lozano, Alejandro Lucia, A. Torres, Alex Kosgodagan, José Manuel Camacho:
  A Bayesian network model for predicting cardiovascular risk. 107405

Section II: Biomedical signal and image processing methods

• 
  Muhamed Vila, Massimo Walter Rivolta, Cristian Barrios Espinosa, Laura A. Unger, Armin Luik, Axel Loewe, Roberto Sassi:
  Recommender system for ablation lines to treat complex atrial tachycardia. 107406

Section V: Others

• 
  Avishka Wickramarachchi, Mehrdad Khamooshi, Aidan Burrell, Vincent A. Pellegrino, David M. Kaye, Shaun D. Gregory:
  The effect of drainage cannula tip position on risk of thrombosis during venoarterial extracorporeal membrane oxygenation. 107407
• 
  Meghana Karri, Chandra Sekhara Rao Annavarapu, U. Rajendra Acharya:
  Skin lesion segmentation using two-phase cross-domain transfer learning framework. 107408
• 
  Ilaria Toniolo, Alice Berardo, Michel Gagner, Mirto Foletto, Emanuele Luigi Carniel:
  Unveiling the effects of key factors in enhancing gastroesophageal reflux: A fluid-structure analysis before and after laparoscopic sleeve gastrectomy. 107409
• 
  Jessica Benitez Mendieta, Davide Fontanarosa, Jiaqiu Wang, Phani Kumari Paritala, Juanita Muller, Thomas Lloyd, Zhiyong Li:
  MRI-based mechanical analysis of carotid atherosclerotic plaque using a material-property-mapping approach: A material-property-mapping method for plaque stress analysis. 107417

Section III: Modelling & Simulation

• 
  Harry J. Carpenter, Mergen H. Ghayesh, Anthony C. Zander, Peter J. Psaltis:
  On the nonlinear relationship between wall shear stress topology and multi-directionality in coronary atherosclerosis. 107418
• 
  Muhammed Masudur Rahman, Paul N. Watton, Corey P. Neu, David M. Pierce:
  A chemo-mechano-biological modeling framework for cartilage evolving in health, disease, injury, and treatment. 107419
• 
  Amit Krishan Kumar, Snigdha Jain, Shirin Jain, M. Ritam, Yuanqing Xia, Rohitash Chandra:
  Physics-informed neural entangled-ladder network for inhalation impedance of the respiratory system. 107421

Section IV: Classification and interpretation

• 
  Binbin Tong, Tingxi Wen, Yu Du, Ting Pan:
  Cell image instance segmentation based on PolarMask using weak labels. 107426

Section III: Modelling & Simulation

• 
  Gustavo P. Carmo, Mateusz Dymek, Mariusz Ptak, Ricardo Alves de Sousa, Fábio A. O. Fernandes:
  Development, validation and a case study: The female finite element head model (FeFEHM). 107430

Diagnostics and Decision Support

• 
  Yang Ouyang, Meng Cheng, Bingqing He, Fengjuan Zhang, Wen Ouyang, Jianwu Zhao, Yang Qu:
  Interpretable machine learning models for predicting in-hospital death in patients in the intensive care unit with cerebral infarction. 107431

Section II: Biomedical signal and image processing methods

• 
  Pei Liu, Luping Ji, Feng Ye, Bo Fu:
  GraphLSurv: A scalable survival prediction network with adaptive and sparse structure learning for histopathological whole-slide images. 107433

Diagnostics and Decision Support

• 
  David Susic, Shabbir Syed-Abdul, Erik Dovgan, Jitendra Jonnagaddala, Anton Gradisek:
  Artificial intelligence based personalized predictive survival among colorectal cancer patients. 107435

Section V: Others

• 
  Yuan-Zhe Li, Yi Wang, Yin-Hui Huang, Ping Xiang, Wen-Xi Liu, Qing-Quan Lai, Yi-Yuan Gao, Mao-Sheng Xu, Yi-Fan Guo:
  RSU-Net: U-net based on residual and self-attention mechanism in the segmentation of cardiac magnetic resonance images. 107437