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Computer Physics Communications, Volume 244

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Volume 244, November 2019

Obituary

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Stan Scott:
Obituary. 1

Computational physics

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Haijian Yang, Shuyu Sun, Yiteng Li, Chao Yang:
Parallel reservoir simulators for fully implicit complementarity formulation of multicomponent compressible flows. 2-12
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Wenjin Gou, Shuai Zhang, Yao Zheng:
Implementation of the moving particle semi-implicit method for free-surface flows on GPU clusters. 13-24
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  - journals/cphysics/KallalaVV19
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Haithem Kallala, Jean-Luc Vay, Henri Vincenti:
A generalized massively parallel ultra-high order FFT-based Maxwell solver. 25-34
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Mark F. Adams, Stephen L. Cornford, Daniel F. Martin, Peter McCorquodale:
Composite matrix construction for structured grid adaptive mesh refinement. 35-39
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Yingfeng Xu, Wenfeng Guo, Youjun Hu, Lei Ye, Xiaotao Xiao, Shaojie Wang:
Monte Carlo orbit-following simulations including the finite Larmor radius effect based on a phase-space coordinate transform method. 40-48
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Andreas Bierwage, Timur Zh. Esirkepov, James K. Koga, Alexander S. Pirozhkov:
Similarity of magnetized plasma wake channels behind relativistic laser pulses with different wavelengths. 49-68
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Christopher M. Maynard, David N. Walters:
Mixed-precision arithmetic in the ENDGame dynamical core of the Unified Model, a numerical weather prediction and climate model code. 69-75
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Sebastian Eibl, Ulrich Rüde:
A systematic comparison of runtime load balancing algorithms for massively parallel rigid particle dynamics. 76-85
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  - journals/cphysics/KozynchenkoKO19
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Alexander I. Kozynchenko, Sergey A. Kozynchenko, Alexander D. Ovsyannikov:
Development of the C++ three-dimensional reference simulation model of the wedge-shaped beam dynamics. 86-96
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Shuyao Hu, Chongwen Jiang, Zhenxun Gao, Chun-Hian Lee:
Zonal disturbance region update method for steady compressible viscous flows. 97-116
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Lin Fu:
A very-high-order TENO scheme for all-speed gas dynamics and turbulence. 117-131
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Hadi Zolfaghari, Barna Becsek, Maria Giuseppina Chiara Nestola, William B. Sawyer, Rolf Krause, Dominik Obrist:
High-order accurate simulation of incompressible turbulent flows on many parallel GPUs of a hybrid-node supercomputer. 132-142
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Lukas Hörmann, Andreas Jeindl, Alexander T. Egger, Michael Scherbela, Oliver T. Hofmann:
SAMPLE: Surface structure search enabled by coarse graining and statistical learning. 143-155
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Maarten L. Van De Put, Massimo V. Fischetti, William G. Vandenberghe:
Scalable atomistic simulations of quantum electron transport using empirical pseudopotentials. 156-169
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Pablo de Castro, Tommaso Dorigo:
INFERNO: Inference-Aware Neural Optimisation. 170-179
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Sondre Vik Furuseth, Xavier Buffat:
Parallel high-performance multi-beam multi-bunch simulations. 180-186
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Jeffrey C. Heylmun, Bo Kong, Alberto Passalacqua, Rodney O. Fox:
A quadrature-based moment method for polydisperse bubbly flows. 187-204
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Jan-Frederik Mennemann, Tim Langen, Lukas Exl, Norbert J. Mauser:
Optimal control of the self-bound dipolar droplet formation process. 205-216
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Li Guang Jiao, Li Rong Zan, Lin Zhu, Jia Ma, Yew Kam Ho:
Accurate computation of screened Coulomb potential integrals in numerical Hartree-Fock programs. 217-227
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Raffaele Vitolo:
Computing with Hamiltonian operators. 228-245
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Arnaud Beck, Julien Derouillat, Mathieu Lobet, Asma Farjallah, Francesco Massimo, Imene Zemzemi, Frédéric Pérez, Tommaso Vinci, Mickael Grech:
Adaptive SIMD optimizations in particle-in-cell codes with fine-grain particle sorting. 246-263
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Takahiro Yamasaki, Akiyoshi Kuroda, Toshihiro Kato, Jun Nara, Junichiro Koga, Tsuyoshi Uda, Kazuo Minami, Takahisa Ohno:
Multi-axis decomposition of density functional program for strong scaling up to 82, 944 nodes on the K computer: Compactly folded 3D-FFT communicators in the 6D torus network. 264-276

Computer programs in physics

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Sangkook Choi, Patrick Semon, Byungkyun Kang, Andrey L. Kutepov, Gabriel Kotliar:
ComDMFT: A massively parallel computer package for the electronic structure of correlated-electron systems. 277-294
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Volodymyr Vovchenko, Horst Stöcker:
Thermal-FIST: A package for heavy-ion collisions and hadronic equation of state. 295-310
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Zhiwei Ren, Lichuan Jin, Tianlong Wen, Yulong Liao, Xiaoli Tang, Huaiwu Zhang, Zhiyong Zhong:
MuFA (Multi-type Fourier Analyzer): A tool for batch generation of MuMax3 input scripts and multi-type Fourier analysis from micromagnetic simulation output data. 311-318
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Kazuyoshi Yoshimi, Junya Otsuki, Yuichi Motoyama, Masayuki Ohzeki, Hiroshi Shinaoka:
SpM: Sparse modeling tool for analytic continuation of imaginary-time Green's function. 319-323
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Dab Brill, Jason B. Giles, Ian S. Haworth, Aiichiro Nakano:
WaterAlignment: Identification of displaced water molecules in molecular docking using Jonker and Volgenant shortest path augmentation for linear assignment. 324-328
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John Buckeridge:
Equilibrium point defect and charge carrier concentrations in a material determined through calculation of the self-consistent Fermi energy. 329-342
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Hua-sheng Xie:
BO: A unified tool for plasma waves and instabilities analysis. 343-371
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Noritaka Shimizu, Takahiro Mizusaki, Yutaka Utsuno, Yusuke Tsunoda:
Thick-restart block Lanczos method for large-scale shell-model calculations. 372-384
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Farbod Mahmoudinobar, Cristiano L. Dias:
GRADE: A code to determine clathrate hydrate structures. 385-391
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Peter H. Jacobse:
MathemaTB: A Mathematica package for tight-binding calculations. 392-408
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Joel Oredsson:
2HDME: Two-Higgs-Doublet Model Evolver. 409-426
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Minjung Kim, Subhasish Mandal, Eric Mikida, Kavitha Chandrasekar, Eric J. Bohm, Nikhil Jain, Qi Li, Raghavendra Kanakagiri, Glenn J. Martyna, Laxmikant V. Kalé, Sohrab Ismail-Beigi:
Scalable GW software for quasiparticle properties using OpenAtom. 427-441
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Daniel Langr, Tomás Dytrych, Jerry P. Draayer, Kristina D. Launey, Pavel Tvrdík:
Efficient algorithm for representations of U(3) in U(N). 442-447
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Peter Athron, Csaba Balázs, Michael Bardsley, Andrew Fowlie, Dylan Harries, Graham White:
Bubbleprofiler: Finding the field profile and action for cosmological phase transitions. 448-468
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Sam Hewitt, Lee Margetts, Alistair J. Revell, Pankaj Pankaj, Francesc Levrero-Florencio:
OpenFPCI: A parallel fluid-structure interaction framework. 469-482

New version announcement

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Reuben D. Budiardja, Christian Y. Cardall:
GenASiSBasics: Object-oriented utilitarian functionality for large-scale physics simulations (Version 3). 483-486
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Andrzej Daniluk:
RHEED intensities from two-dimensional heteroepitaxial nanoscale systems of GaN on AlN(0 0 0 1) and AlN(0 0 0 1¯) surfaces. 487-489

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