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Journal of Biomedical Informatics, Volume 43
Volume 43, Number 1, February 2010
- Georgios Papachristoudis, Sotiris Diplaris
, Pericles A. Mitkas:
SoFoCles: Feature filtering for microarray classification based on Gene Ontology. 1-14 - Yonghong Peng, Zhi Qing Wu, Jianmin Jiang:
A novel feature selection approach for biomedical data classification. 15-23 - Scott L. DuVall
Extending the Fellegi-Sunter probabilistic record linkage method for approximate field comparators. 24-30 - Hai-Tao Zheng, Charles Borchert, Hong-Gee Kim
GOClonto: An ontological clustering approach for conceptualizing PubMed abstracts. 31-40 - Vojtech Huser, Scott P. Narus, Roberto A. Rocha:
Evaluation of a flowchart-based EHR query system: A case study of RetroGuide. 41-50 - Nadezhda Sazonova, Edward Sazonov
Algorithm for haplotype resolution and block partitioning for partial XOR-genotype data. 51-59 - Ashis Jalote-Parmar, Petra Badke-Schaub, Wajid Ali, Eigil Samset:
Cognitive processes as integrative component for developing expert decision-making systems: A workflow centered framework. 60-74 - Nabyl Tejani, Timothy R. Dresselhaus, Matthew B. Weinger:
Development of a hand-held computer platform for real-time behavioral assessment of physicians and nurses. 75-80 - Huawen Liu, Lei Liu, Huijie Zhang:
Ensemble gene selection by grouping for microarray data classification. 81-87 - Zhihao Yang, Hongfei Lin, Yanpeng Li:
BioPPISVMExtractor: A protein-protein interaction extractor for biomedical literature using SVM and rich feature sets. 88-96 - Xiaoli Wang, Daniel Zeng, Holly Seale
Comparing early outbreak detection algorithms based on their optimized parameter values. 97-103 - Elmer V. Bernstam, Jack W. Smith, Todd R. Johnson:
What is biomedical informatics? 104-110 - Yaron Denekamp, Mor Peleg
TiMeDDx - A multi-phase anchor-based diagnostic decision-support model. 111-124 - Ely Edison Matos, Fernanda Campos, Regina Braga
CelOWS: An ontology based framework for the provision of semantic web services related to biological models. 125-136 - Magnus Irestig, Toomas Timpka
Towards responsible system development in health services: A discourse analysis study of design conflict resolution tactics. 137-143 - Thusitha De Silva Mabotuwana, Jim Warren
ChronoMedIt - A computational quality audit framework for better management of patients with chronic conditions. 144-158
- Richard J. Holden, Ben-Tzion Karsh:
The Technology Acceptance Model: Its past and its future in health care. 159-172
Volume 43, Number 2, April 2010
- Catherine Blake
Beyond genes, proteins, and abstracts: Identifying scientific claims from full-text biomedical articles. 173-189 - Xiao Hu, Peng Xu, Shaozhi Wu, Shadnaz Asgari, Marvin Bergsneider:
A data mining framework for time series estimation. 190-199 - Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes
Measuring prediction capacity of individual verbs for the identification of protein interactions. 200-207 - Andigoni Malousi
SpliceIT: A hybrid method for splice signal identification based on probabilistic and biological inference. 208-217 - Jonathan P. DeShazo, Anne M. Turner:
An interactive and user-centered computer system to predict physician's disease judgments in discharge summaries. 218-223 - Adem Karahoca
Information system design for a hospital emergency department: A usability analysis of software prototypes. 224-232 - Yang Liu, Mark Junjie Li
SKM-SNP: SNP markers detection method. 233-239 - Trevor Cohen
Reflective Random Indexing and indirect inference: A scalable method for discovery of implicit connections. 240-256 - Ioannis K. Valavanis, George M. Spyrou, Konstantina S. Nikita
A similarity network approach for the analysis and comparison of protein sequence/structure sets. 257-267 - Philip Brown, Sylvia Halász, Colin R. Goodall, Dennis G. Cochrane, Peter Milano, John R. Allegra:
The ngram chief complaint classifier: A novel method of automatically creating chief complaint classifiers based on international classification of diseases groupings. 268-272 - Linda Peelen, Nicolette de Keizer, Evert de Jonge, Robert-Jan Bosman, Ameen Abu-Hanna
Using hierarchical dynamic Bayesian networks to investigate dynamics of organ failure in patients in the Intensive Care Unit. 273-286 - María Adela Grando
A goal-oriented framework for specifying clinical guidelines and handling medical errors. 287-299 - Connie V. Chan, David R. Kaufman:
A technology selection framework for supporting delivery of patient-oriented health interventions in developing countries. 300-306 - Evanthia E. Tripoliti, Dimitrios I. Fotiadis, Maria Argyropoulou, George Manis:
A six stage approach for the diagnosis of the Alzheimer's disease based on fMRI data. 307-320 - Kevin B. Johnson, Yun-Xian Ho, Cather Marie Cala, Coda L. Davison:
Showing Your Work: Impact of annotating electronic prescriptions with decision support results. 321-325 - Jon D. Duke, Xiaochun Li, Shaun J. Grannis
Data visualization speeds review of potential adverse drug events in patients on multiple medications. 326-331 - Raj Ashar, Sheri Lewis, David L. Blazes, Jean-Paul Chretien:
Applying information and communications technologies to collect health data from remote settings: A systematic assessment of current technologies. 332-341
- Arnon Rosenthal, Peter Mork, Maya Hao Li, Jean Stanford, David Koester, Patti Reynolds:
Cloud computing: A new business paradigm for biomedical information sharing. 342-353
Volume 43, Number 3, June 2010
- Yves A. Lussier
Current methodologies for translational bioinformatics. 355-357
- David P. Chen, Alexander A. Morgan, Atul J. Butte:
Validating pathophysiological models of aging using clinical electronic medical records. 358-364 - Xin Liu, Ya-Pu Zhao:
Simulated pathogenic conformational switch regions matched well with the biochemical findings. 365-375 - Xinan Yang, Yong Huang, Matthew G. Crowson
Kinase inhibition-related adverse events predicted from in vitro kinome and clinical trial data. 376-384 - James L. Chen, Lee T. Sam, Yong Huang, Younghee Lee, Jianrong Li, Yang Liu, H. Rosie Xing, Yves A. Lussier
Protein interaction network underpins concordant prognosis among heterogeneous breast cancer signatures. 385-396 - Rosalia Maglietta
On the reproducibility of results of pathway analysis in genome-wide expression studies of colorectal cancers. 397-406 - Terry H. Shen, Peter Tarczy-Hornoch
Evaluation of probabilistic and logical inference for a SNP annotation system. 407-418 - Alberto Riva
An automated reasoning framework for translational research. 419-427 - Jeffrey Kriseman, Christopher Busick, Szabolcs Szelinger, Valentin Dinu:
BING: Biomedical informatics pipeline for Next Generation Sequencing. 428-434 - Young Soo Song, Hye Won Lee, Yu Rang Park, Do Kyoon Kim, Jaehyun Sim, Hyunseok Peter Kang, Ju Han Kim:
TMA-TAB: A spreadsheet-based document for exchange of tissue microarray data based on the tissue microarray-object model. 435-441 - Elizabeth S. Chen, Indra Neil Sarkar
MeSHing molecular sequences and clinical trials: A feasibility study. 442-450
- Chunhua Weng
Formal representation of eligibility criteria: A literature review. 451-467
Volume 43, Number 4, August 2010
- Gianluca Colombo, Daniele Merico
An ontological modeling approach to cerebrovascular disease studies: The NEUROWEB case. 469-484 - Norman E. Fenton
Comparing risks of alternative medical diagnosis using Bayesian arguments. 485-495 - Christos Argyropoulos
Background adjustment of cDNA microarray images by Maximum Entropy distributions. 496-509 - Nancy C. Baker, Bradley M. Hemminger
Mining connections between chemicals, proteins, and diseases extracted from Medline annotations. 510-519 - Beatriz Pérez
Authoring and verification of clinical guidelines: A model driven approach. 520-536 - Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen
Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis. 537-549 - Wenyuan Li, Min Xu, Xianghong Jasmine Zhou:
Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets. 550-559 - Anindya Bhattacharya, Rajat K. De:
Average correlation clustering algorithm (ACCA) for grouping of co-regulated genes with similar pattern of variation in their expression values. 560-568 - Feng Chen, Yi-Ping Phoebe Chen
Exploring the ncRNA-ncRNA patterns based on bridging rules. 569-577 - Tudor Toma, Robert-Jan Bosman, Arno Siebes, Niels Peek, Ameen Abu-Hanna
Learning predictive models that use pattern discovery - A bootstrap evaluative approach applied in organ functioning sequences. 578-586 - Dina Demner-Fushman, James G. Mork, Sonya E. Shooshan, Alan R. Aronson:
UMLS content views appropriate for NLP processing of the biomedical literature vs. clinical text. 587-594 - Xiaoyan Wang, Herbert S. Chase, Marianthi Markatou, George Hripcsak, Carol Friedman:
Selecting information in electronic health records for knowledge acquisition. 595-601 - Sarada S. Panchanathan, Diana B. Petitti, Douglas B. Fridsma:
The development and validation of a simulation tool for health policy decision making. 602-607 - Chintan Patel, James J. Cimino
A network-theoretic approach for decompositional translation across Open Biological Ontologies. 608-612 - Ivan Stajduhar
Learning Bayesian networks from survival data using weighting censored instances. 613-622 - Dympna O'Sullivan
Automatic indexing and retrieval of encounter-specific evidence for point-of-care support. 623-631 - R. S. Mans, Nick C. Russell, Wil M. P. van der Aalst
Proclets in healthcare. 632-649
- Xuezhong Zhou
Text mining for traditional Chinese medical knowledge discovery: A survey. 650-660
Volume 43, Number 5, October 2010
- Mithra Vankipuram, Kanav Kahol, Alex McLaren, Sethuraman Panchanathan:
A virtual reality simulator for orthopedic basic skills: A design and validation study. 661-668 - Shyam Visweswaran, Derek C. Angus, Margaret Hsieh, Lisa A. Weissfeld, Donald Yealy, Gregory F. Cooper:
Learning patient-specific predictive models from clinical data. 669-685 - Sooyoung Yoo, Jinwook Choi:
On the query reformulation technique for effective MEDLINE document retrieval. 686-693 - Vidya Vasuki, Trevor Cohen:
Reflective random indexing for semi-automatic indexing of the biomedical literature. 694-700 - Ameen Abu-Hanna
PRIM versus CART in subgroup discovery: When patience is harmful. 701-708 - Ronilda Lacson, Erik Pitzer, Jihoon Kim, Pedro A. F. Galante
DSGeo: Software tools for cross-platform analysis of gene expression data in GEO. 709-715 - Nathan C. Hulse, Grant M. Wood
Deriving consumer-facing disease concepts for family health histories using multi-source sampling. 716-724 - Guocai Chen, Jim Warren
Semantic Space models for classification of consumer webpages on metadata attributes. 725-735 - Catalina Martínez-Costa
An approach for the semantic interoperability of ISO EN 13606 and OpenEHR archetypes. 736-746 - Hersh Sagreiya, Russ B. Altman:
The utility of general purpose versus specialty clinical databases for research: Warfarin dose estimation from extracted clinical variables. 747-751 - Alistair Miles
OpenFlyData: An exemplar data web integrating gene expression data on the fruit fly Drosophila melanogaster. 752-761 - Mark Stevenson, Yikun Guo:
Disambiguation of ambiguous biomedical terms using examples generated from the UMLS Metathesaurus. 762-773 - Ljiljana Trtica-Majnaric
Prediction of influenza vaccination outcome by neural networks and logistic regression. 774-781 - Jan Horsky, Kerry McColgan, Justine E. Pang, Andrea J. Melnikas, Jeffrey A. Linder, Jeffrey L. Schnipper, Blackford Middleton
Complementary methods of system usability evaluation: Surveys and observations during software design and development cycles. 782-790 - Jacob Barhak, Deanna J. M. Isaman, Wen Ye, Donghee Lee:
Chronic disease modeling and simulation software. 791-799 - Ghasem Mahdevar
Tag SNP selection via a genetic algorithm. 800-804 - Ann Kristin Rotegaard, Cornelia M. Ruland:
Patient centeredness in terminologies: Coverage of health assets concepts in the International Classification of Nursing Practice. 805-811 - Francisco Azuaje, Yvan Devaux
Transcriptional networks characterize ventricular dysfunction after myocardial infarction: A proof-of-concept investigation. 812-819 - Haiyan Hu:
Mining patterns in disease classification forests. 820-827
- Elmer V. Bernstam
Unintended consequences of health information technology: A need for biomedical informatics. 828-830 - John Fox, David Glasspool, Vivek Patkar, Mark Austin, Liz Black, Matthew South
Delivering clinical decision support services: There is nothing as practical as a good theory. 831-843
- Stefan V. Pantazi:
Unsupervised grammar induction and similarity retrieval in medical language processing using the Deterministic Dynamic Associative Memory (DDAM) model. 844-857
Volume 43, Numbers 5-Supplement-1, October 2010
- Kevin B. Johnson:
Project HealthDesign: Advancing the vision of consumer-clinician-computer collaborations. S1-S2
- Patricia Flatley Brennan, Stephen Downs, Gail R. Casper:
Project HealthDesign: Rethinking the power and potential of personal health records. S3-S5
- Michael A. Hogarth, Kathy Hajopoulos, Meg Young, Neil Cowles, John Churin, Bethany Hornthal, Laura Esserman:
The Communication and Care Plan: A novel approach to patient-centered clinical information systems. S6-S8 - Peter Chira, Lisa Nugent, Kimberly Miller, Tina Park, Sean Donahue, Amit Soni, Diane Nugent, Christy Sandborg:
Living Profiles: Design of a health media platform for teens with special healthcare needs. S9-S12 - George Ferguson, Jill Quinn, Cecilia Horwitz, Mary D. Swift, James F. Allen, Lucian Galescu:
Towards a Personal Health Management Assistant. S13-S16 - Stephanie J. Fonda, Richard J. Kedziora
Evolution of a web-based, prototype Personal Health Application for diabetes self-management. S17-S21 - Katie A. Siek, Stephen E. Ross, Danish Ullah Khan, Leah M. Haverhals
Colorado Care Tablet: The design of an interoperable Personal Health Application to help older adults with multimorbidity manage their medications. S22-S26 - Jason Slagle, Jeffry S. Gordon, Christopher E. Harris, Coda L. Davison, DeMoyne K. Culpepper, Patti Scott, Kevin B. Johnson:
MyMediHealth - Designing a next generation system for child-centered medication management. S27-S31 - Roger Luckmann, Amin Vidal:
Design of a handheld electronic pain, treatment and activity diary. S32-S36 - Lynne T. Harris, James Tufano, Tung Le, Courtney Rees, Ginny A. Lewis, Alison B. Evert
Designing mobile support for glycemic control in patients with diabetes. S37-S40 - Barbara L. Massoudi, Murrey G. Olmsted
A web-based intervention to support increased physical activity among at-risk adults. S41-S45 - Walter V. Sujansky, Samuel A. Faus, Ethan Stone, Patricia Flatley Brennan:
A method to implement fine-grained access control for personal health records through standard relational database queries. S46-S50 - Reid Cushman, A. Michael Froomkin, Anita Cava, Patricia S. Abril
Ethical, legal and social issues for personal health records and applications. S51-S55
Volume 43, Number 6, December 2010
- Vimla L. Patel, Riccardo Bellazzi
Professor Mario Stefanelli (1945-2010). 859-860
- Joris van de Klundert
Measuring clinical pathway adherence. 861-872 - Eithon Cadag, Peter Tarczy-Hornoch
Supporting retrieval of diverse biomedical data using evidence-aware queries. 873-882 - Leila Ahmadian
Facilitating pre-operative assessment guidelines representation using SNOMED CT. 883-890 - Adam Wright
An automated technique for identifying associations between medications, laboratory results and problems. 891-901 - Roxana Dánger, Isabel Segura-Bedmar
A comparison of machine learning techniques for detection of drug target articles. 902-913 - Jonathan S. Schildcrout
An analytical approach to characterize morbidity profile dissimilarity between distinct cohorts using electronic medical records. 914-923 - Songhua Xu, Michael Krauthammer
A new pivoting and iterative text detection algorithm for biomedical images. 924-931 - Jesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman:
Independent component analysis: Mining microarray data for fundamental human gene expression modules. 932-944 - Stefan Wuchty, Alice Zhang, Jennifer Walling, Susie Ahn, Aiguo Li, Martha Quezado, Carl Oberholtzer, Jean-Claude Zenklusen, Howard A. Fine:
Gene pathways and subnetworks distinguish between major glioma subtypes and elucidate potential underlying biology. 945-952 - Shashank Agarwal, Hong Yu:
Detecting hedge cues and their scope in biomedical text with conditional random fields. 953-961 - Yonggang Cao, James J. Cimino
Automatically extracting information needs from complex clinical questions. 962-971 - Mark Stevenson
Disambiguation in the biomedical domain: The role of ambiguity type. 972-981 - Simon Horsburgh
The Equity in Prescription Medicines Use Study: Using community pharmacy databases to study medicines utilisation. 982-987 - Gai Elhanan, Kuo-Chuan Huang, Yehoshua Perl:
Source authenticity in the UMLS - A case study of the Minimal Standard Terminology. 988-997 - Helena F. Deus
Exposing the cancer genome atlas as a SPARQL endpoint. 998-1008 - Adrien Coulet
Using text to build semantic networks for pharmacogenomics. 1009-1019 - Jahiruddin, Muhammad Abulaish
A concept-driven biomedical knowledge extraction and visualization framework for conceptualization of text corpora. 1020-1035 - Tae Youn Kim, Amy Coenen, Nicholas R. Hardiker
A quality improvement model for healthcare terminologies. 1036-1043
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