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Leonid Chindelevitch
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2020 – today
- 2024
- [j19]João Paulo Pereira Zanetti
, Lucas Peres Oliveira
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance. IEEE ACM Trans. Comput. Biol. Bioinform. 21(3): 316-327 (2024) - 2023
- [j18]João Paulo Pereira Zanetti, Lucas Peres Oliveira
Generalizations of the genomic rank distance to indels. Bioinform. 39(3) (2023) - [j17]Romain Derelle, John Lees
fastlin: an ultra-fast program for Mycobacterium tuberculosis complex lineage typing. Bioinform. 39(10) (2023) - [j16]Nafiseh Sedaghat, Tamon Stephen
Speeding Up the Structural Analysis of Metabolic Network Models Using the Fredman-Khachiyan Algorithm B. J. Comput. Biol. 30(6): 678-694 (2023) - [j15]Leonid Chindelevitch
Ten simple rules for the sharing of bacterial genotype - Phenotype data on antimicrobial resistance. PLoS Comput. Biol. 19(6) (2023) - 2022
- [j14]Mehrdad Mansouri, Sahand Khakabimamaghani, Leonid Chindelevitch
Aristotle: stratified causal discovery for omics data. BMC Bioinform. 23(1): 42 (2022) - [i2]Leonid Chindelevitch, Elita Jauneikaite, Nicole E. Wheeler, Kasim Allel, Bede Yaw Ansiri-Asafoakaa, Wireko A. Awuah, Denis C. Bauer, Stephan Beisken, Kara Fan, Gary Grant, Michael Graz, Yara Khalaf, Veranja Liyanapathirana, Carlos Montefusco-Pereira, Lawrence Mugisha
Applying data technologies to combat AMR: current status, challenges, and opportunities on the way forward. CoRR abs/2208.04683 (2022) - 2021
- [j13]Hooman Zabeti, Nick C. Dexter
INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis. Algorithms Mol. Biol. 16(1): 17 (2021) - [c15]Amir Hosein Safari, Nafiseh Sedaghat, Hooman Zabeti, Alpha Forna, Leonid Chindelevitch
Predicting drug resistance in M. tuberculosis using a long-term recurrent convolutional network. BCB 2021: 29:1-29:10 - 2020
- [j12]Maryam Hayati, Leonid Chindelevitch
Computing the distribution of the Robinson-Foulds distance. Comput. Biol. Chem. 87: 107284 (2020) - [c14]Mohsen Katebi, Pedro Feijão, Julius Booth, Mehrdad Mansouri, Sean La, Alex Sweeten, Reza Miraskarshahi, Matthew Nguyen
PathOGiST: A Novel Method for Clustering Pathogen Isolates by Combining Multiple Genotyping Signals. AlCoB 2020: 108-124 - [c13]Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak, Jan Kulveit, Yee Whye Teh, Leonid Chindelevitch, Yarin Gal:
How Robust are the Estimated Effects of Nonpharmaceutical Interventions against COVID-19? NeurIPS 2020 - [c12]Hooman Zabeti, Nick C. Dexter, Amir Hosein Safari, Nafiseh Sedaghat, Maxwell W. Libbrecht, Leonid Chindelevitch
An Interpretable Classification Method for Predicting Drug Resistance in M. Tuberculosis. WABI 2020: 2:1-2:18 - [i1]Mrinank Sharma, Sören Mindermann, Jan Markus Brauner, Gavin Leech, Anna B. Stephenson, Tomas Gavenciak
On the robustness of effectiveness estimation of nonpharmaceutical interventions against COVID-19 transmission. CoRR abs/2007.13454 (2020)
2010 – 2019
- 2019
- [j11]Leonid Chindelevitch
A cubic algorithm for the generalized rank median of three genomes. Algorithms Mol. Biol. 14(1): 16:1-16:16 (2019) - [j10]Sahand Khakabimamaghani, Salem Malikic
Collaborative intra-tumor heterogeneity detection. Bioinform. 35(14): i379-i388 (2019) - [j9]Reza Miraskarshahi, Hooman Zabeti, Tamon Stephen, Leonid Chindelevitch
MCS2: minimal coordinated supports for fast enumeration of minimal cut sets in metabolic networks. Bioinform. 35(14): i615-i623 (2019) - [j8]Guo Liang Gan, Elijah Willie
Deconvoluting the diversity of within-host pathogen strains in a multi-locus sequence typing framework. BMC Bioinform. 20-S(20): 637 (2019) - [c11]João Paulo Pereira Zanetti
Counting Sorting Scenarios and Intermediate Genomes for the Rank Distance. AlCoB 2019: 137-151 - [c10]João Paulo Pereira Zanetti
Generalizations of the Genomic Rank Distance to Indels. AlCoB 2019: 152-164 - 2018
- [j7]Leonid Chindelevitch
On the rank-distance median of 3 permutations. BMC Bioinform. 19-S(6): 43-62 (2018) - [c9]Leonid Chindelevitch
A Cubic Algorithm for the Generalized Rank Median of Three Genomes. RECOMB-CG 2018: 3-27 - [c8]Hooman Zabeti, Tamon Stephen, Bonnie Berger, Leonid Chindelevitch
A Duality-Based Method for Identifying Elemental Balance Violations in Metabolic Network Models. WABI 2018: 1:1-1:13 - [c7]Mehrdad Mansouri, Julian Booth, Margaryta Vityaz, Cédric Chauve, Leonid Chindelevitch
PRINCE: Accurate Approximation of the Copy Number of Tandem Repeats. WABI 2018: 20:1-20:13 - [c6]Nafiseh Sedaghat, Tamon Stephen, Leonid Chindelevitch
Speeding up Dualization in the Fredman-Khachiyan Algorithm B. SEA 2018: 6:1-6:13 - 2017
- [c5]Leonid Chindelevitch
On the Rank-Distance Median of 3 Permutations. RECOMB-CG 2017: 256-276 - 2016
- [j6]Leonid Chindelevitch
ClassTR: Classifying Within-Host Heterogeneity Based on Tandem Repeats with Application to Mycobacterium tuberculosis Infections. PLoS Comput. Biol. 12(2) (2016) - 2013
- [j5]Leonid Chindelevitch
Optimizing a global alignment of protein interaction networks. Bioinform. 29(21): 2765-2773 (2013) - 2012
- [j4]Leonid Chindelevitch
Causal reasoning on biological networks: interpreting transcriptional changes. Bioinform. 28(8): 1114-1121 (2012) - [j3]Leonid Chindelevitch
Assessing statistical significance in causal graphs. BMC Bioinform. 13: 35 (2012) - [j2]Chia-Ling Huang, John Lamb, Leonid Chindelevitch
Correlation set analysis: detecting active regulators in disease populations using prior causal knowledge. BMC Bioinform. 13: 46 (2012) - 2011
- [c4]Leonid Chindelevitch
Metabolic Network Analysis Demystified. RECOMB 2011: 31-33 - [c3]Leonid Chindelevitch
Causal Reasoning on Biological Networks: Interpreting Transcriptional Changes - (Extended Abstract). RECOMB 2011: 34-37 - 2010
- [c2]Leonid Chindelevitch, Chung-Shou Liao, Bonnie Berger:
Local Optimization for Global Alignment of Protein Interaction Networks. Pacific Symposium on Biocomputing 2010: 123-132
2000 – 2009
- 2008
- [c1]Michael Schnall-Levin, Leonid Chindelevitch
Inverting the Viterbi algorithm: an abstract framework for structure design. ICML 2008: 904-911 - 2006
- [j1]Leonid Chindelevitch
On the Inference of Parsimonious Indel Evolutionary Scenarios. J. Bioinform. Comput. Biol. 4(3): 721-744 (2006)
Coauthor Index
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