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Zlatko Trajanoski
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2020 – today
- 2022
- [j28]Dietmar Rieder, Georgios Fotakis
, Markus Ausserhofer, Rene Geyeregger, Wolfgang Paster, Zlatko Trajanoski, Francesca Finotello
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction. Bioinform. 38(4): 1131-1132 (2022) - 2020
- [j27]Georgios Fotakis
NeoFuse: predicting fusion neoantigens from RNA sequencing data. Bioinform. 36(7): 2260-2261 (2020) - [j26]Gregor Sturm, Tamás Szabó
Scirpy: a Scanpy extension for analyzing single-cell T-cell receptor-sequencing data. Bioinform. 36(18): 4817-4818 (2020)
2010 – 2019
- 2017
- [j25]Elias Tappeiner
TIminer: NGS data mining pipeline for cancer immunology and immunotherapy. Bioinform. 33(19): 3140-3141 (2017) - 2016
- [j24]Dietmar Rieder
meRanTK: methylated RNA analysis ToolKit. Bioinform. 32(5): 782-785 (2016) - 2014
- [j23]Stephan Pabinger
A survey of tools for variant analysis of next-generation genome sequencing data. Briefings Bioinform. 15(2): 256-278 (2014) - [j22]Stephan Pabinger
MEMOSys 2.0: an update of the bioinformatics database for genome-scale models and genomic data. Database J. Biol. Databases Curation 2014 (2014) - [j21]Dominik Schweiger, Zlatko Trajanoski, Stephan Pabinger
SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases. BMC Bioinform. 15: 279 (2014) - [j20]Andreas Dander, Matthias Baldauf, Michael Sperk, Stephan Pabinger
Personalized Oncology Suite: integrating next-generation sequencing data and whole-slide bioimages. BMC Bioinform. 15: 306 (2014) - 2013
- [j19]René Snajder
GPViz: dynamic visualization of genomic regions and variants affecting protein domains. Bioinform. 29(17): 2195-2196 (2013) - [j18]Ralf Gallasch, Mirjana Efremova
Mathematical models for translational and clinical oncology. J. Clin. Bioinform. 3: 23 (2013) - 2011
- [j17]Stephan Pabinger
MEMOSys: Bioinformatics platform for genome-scale metabolic models. BMC Syst. Biol. 5: 20 (2011)
2000 – 2009
- 2009
- [j16]Gabriela Bindea, Bernhard Mlecnik, Hubert Hackl
ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks. Bioinform. 25(8): 1091-1093 (2009) - [j15]Stephan Pabinger
QPCR: Application for real-time PCR data management and analysis. BMC Bioinform. 10: 268 (2009) - [j14]Gernot Stocker
iLAP: a workflow-driven software for experimental protocol development, data acquisition and analysis. BMC Bioinform. 10: 390 (2009) - 2007
- [j13]Jürgen Hartler
MASPECTRAS: a platform for management and analysis of proteomics LC-MS/MS data. BMC Bioinform. 8 (2007) - [j12]Gerhard G. Thallinger
TAMEE: data management and analysis for tissue microarrays. BMC Bioinform. 8 (2007) - 2006
- [j11]Johannes Rainer
CARMAweb: comprehensive R- and bioconductor-based web service for microarray data analysis. Nucleic Acids Res. 34(Web-Server-Issue): 498-503 (2006) - 2005
- [j10]J. S. Yu, Stefano Ongarello, R. Fiedler, X. W. Chen, Gianna Toffolo, Claudio Cobelli, Zlatko Trajanoski:
Ovarian cancer identification based on dimensionality reduction for high-throughput mass spectrometry data. Bioinform. 21(10): 2200-2209 (2005) - [j9]Barbara Di Camillo, Fátima Sánchez-Cabo, Gianna Toffolo, Sreekumaran K. Nair, Zlatko Trajanoski, Claudio Cobelli:
A quantization method based on threshold optimization for microarray short time series. BMC Bioinform. 6(S-4) (2005) - [j8]Michael Maurer, Robert Molidor, Alexander Sturn, Jürgen Hartler
MARS: Microarray analysis, retrieval, and storage system. BMC Bioinform. 6: 101 (2005) - [j7]Bernhard Mlecnik, Marcel Scheideler
PathwayExplorer: web service for visualizing high-throughput expression data on biological pathways. Nucleic Acids Res. 33(Web-Server-Issue): 633-637 (2005) - [c1]C. Vogl, Fátima Sánchez-Cabo, Gernot Stocker, Simon J. Hubbard
A fully Bayesian model to cluster gene-expression profiles. ECCB/JBI 2005: 136 - 2004
- [j6]Gernot Stocker
ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster. Bioinform. 20(5): 805-807 (2004) - [j5]Roland Pieler, Fátima Sánchez-Cabo, Hubert Hackl
ArrayNorm: comprehensive normalization and analysis of microarray data. Bioinform. 20(12): 1971-1973 (2004) - 2003
- [j4]Alexander Sturn, Bernhard Mlecnik, Roland Pieler, Johannes Rainer
Client-Server environment for high-performance gene expression data analysis. Bioinform. 19(6): 772-773 (2003) - [j3]Elmar Trost, Hubert Hackl
Java editor for biological pathways. Bioinform. 19(6): 786-787 (2003) - 2002
- [j2]Alexander Sturn, John Quackenbush
Genesis: cluster analysis of microarray data. Bioinform. 18(1): 207-208 (2002) - [j1]Georg Habeler, Klaus Natter, Gerhard G. Thallinger
YPL.db: the Yeast Protein Localization database. Nucleic Acids Res. 30(1): 80-83 (2002)
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