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Jon Pey
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2020 – today
- 2022
- [j13]Asier Antoranz, María Ortiz, Jon Pey:
ELIMINATOR: essentiality analysis using multisystem networks and integer programming. BMC Bioinform. 23(1): 324 (2022)
2010 – 2019
- 2016
- [j12]Luis Tobalina, Jon Pey, Francisco J. Planes:
Direct calculation of minimal cut sets involving a specific reaction knock-out. Bioinform. 32(13): 2001-2007 (2016) - 2015
- [j11]Alberto Rezola, Jon Pey, Luis Tobalina, Ángel Rubio, John E. Beasley, Francisco J. Planes:
Advances in network-based metabolic pathway analysis and gene expression data integration. Briefings Bioinform. 16(2): 265-279 (2015) - [j10]Jon Pey, Juan A. Villar, Luis Tobalina, Alberto Rezola, José Manuel García Carrasco, John E. Beasley, Francisco J. Planes:
TreeEFM: calculating elementary flux modes using linear optimization in a tree-based algorithm. Bioinform. 31(6): 897-904 (2015) - [j9]Luis Tobalina, Rafael Bargiela, Jon Pey, Florian-Alexander Herbst, Iván Lores, David Rojo, Coral Barbas, Ana I. Peláez, Jesús Sánchez, Martin von Bergen, Jana Seifert, Manuel Ferrer, Francisco J. Planes:
Context-specific metabolic network reconstruction of a naphthalene-degrading bacterial community guided by metaproteomic data. Bioinform. 31(11): 1771-1779 (2015) - 2014
- [j8]Jon Pey, Francisco J. Planes, John E. Beasley:
Refining carbon flux paths using atomic trace data. Bioinform. 30(7): 975-980 (2014) - [j7]Jon Pey, Francisco J. Planes:
Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks. Bioinform. 30(15): 2197-2203 (2014) - 2013
- [j6]Ander Muniategui, Jon Pey, Francisco J. Planes, Angel Rubio:
Joint analysis of miRNA and mRNA expression data. Briefings Bioinform. 14(3): 263-278 (2013) - [j5]Alberto Rezola, Jon Pey, Luis F. de Figueiredo, Adam Podhorski, Stefan Schuster, Angel Rubio, Francisco J. Planes:
Selection of human tissue-specific elementary flux modes using gene expression data. Bioinform. 29(16): 2009-2016 (2013) - [j4]Jon Pey, Luis Tobalina, Joaquín Prada J. de Cisneros, Francisco J. Planes:
A network-based approach for predicting key enzymes explaining metabolite abundance alterations in a disease phenotype. BMC Syst. Biol. 7: 62 (2013) - [j3]Jon Pey, Kaspar Valgepea, Angel Rubio, John E. Beasley, Francisco J. Planes:
Integrating gene and protein expression data with genome-scale metabolic networks to infer functional pathways. BMC Syst. Biol. 7: 134 (2013) - 2011
- [j2]Alberto Rezola, Luis F. de Figueiredo, Matthias Brock, Jon Pey, Adam Podhorski, Christoph Wittmann, Stefan Schuster, Alexander Bockmayr, Francisco J. Planes:
Exploring metabolic pathways in genome-scale networks via generating flux modes. Bioinform. 27(4): 534-540 (2011) - [j1]Jon Pey, Constantinos Theodoropoulos, Alberto Rezola, Angel Rubio, Marta Cascante, Francisco J. Planes:
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes. Biosyst. 105(2): 140-146 (2011)
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