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Charlotte Bunne
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2020 – today
- 2024
- [j1]Puck van Gerwen
, Ksenia R. Briling
3DReact: Geometric Deep Learning for Chemical Reactions. J. Chem. Inf. Model. 64(15): 5771-5785 (2024) - [i16]Charlotte Bunne, Yusuf H. Roohani, Yanay Rosen, Ankit Gupta, Xikun Zhang, Marcel Roed, Theo Alexandrov, Mohammed AlQuraishi, Patricia Brennan, Daniel B. Burkhardt, Andrea Califano, Jonah Cool, Abby F. Dernburg, Kirsty Ewing, Emily B. Fox, Matthias Haury, Amy E. Herr, Eric Horvitz, Patrick D. Hsu, Viren Jain, Gregory R. Johnson, Thomas Kalil, David R. Kelley, Shana O. Kelley, Anna Kreshuk, Tim Mitchison, Stephani Otte, Jay Shendure, Nicolas J. Sofroniew, Fabian J. Theis, Christina V. Theodoris, Srigokul Upadhyayula, Marc Valer, Bo Wang, Eric Xing, Serena Yeung-Levy, Marinka Zitnik, Theofanis Karaletsos, Aviv Regev, Emma Lundberg, Jure Leskovec, Stephen R. Quake:
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities. CoRR abs/2409.11654 (2024) - 2023
- [b1]Charlotte Bunne:
Neural Optimal Transport for Dynamical Systems: Methods and Applications in Biomedicine. ETH Zurich, Zürich, Switzerland, 2023 - [c8]Charlotte Bunne, Ya-Ping Hsieh, Marco Cuturi, Andreas Krause:
The Schrödinger Bridge between Gaussian Measures has a Closed Form. AISTATS 2023: 5802-5833 - [c7]Vignesh Ram Somnath, Matteo Pariset
Aligned Diffusion Schrödinger Bridges. UAI 2023: 1985-1995 - [i15]Vignesh Ram Somnath, Matteo Pariset, Ya-Ping Hsieh, María Rodríguez Martínez, Andreas Krause, Charlotte Bunne:
Aligned Diffusion Schrödinger Bridges. CoRR abs/2302.11419 (2023) - [i14]Matteo Pariset, Ya-Ping Hsieh, Charlotte Bunne, Andreas Krause, Valentin De Bortoli:
Unbalanced Diffusion Schrödinger Bridge. CoRR abs/2306.09099 (2023) - [i13]Michael Plainer, Hannes Stärk, Charlotte Bunne, Stephan Günnemann:
Transition Path Sampling with Boltzmann Generator-based MCMC Moves. CoRR abs/2312.05340 (2023) - [i12]Puck van Gerwen, Ksenia R. Briling, Charlotte Bunne, Vignesh Ram Somnath, Rubén Laplaza, Andreas Krause, Clémence Corminboeuf:
EquiReact: An equivariant neural network for chemical reactions. CoRR abs/2312.08307 (2023) - 2022
- [c6]Charlotte Bunne, Laetitia Papaxanthos, Andreas Krause, Marco Cuturi:
Proximal Optimal Transport Modeling of Population Dynamics. AISTATS 2022: 6511-6528 - [c5]Octavian-Eugen Ganea, Xinyuan Huang, Charlotte Bunne, Yatao Bian, Regina Barzilay, Tommi S. Jaakkola, Andreas Krause:
Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking. ICLR 2022 - [c4]Charlotte Bunne, Andreas Krause, Marco Cuturi:
Supervised Training of Conditional Monge Maps. NeurIPS 2022 - [i11]Marco Cuturi, Laetitia Meng-Papaxanthos, Yingtao Tian, Charlotte Bunne, Geoff Davis, Olivier Teboul:
Optimal Transport Tools (OTT): A JAX Toolbox for all things Wasserstein. CoRR abs/2201.12324 (2022) - [i10]Charlotte Bunne, Ya-Ping Hsieh, Marco Cuturi, Andreas Krause:
Recovering Stochastic Dynamics via Gaussian Schrödinger Bridges. CoRR abs/2202.05722 (2022) - [i9]Vignesh Ram Somnath, Charlotte Bunne, Andreas Krause:
Multi-Scale Representation Learning on Proteins. CoRR abs/2204.02337 (2022) - [i8]Mathieu Chevalley, Charlotte Bunne, Andreas Krause, Stefan Bauer:
Invariant Causal Mechanisms through Distribution Matching. CoRR abs/2206.11646 (2022) - [i7]Charlotte Bunne, Andreas Krause, Marco Cuturi:
Supervised Training of Conditional Monge Maps. CoRR abs/2206.14262 (2022) - [i6]Frederike Lübeck, Charlotte Bunne, Gabriele Gut, Jacobo Sarabia del Castillo, Lucas Pelkmans, David Alvarez-Melis:
Neural Unbalanced Optimal Transport via Cycle-Consistent Semi-Couplings. CoRR abs/2209.15621 (2022) - 2021
- [c3]Vignesh Ram Somnath, Charlotte Bunne, Connor W. Coley, Andreas Krause, Regina Barzilay:
Learning Graph Models for Retrosynthesis Prediction. NeurIPS 2021: 9405-9415 - [c2]Vignesh Ram Somnath, Charlotte Bunne, Andreas Krause:
Multi-Scale Representation Learning on Proteins. NeurIPS 2021: 25244-25255 - [i5]Charlotte Bunne, Laetitia Meng-Papaxanthos, Andreas Krause, Marco Cuturi:
JKOnet: Proximal Optimal Transport Modeling of Population Dynamics. CoRR abs/2106.06345 (2021) - [i4]Octavian-Eugen Ganea, Xinyuan Huang, Charlotte Bunne, Yatao Bian, Regina Barzilay, Tommi S. Jaakkola, Andreas Krause:
Independent SE(3)-Equivariant Models for End-to-End Rigid Protein Docking. CoRR abs/2111.07786 (2021) - 2020
- [i3]Vignesh Ram Somnath
Learning Graph Models for Template-Free Retrosynthesis. CoRR abs/2006.07038 (2020)
2010 – 2019
- 2019
- [c1]Charlotte Bunne, David Alvarez-Melis, Andreas Krause, Stefanie Jegelka:
Learning Generative Models across Incomparable Spaces. ICML 2019: 851-861 - [i2]Charlotte Bunne, David Alvarez-Melis, Andreas Krause, Stefanie Jegelka:
Learning Generative Models across Incomparable Spaces. CoRR abs/1905.05461 (2019) - 2018
- [i1]Charlotte Bunne, Lukas Rahmann, Thomas Wolf:
Studying Invariances of Trained Convolutional Neural Networks. CoRR abs/1803.05963 (2018)
Coauthor Index
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