Explainable nucleus classification using Decision Tree Approximation of Learned Embeddings - Mohamed Amgad; Lamees A. Atteya; Hagar Hussein; Kareem Hosny Mohammed; Ehab Hafiz; Maha A. T. Elsebaie; Pooya Mobadersany; David Manthey; David A. Gutman; Habiba Elfandy; Lee A. D. Cooper (Bioinform., 2022)

histolab: A Python library for reproducible Digital Pathology preprocessing with automated testing - Alessia Marcolini; Nicole Bussola; Ernesto Arbitrio; Mohamed Amgad; Giuseppe Jurman; Cesare Furlanello (SoftwareX, 2022)

NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation - Mohamed Amgad; Lamees A. Atteya; Hagar Hussein; Kareem Hosny Mohammed; Ehab Hafiz; Maha A. T. Elsebaie; Ahmed M. Alhusseiny; Mohamed Atef AlMoslemany; Abdelmagid M. Elmatboly; Philip A. Pappalardo; Rokia Adel Sakr; Pooya Mobadersany; et al. (CoRR, 2021)

A Histopathology Study Comparing Contrastive Semi-Supervised and Fully Supervised Learning - Lantian Zhang; Mohamed Amgad; Lee A. D. Cooper (CoRR, 2021)

HistomicsML2.0: Fast interactive machine learning for whole slide imaging data - Sanghoon Lee; Mohamed Amgad; Deepak Roy Chittajallu; Matt McCormick; Brian P. Pollack; Habiba Elfandy; Hagar Hussein; David A. Gutman; Lee A. D. Cooper (CoRR, 2020)

Structured crowdsourcing enables convolutional segmentation of histology images - Mohamed Amgad; Habiba Elfandy; Hagar Hussein; Lamees A. Atteya; Mai A. T. Elsebaie; Lamia S. Abo Elnasr; Rokia Adel Sakr; Hazem S. E. Salem; Ahmed F. Ismail; Anas M. Saad; Joumana Ahmed; Maha A. T. Elsebaie; et al. (Bioinform., 2019)

An Ensemble-based Active Learning for Breast Cancer Classification - Sanghoon Lee; Mohamed Amgad; Mohamed Masoud; Rajasekaran Subramanian; David A. Gutman; Lee Cooper (2019 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2019, San Diego, CA, USA, November 18-21, 2019, 2019)

Joint region and nucleus segmentation for characterization of tumor infiltrating lymphocytes in breast cancer - Mohamed Amgad; Anindya Sarkar; Chukka Srinivas; Rachel Redman; Simrath Ratra; Charles J. Bechert; Benjamin C. Calhoun; Karen Mrazeck; Uday Kurkure; Lee A. D. Cooper; Michael Barnes (Medical Imaging 2019: Digital Pathology, San Diego, California, United States, 16-21 February 2019, 2019)