Explainable nucleus classification using Decision Tree Approximation of Learned Embeddings. - Amgad, Mohamed; Atteya, Lamees A.; Hussein, Hagar; Mohammed, Kareem Hosny; Hafiz, Ehab; Elsebaie, Maha A. T.; Mobadersany, Pooya; Manthey, David; Gutman, David A.; Elfandy, Habiba; Cooper, Lee A. D. (Bioinform., 2022)

histolab: A Python library for reproducible Digital Pathology preprocessing with automated testing. - Marcolini, Alessia; Bussola, Nicole; Arbitrio, Ernesto; Amgad, Mohamed; Jurman, Giuseppe; Furlanello, Cesare (SoftwareX, 2022)

NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation. - Amgad, Mohamed; Atteya, Lamees A.; Hussein, Hagar; Mohammed, Kareem Hosny; Hafiz, Ehab; Elsebaie, Maha A. T.; Alhusseiny, Ahmed M.; AlMoslemany, Mohamed Atef; Elmatboly, Abdelmagid M.; Pappalardo, Philip A.; Sakr, Rokia Adel; Mobadersany, Pooya; et al. (CoRR, 2021)

A Histopathology Study Comparing Contrastive Semi-Supervised and Fully Supervised Learning. - Zhang, Lantian; Amgad, Mohamed; Cooper, Lee A. D. (CoRR, 2021)

HistomicsML2.0: Fast interactive machine learning for whole slide imaging data. - Lee, Sanghoon; Amgad, Mohamed; Chittajallu, Deepak Roy; McCormick, Matt; Pollack, Brian P.; Elfandy, Habiba; Hussein, Hagar; Gutman, David A.; Cooper, Lee A. D. (CoRR, 2020)

Structured crowdsourcing enables convolutional segmentation of histology images. - Amgad, Mohamed; Elfandy, Habiba; Hussein, Hagar; Atteya, Lamees A.; Elsebaie, Mai A. T.; Elnasr, Lamia S. Abo; Sakr, Rokia Adel; Salem, Hazem S. E.; Ismail, Ahmed F.; Saad, Anas M.; Ahmed, Joumana; Elsebaie, Maha A. T.; et al. (Bioinform., 2019)

An Ensemble-based Active Learning for Breast Cancer Classification. - Lee, Sanghoon; Amgad, Mohamed; Masoud, Mohamed; Subramanian, Rajasekaran; Gutman, David A.; Cooper, Lee (2019)

Joint region and nucleus segmentation for characterization of tumor infiltrating lymphocytes in breast cancer. - Amgad, Mohamed; Sarkar, Anindya; Srinivas, Chukka; Redman, Rachel; Ratra, Simrath; Bechert, Charles J.; Calhoun, Benjamin C.; Mrazeck, Karen; Kurkure, Uday; Cooper, Lee A. D.; Barnes, Michael (2019)