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2020 – today

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2024
[j15]
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Petros Liakopoulos, Julien Massonnet, Jonatan Bonjour, Medya Tekes Mizrakli, Simon Graham, Michel A. Cuendet, Amanda H. Seipel, Olivier Michielin, Doron Merkler, Andrew Janowczyk:
HoverFast: an accurate, high-throughput, clinically deployable nuclear segmentation tool for brightfield digital pathology images. J. Open Source Softw. 9(101): 7022 (2024)
[j14]
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  - journals/mia/GrahamVJWSZZYXWRBHLHAJAHAXYBPVSBLLY24
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Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, David R. J. Snead, Shan-E-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
CoNIC Challenge: Pushing the frontiers of nuclear detection, segmentation, classification and counting. Medical Image Anal. 92: 103047 (2024)
[j13]
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  - journals/mia/JahanifarSZGRMR24
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Mostafa Jahanifar, Adam Shephard, Neda Zamanitajeddin, Simon Graham, Shan E Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
Mitosis detection, fast and slow: Robust and efficient detection of mitotic figures. Medical Image Anal. 94: 103132 (2024)
[j12]
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  - journals/titb/JiaoLALTBCMPPKBRLGWKLRVC24
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Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Shenghua Cheng, Jiabo Ma, John Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan-E-Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Xiuli Liu, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi:
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. IEEE J. Biomed. Health Informatics 28(3): 1161-1172 (2024)
[c15]
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  - conf/isbi/ShephardJWDGSKRR24
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Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. ISBI 2024: 1-5
2023
[j11]
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  - journals/mia/GrahamVJRASR23
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Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Shan-E-Ahmed Raza, Fayyaz A. Afsar, David R. J. Snead, Nasir M. Rajpoot:
One model is all you need: Multi-task learning enables simultaneous histology image segmentation and classification. Medical Image Anal. 83: 102685 (2023)
[c14]
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Kesi Xu, Mostafa Jahanifar, Simon Graham, Nasir M. Rajpoot:
Accurate segmentation of nuclear instances using a double-stage neural network. Digital and Computational Pathology 2023
[d13]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version v1.3.2. Zenodo, 2023 [all versions]
[d12]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version v1.3.3. Zenodo, 2023 [all versions]
[d11]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version v1.4.0. Zenodo, 2023 [all versions]
[d10]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version v1.4.1. Zenodo, 2023 [all versions]
[i21]
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  - journals/corr/abs-2301-03418
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Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan E Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot:
Nuclear Segmentation and Classification: On Color & Compression Generalization. CoRR abs/2301.03418 (2023)
[i20]
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  - journals/corr/abs-2301-06304
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Yiping Jiao, Jeroen van der Laak, Shadi Albarqouni, Zhang Li, Tao Tan, Abhir Bhalerao, Jiabo Ma, Jiamei Sun, Johnathon Pocock, Josien P. W. Pluim, Navid Alemi Koohbanani, Raja Muhammad Saad Bashir, Shan E Ahmed Raza, Sibo Liu, Simon Graham, Suzanne C. Wetstein, Syed Ali Khurram, Thomas Watson, Nasir M. Rajpoot, Mitko Veta, Francesco Ciompi:
LYSTO: The Lymphocyte Assessment Hackathon and Benchmark Dataset. CoRR abs/2301.06304 (2023)
[i19]
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  - journals/corr/abs-2303-06274
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Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Martin Weigert, Uwe Schmidt, Wenhua Zhang, Jun Zhang, Sen Yang, Jinxi Xiang, Xiyue Wang, Josef Lorenz Rumberger, Elias Baumann, Peter Hirsch, Lihao Liu, Chenyang Hong, Angelica I. Avilés-Rivero, Ayushi Jain, Heeyoung Ahn, Yiyu Hong, Hussam Azzuni, Min Xu, Mohammad Yaqub, Marie-Claire Blache, Benoît Piégu, Bertrand Vernay, Tim Scherr, Moritz Böhland, Katharina Löffler, Jiachen Li, Weiqin Ying, Chixin Wang, Dagmar Kainmueller, Carola-Bibiane Schönlieb, Shuolin Liu, Dhairya Talsania, Yughender Meda, Prakash Mishra, Muhammad Ridzuan, Oliver Neumann, Marcel P. Schilling, Markus Reischl, Ralf Mikut, Banban Huang, Hsiang-Chin Chien, Ching-Ping Wang, Chia-Yen Lee, Hong-Kun Lin, Zaiyi Liu, Xipeng Pan, Chu Han, Jijun Cheng, Muhammad Dawood, Srijay Deshpande, Raja Muhammad Saad Bashir, Adam Shephard, Pedro Costa, João D. Nunes, Aurélio Campilho, Jaime S. Cardoso, Hrishikesh P. S, Densen Puthussery, Devika R. G, Jiji C V, Ye Zhang, Zijie Fang, Zhifan Lin, Yongbing Zhang, Chunhui Lin, Liukun Zhang, Lijian Mao, Min Wu, Thi Tuong Vi Vo, Soo-Hyung Kim, Taebum Lee, Satoshi Kondo, Satoshi Kasai, Pranay Dumbhare, Vedant Phuse, Yash Dubey, Ankush Jamthikar, Trinh Thi Le Vuong, Jin Tae Kwak, Dorsa Ziaei, Hyun Jung, Tianyi Miao, David R. J. Snead, Shan-E-Ahmed Raza, Fayyaz Minhas, Nasir M. Rajpoot:
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting. CoRR abs/2303.06274 (2023)
[i18]
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  - journals/corr/abs-2311-06185
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Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
An Automated Pipeline for Tumour-Infiltrating Lymphocyte Scoring in Breast Cancer. CoRR abs/2311.06185 (2023)
2022
[j10]
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  - journals/mia/DeshpandeMGR22
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Srijay Deshpande, Fayyaz A. Minhas, Simon Graham, Nasir M. Rajpoot:
SAFRON: Stitching Across the Frontier Network for Generating Colorectal Cancer Histology Images. Medical Image Anal. 77: 102337 (2022)
[j9]
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  - journals/mia/DaHLZZLCLXHYGWC22
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Qian Da, Xiaodi Huang, Zhongyu Li, Yanfei Zuo, Chenbin Zhang, Jingxin Liu, Wen Chen, Jiahui Li, Dou Xu, Zhiqiang Hu, Hongmei Yi, Yan Guo, Zhe Wang, Ling Chen, Li Zhang, Xianying He, Xiaofan Zhang, Ke Mei, Chuang Zhu, Weizeng Lu, Linlin Shen, Jun Shi, Jun Li, Sreehari S, Ganapathy Krishnamurthi, Jiangcheng Yang, Tiancheng Lin, Qingyu Song, Xuechen Liu, Simon Graham, Raja Muhammad Saad Bashir, Canqian Yang, Shaofei Qin, Xinmei Tian, Baocai Yin, Jie Zhao, Dimitris N. Metaxas, Hongsheng Li, Chaofu Wang, Shaoting Zhang:
DigestPath: A benchmark dataset with challenge review for the pathological detection and segmentation of digestive-system. Medical Image Anal. 80: 102485 (2022)
[c13]
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  - conf/eccv/VuongVJGKR22
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Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot:
IMPaSh: A Novel Domain-Shift Resistant Representation for Colorectal Cancer Tissue Classification. ECCV Workshops (3) 2022: 543-555
[c12]
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  - conf/log/MackenzieDGEM22
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Callum Christopher Mackenzie, Muhammad Dawood, Simon Graham, Mark Eastwood, Fayyaz ul Amir Afsar Minhas:
Neural Graph Modelling of Whole Slide Images for Survival Ranking. LoG 2022: 48
[c11]
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  - conf/miccai/VuJGJRMBR22
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Quoc Dang Vu, Robert Jewsbury, Simon Graham, Mostafa Jahanifar, Shan-E-Ahmed Raza, Fayyaz Minhas, Abhir Bhalerao, Nasir M. Rajpoot:
Nuclear Segmentation and Classification: On Color and Compression Generalization. MLMI@MICCAI 2022: 249-258
[d9]
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  - data/10/PocockGVJDHSBBLEMRR22
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.0.1. Zenodo, 2022 [all versions]
[d8]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.1.0. Zenodo, 2022 [all versions]
[d7]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.2.0. Zenodo, 2022 [all versions]
[d6]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.2.0. Zenodo, 2022 [all versions]
[d5]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.2.0. Zenodo, 2022 [all versions]
[d4]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.2.1. Zenodo, 2022 [all versions]
[d3]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version 1.3.0. Zenodo, 2022 [all versions]
[d2]
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox as an end-to-end library for advanced tissue image analytics. Version 1.3.1. Zenodo, 2022 [all versions]
[i17]
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  - journals/corr/abs-2203-00077
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Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Fayyaz A. Minhas, David R. J. Snead, Nasir M. Rajpoot:
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification. CoRR abs/2203.00077 (2022)
[i16]
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  - journals/corr/abs-2206-11943
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Adam J. Shephard, Mostafa Jahanifar, Ruoyu Wang, Muhammad Dawood, Simon Graham, Kastytis Sidlauskas, Syed Ali Khurram, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAger: Tumor-Infiltrating Lymphocyte Scoring in Breast Cancer for the TiGER Challenge. CoRR abs/2206.11943 (2022)
[i15]
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  - journals/corr/abs-2208-11052
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Trinh Thi Le Vuong, Quoc Dang Vu, Mostafa Jahanifar, Simon Graham, Jin Tae Kwak, Nasir M. Rajpoot:
IMPaSh: A Novel Domain-shift Resistant Representation for Colorectal Cancer Tissue Classification. CoRR abs/2208.11052 (2022)
2021
[j8]
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  - journals/tmi/VermaKPKRGVZRRW21
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Ruchika Verma, Neeraj Kumar, Abhijeet Patil, Nikhil Cherian Kurian, Swapnil Rane, Simon Graham, Quoc Dang Vu, Mieke Zwager, Shan-E-Ahmed Raza, Nasir M. Rajpoot, Xiyi Wu, Huai Chen, Yijie Huang, Lisheng Wang, Hyun Jung, G. Thomas Brown, Yanling Liu, Shuolin Liu, Seyed Alireza Fatemi Jahromi, Ali Asghar Khani, Ehsan Montahaei, Mahdieh Soleymani Baghshah, Hamid Behroozi, Pavel Semkin, Alexandr Rassadin, Prasad Dutande, Romil Lodaya, Ujjwal Baid, Bhakti Baheti, Sanjay N. Talbar, Amirreza Mahbod, Rupert Ecker, Isabella Ellinger, Zhipeng Luo, Bin Dong, Zhengyu Xu, Yuehan Yao, Shuai Lv, Ming Feng, Kele Xu, Hasib Zunair, Abdessamad Ben Hamza, Steven M. Smiley, Tang-Kai Yin, Qi-Rui Fang, Shikhar Srivastava, Dwarikanath Mahapatra, Lubomira Trnavska, Hanyun Zhang, Priya Lakshmi Narayanan, Justin Law, Yinyin Yuan, Abhiroop Tejomay, Aditya Mitkari, Dinesh Koka, Vikas Ramachandra, Lata Kini, Amit Sethi:
MoNuSAC2020: A Multi-Organ Nuclei Segmentation and Classification Challenge. IEEE Trans. Medical Imaging 40(12): 3413-3423 (2021)
[c10]
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Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot:
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. ICCVW 2021: 552-561
[c9]
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Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-E-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot:
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. ICCVW 2021: 684-693
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  - data/10/PocockGVJDHSBBLEMRR21
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John Pocock, Simon Graham, Quoc Dang Vu, Mostafa Jahanifar, Srijay Deshpande, Giorgos Hadjigeorghiou, Adam Shephard, Raja Muhammad Saad Bashir, Mohsin Bilal, Wenqi Lu, David B. A. Epstein, Fayyaz Minhas, Nasir M. Rajpoot, Shan E Ahmed Raza:
TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. Version 1.0.0. Zenodo, 2021 [all versions]
[i14]
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  - journals/corr/abs-2106-13689
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Noor ul Wahab, Islam M. Miligy, Katherine Dodd, Harvir Sahota, Michael Toss, Wenqi Lu, Mostafa Jahanifar, Mohsin Bilal, Simon Graham, Young Park, Giorgos Hadjigeorghiou, Abhir Bhalerao, Ayat Lashen, Asmaa Ibrahim, Ayaka Katayama, Henry O. Ebili, Matthew Parkin, Tom Sorell, Shan E Ahmed Raza, Emily Hero, Hesham Eldaly, Yee-Wah Tsang, Kishore Gopalakrishnan, David R. J. Snead, Emad Rakha, Nasir M. Rajpoot, Fayyaz A. Minhas:
Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. CoRR abs/2106.13689 (2021)
[i13]
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  - journals/corr/abs-2108-11195
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Simon Graham, Mostafa Jahanifar, Ayesha Azam, Mohammed Nimir, Yee-Wah Tsang, Katherine Dodd, Emily Hero, Harvir Sahota, Atisha Tank, Ksenija Benes, Noorul Wahab, Fayyaz A. Minhas, Shan-E-Ahmed Raza, Hesham Eldaly, Kishore Gopalakrishnan, David R. J. Snead, Nasir M. Rajpoot:
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification. CoRR abs/2108.11195 (2021)
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Adam J. Shephard, Simon Graham, Raja Muhammad Saad Bashir, Mostafa Jahanifar, Hanya Mahmood, Syed Ali Khurram, Nasir M. Rajpoot:
Simultaneous Nuclear Instance and Layer Segmentation in Oral Epithelial Dysplasia. CoRR abs/2108.13904 (2021)
[i11]
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  - journals/corr/abs-2111-14485
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Simon Graham, Mostafa Jahanifar, Quoc Dang Vu, Giorgos Hadjigeorghiou, Thomas Leech, David R. J. Snead, Shan E Ahmed Raza, Fayyaz A. Minhas, Nasir M. Rajpoot:
CoNIC: Colon Nuclei Identification and Counting Challenge 2022. CoRR abs/2111.14485 (2021)
2020
[b1]
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Simon Graham:
Localisation and symmetry in computational pathology. University of Warwick, Coventry, UK, 2020
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M. M. Fraz, Syed Ali Khurram, Simon Graham, Muhammad Shaban, Mariam Hassan, Asif Loya, Nasir M. Rajpoot:
FABnet: feature attention-based network for simultaneous segmentation of microvessels and nerves in routine histology images of oral cancer. Neural Comput. Appl. 32(14): 9915-9928 (2020)
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Neeraj Kumar, Ruchika Verma, Deepak Anand, Yanning Zhou, Omer Fahri Onder, Efstratios Tsougenis, Hao Chen, Pheng-Ann Heng, Jiahui Li, Zhiqiang Hu, Yunzhi Wang, Navid Alemi Koohbanani, Mostafa Jahanifar, Neda Zamani Tajeddin, Ali Gooya, Nasir M. Rajpoot, Xuhua Ren, Sihang Zhou, Qian Wang, Dinggang Shen, Cheng-Kun Yang, Chi-Hung Weng, Wei-Hsiang Yu, Chao-Yuan Yeh, Shuang Yang, Shuoyu Xu, Pak-Hei Yeung, Peng Sun, Amirreza Mahbod, Gerald Schaefer, Isabella Ellinger, Rupert Ecker, Örjan Smedby, Chunliang Wang, Benjamin Chidester, That-Vinh Ton, Minh-Triet Tran, Jian Ma, Minh N. Do, Simon Graham, Quoc Dang Vu, Jin Tae Kwak, Akshaykumar Gunda, Raviteja Chunduri, Corey Hu, Xiaoyang Zhou, Dariush Lotfi, Reza Safdari, Antanas Kascenas, Alison O'Neil, Dennis Eschweiler, Johannes Stegmaier, Yanping Cui, Baocai Yin, Kailin Chen, Xinmei Tian, Philipp Grüning, Erhardt Barth, Elad Arbel, Itay Remer, Amir Ben-Dor, Ekaterina Sirazitdinova, Matthias Kohl, Stefan Braunewell, Yuexiang Li, Xinpeng Xie, Linlin Shen, Jun Ma, Krishanu Das Baksi, Mohammad Azam Khan, Jaegul Choo, Adrián Colomer, Valery Naranjo, Linmin Pei, Khan M. Iftekharuddin, Kaushiki Roy, Debotosh Bhattacharjee, Aníbal Pedraza, Maria Gloria Bueno, Sabarinathan Devanathan, Saravanan Radhakrishnan, Praveen Koduganty, Zihan Wu, Guanyu Cai, Xiaojie Liu, Yuqin Wang, Amit Sethi:
A Multi-Organ Nucleus Segmentation Challenge. IEEE Trans. Medical Imaging 39(5): 1380-1391 (2020)
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Simon Graham, David B. A. Epstein, Nasir M. Rajpoot:
Dense Steerable Filter CNNs for Exploiting Rotational Symmetry in Histology Images. IEEE Trans. Medical Imaging 39(12): 4124-4136 (2020)
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Wenqi Lu, Simon Graham, Mohsin Bilal, Nasir M. Rajpoot, Fayyaz A. Minhas:
Capturing Cellular Topology in Multi-Gigapixel Pathology Images. CVPR Workshops 2020: 1049-1058
[i10]
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  - journals/corr/abs-2003-10778
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Jevgenij Gamper, Navid Alemi Koohbanani, Simon Graham, Mostafa Jahanifar, Syed Ali Khurram, Ayesha Azam, Katherine Hewitt, Nasir M. Rajpoot:
PanNuke Dataset Extension, Insights and Baselines. CoRR abs/2003.10778 (2020)
[i9]
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Simon Graham, David B. A. Epstein, Nasir M. Rajpoot:
Dense Steerable Filter CNNs for Exploiting Rotational Symmetry in Histology Images. CoRR abs/2004.03037 (2020)
[i8]
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  - journals/corr/abs-2008-04526
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Srijay Deshpande, Fayyaz A. Minhas, Simon Graham, Nasir M. Rajpoot:
SAFRON: Stitching Across the Frontier for Generating Colorectal Cancer Histology Images. CoRR abs/2008.04526 (2020)

2010 – 2019

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2019
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Shan E Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot:
Micro-Net: A unified model for segmentation of various objects in microscopy images. Medical Image Anal. 52: 160-173 (2019)
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Simon Graham, Hao Chen, Jevgenij Gamper, Qi Dou, Pheng-Ann Heng, David R. J. Snead, Yee-Wah Tsang, Nasir M. Rajpoot:
MILD-Net: Minimal information loss dilated network for gland instance segmentation in colon histology images. Medical Image Anal. 52: 199-211 (2019)
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Simon Graham, Quoc Dang Vu, Shan E Ahmed Raza, Ayesha Azam, Yee-Wah Tsang, Jin Tae Kwak, Nasir M. Rajpoot:
Hover-Net: Simultaneous segmentation and classification of nuclei in multi-tissue histology images. Medical Image Anal. 58 (2019)
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Huangjing Lin, Hao Chen, Simon Graham, Qi Dou, Nasir M. Rajpoot, Pheng-Ann Heng:
Fast ScanNet: Fast and Dense Analysis of Multi-Gigapixel Whole-Slide Images for Cancer Metastasis Detection. IEEE Trans. Medical Imaging 38(8): 1948-1958 (2019)
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Simon Graham, David B. A. Epstein, Nasir M. Rajpoot:
Rota-Net: Rotation Equivariant Network for Simultaneous Gland and Lumen Segmentation in Colon Histology Images. ECDP 2019: 109-116
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Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot:
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. ICCV Workshops 2019: 388-398
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Yanning Zhou, Simon Graham, Navid Alemi Koohbanani, Muhammad Shaban, Pheng-Ann Heng, Nasir M. Rajpoot:
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images. CoRR abs/1909.01068 (2019)
2018
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Simon Graham, Nasir M. Rajpoot:
SAMS-NET: Stain-aware multi-scale network for instance-based nuclei segmentation in histology images. ISBI 2018: 590-594
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Saad Ullah Akram, Talha Qaiser, Simon Graham, Juho Kannala, Janne Heikkilä, Nasir M. Rajpoot:
Leveraging Unlabeled Whole-Slide-Images for Mitosis Detection. COMPAY/OMIA@MICCAI 2018: 69-77
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M. M. Fraz, Muhammad Shaban, Simon Graham, Syed Ali Khurram, Nasir M. Rajpoot:
Uncertainty Driven Pooling Network for Microvessel Segmentation in Routine Histology Images. COMPAY/OMIA@MICCAI 2018: 156-164
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Simon Graham, Muhammad Shaban, Talha Qaiser, Syed Ali Khurram, Nasir M. Rajpoot:
Classification of lung cancer histology images using patch-level summary statistics. Digital Pathology 2018: 1058119
[i6]
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  - journals/corr/abs-1804-08145
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Shan-E-Ahmed Raza, Linda Cheung, Muhammad Shaban, Simon Graham, David B. A. Epstein, Stella Pelengaris, Michael Khan, Nasir M. Rajpoot:
Micro-Net: A unified model for segmentation of various objects in microscopy images. CoRR abs/1804.08145 (2018)
[i5]
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  - journals/corr/abs-1806-01963
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Simon Graham, Hao Chen, Qi Dou, Pheng-Ann Heng, Nasir M. Rajpoot:
MILD-Net: Minimal Information Loss Dilated Network for Gland Instance Segmentation in Colon Histology Images. CoRR abs/1806.01963 (2018)
[i4]
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  - journals/corr/abs-1807-08284
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Mitko Veta, Yujing J. Heng, Nikolas Stathonikos, Babak Ehteshami Bejnordi, Francisco Beca, Thomas Wollmann, Karl Rohr, Manan A. Shah, Dayong Wang, Mikaël Rousson, Martin Hedlund, David Tellez, Francesco Ciompi, Erwan Zerhouni, David Lanyi, Matheus Palhares Viana, Vassili Kovalev, Vitali Liauchuk, Hady Ahmady Phoulady, Talha Qaiser, Simon Graham, Nasir M. Rajpoot, Erik Sjöblom, Jesper Molin, Kyunghyun Paeng, Sangheum Hwang, Sunggyun Park, Zhipeng Jia, Eric I-Chao Chang, Yan Xu, Andrew H. Beck, Paul J. van Diest, Josien P. W. Pluim:
Predicting breast tumor proliferation from whole-slide images: the TUPAC16 challenge. CoRR abs/1807.08284 (2018)
[i3]
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  - journals/corr/abs-1807-11677
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Saad Ullah Akram, Talha Qaiser, Simon Graham, Juho Kannala, Janne Heikkilä, Nasir M. Rajpoot:
Leveraging Unlabeled Whole-Slide-Images for Mitosis Detection. CoRR abs/1807.11677 (2018)
[i2]
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  - journals/corr/abs-1810-13230
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Quoc Dang Vu, Simon Graham, Minh Nguyen Nhat To, Muhammad Shaban, Talha Qaiser, Navid Alemi Koohbanani, Syed Ali Khurram, Tahsin M. Kurç, Keyvan Farahani, Tianhao Zhao, Rajarsi R. Gupta, Jin Tae Kwak, Nasir M. Rajpoot, Joel H. Saltz:
Methods for Segmentation and Classification of Digital Microscopy Tissue Images. CoRR abs/1810.13230 (2018)
[i1]
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  - journals/corr/abs-1812-06499
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Simon Graham, Quoc Dang Vu, Shan E Ahmed Raza, Jin Tae Kwak, Nasir M. Rajpoot:
XY Network for Nuclear Segmentation in Multi-Tissue Histology Images. CoRR abs/1812.06499 (2018)

2000 – 2009

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2001
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Simon Graham:
Mobilizing a graduate school. SIGUCCS 2001: 235-236

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