Dockformer: A transformer-based molecular docking paradigm for large-scale virtual screening. - Yang, Zhangfan; Ji, Junkai; He, Shan; Li, Jianqiang; He, Tiantian; Bai, Ruibin; Zhu, Zexuan; Ong, Yew Soon (CoRR, 2024)

A novel molecular docking program based on a multi-swarm competitive algorithm. - Zhou, Jin; Yang, Zhangfan; He, Ying; Ji, Junkai; Lin, Qiuzhen; Li, Jianqiang (Swarm Evol. Comput., 2023)

AutoDock Koto: A Gradient Boosting Differential Evolution for Molecular Docking. - Ji, Junkai; Zhou, Jin; Yang, Zhangfan; Lin, Qiuzhen; Coello, Carlos A. Coello (IEEE Trans. Evol. Comput., 2023)

Adopting Autodock Koto for Virtual Screening of COVID-19. - Yang, Zhangfan; Cao, Kun; Ji, Junkai; Zhu, Zexuan; Li, Jianqiang (2023)