default search action
Tero Aittokallio
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
showing all ?? records
2020 – today
- 2024
- [j58]Aleksandr Ianevski
, Aleksandr Kushnir, Kristen Nader
RepurposeDrugs: an interactive web-portal and predictive platform for repurposing mono- and combination therapies. Briefings Bioinform. 25(4) (2024) - 2023
- [j57]Potdar Swapnil
Breeze 2.0: an interactive web-tool for visual analysis and comparison of drug response data. Nucleic Acids Res. 51(W1): 57-61 (2023) - [j56]Anni S. Halkola, Kaisa Joki
OSCAR: Optimal subset cardinality regression using the L0-pseudonorm with applications to prognostic modelling of prostate cancer. PLoS Comput. Biol. 19(3) (2023) - 2022
- [j55]Vandana Ravindran
Discovery of host-directed modulators of virus infection by probing the SARS-CoV-2-host protein-protein interaction network. Briefings Bioinform. 23(6) (2022) - [j54]Petr Smirnov, Ian Smith
Evaluation of statistical approaches for association testing in noisy drug screening data. BMC Bioinform. 23(1): 188 (2022) - [j53]Aleksandr Ianevski
SynergyFinder 3.0: an interactive analysis and consensus interpretation of multi-drug synergies across multiple samples. Nucleic Acids Res. 50(W1): 739-743 (2022) - 2021
- [j52]Liye He
Network-guided identification of cancer-selective combinatorial therapies in ovarian cancer. Briefings Bioinform. 22(6) (2021) - [j51]Tianduanyi Wang, Sándor Szedmák
Modeling drug combination effects via latent tensor reconstruction. Bioinform. 37(Supplement): 93-101 (2021) - [j50]Chen He
Characterizing the Quality of Insight by Interactions: A Case Study. IEEE Trans. Vis. Comput. Graph. 27(8): 3410-3424 (2021) - 2020
- [j49]ZiaurRehman Tanoli
Interactive visual analysis of drug-target interaction networks using Drug Target Profiler, with applications to precision medicine and drug repurposing. Briefings Bioinform. 21(1): 211-220 (2020) - [j48]Aleksandr Ianevski, Liye He, Tero Aittokallio, Jing Tang
SynergyFinder: a web application for analyzing drug combination dose-response matrix data. Bioinform. 36(8): 2645 (2020) - [j47]Potdar Swapnil
Breeze: an integrated quality control and data analysis application for high-throughput drug screening. Bioinform. 36(11): 3602-3604 (2020) - [j46]Mika Murtojärvi, Anni S. Halkola, Antti Airola
Cost-effective survival prediction for patients with advanced prostate cancer using clinical trial and real-world hospital registry datasets. Int. J. Medical Informatics 133 (2020) - [j45]Aleksandr Ianevski
SynergyFinder 2.0: visual analytics of multi-drug combination synergies. Nucleic Acids Res. 48(Webserver-Issue): W488-W493 (2020) - [j44]Aleksandr Ianevski
SynToxProfiler: An interactive analysis of drug combination synergy, toxicity and efficacy. PLoS Comput. Biol. 16(2) (2020) - [j43]Otto Pulkkinen
Multiobjective optimization identifies cancer-selective combination therapies. PLoS Comput. Biol. 16(12) (2020) - [i3]Chen He, Luana Micallef, Liye He, Gopal Peddinti, Tero Aittokallio, Giulio Jacucci:
Characterizing the Quality of Insight by Interactions: A Case Study. CoRR abs/2010.05723 (2020)
2010 – 2019
- 2019
- [j42]Aleksandr Ianevski
Prediction of drug combination effects with a minimal set of experiments. Nat. Mach. Intell. 1(12): 568-577 (2019) - 2018
- [j41]ZiaurRehman Tanoli
Drug Target Commons 2.0: a community platform for systematic analysis of drug-target interaction profiles. Database J. Biol. Databases Curation 2018: bay083 (2018) - [j40]Mehreen Ali
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach. Bioinform. 34(8): 1353-1362 (2018) - [j39]Anna Cichonska
Learning with multiple pairwise kernels for drug bioactivity prediction. Bioinform. 34(13): i509-i518 (2018) - [j38]Teemu D. Laajala
ePCR: an R-package for survival and time-to-event prediction in advanced prostate cancer, applied to real-world patient cohorts. Bioinform. 34(22): 3957-3959 (2018) - 2017
- [j37]Muhammad Ammad-ud-din, Suleiman A. Khan, Krister Wennerberg
Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression. Bioinform. 33(14): i359-i368 (2017) - [j36]Aleksandr Ianevski
SynergyFinder: a web application for analyzing drug combination dose-response matrix data. Bioinform. 33(15): 2413-2415 (2017) - [j35]Chen He
MediSyn: uncertainty-aware visualization of multiple biomedical datasets to support drug treatment selection. BMC Bioinform. 18(S-10): 393:1-393:12 (2017) - [j34]Balaguru Ravikumar
C-SPADE: a web-tool for interactive analysis and visualization of drug screening experiments through compound-specific bioactivity dendrograms. Nucleic Acids Res. 45(Webserver-Issue): W495-W500 (2017) - [j33]Anna Cichonska
Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors. PLoS Comput. Biol. 13(8) (2017) - 2016
- [j32]Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani
Drug response prediction by inferring pathway-response associations with kernelized Bayesian matrix factorization. Bioinform. 32(17): 455-463 (2016) - [i2]Muhammad Ammad-ud-din, Suleiman A. Khan, Disha Malani, Astrid Murumägi, Olli-P. Kallioniemi, Tero Aittokallio, Samuel Kaski:
Drug response prediction by inferring pathway-response associations with Kernelized Bayesian Matrix Factorization. CoRR abs/1606.03623 (2016) - 2015
- [j31]Tapio Pahikkala
Toward more realistic drug-target interaction predictions. Briefings Bioinform. 16(2): 325-337 (2015) - [j30]Liye He
TIMMA-R: an R package for predicting synergistic multi-targeted drug combinations in cancer cell lines or patient-derived samples. Bioinform. 31(11): 1866-1868 (2015) - [j29]John-Patrick Mpindi, Potdar Swapnil
Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data. Bioinform. 31(23): 3815-3821 (2015) - 2014
- [j28]Jing Tang
Making Sense of Large-Scale Kinase Inhibitor Bioactivity Data Sets: A Comparative and Integrative Analysis. J. Chem. Inf. Model. 54(3): 735-743 (2014) - [c5]Tapio Pahikkala
A Two-Step Learning Approach for Solving Full and Almost Full Cold Start Problems in Dyadic Prediction. ECML/PKDD (2) 2014: 517-532 - [i1]Tapio Pahikkala, Michiel Stock, Antti Airola, Tero Aittokallio, Bernard De Baets, Willem Waegeman:
A two-step learning approach for solving full and almost full cold start problems in dyadic prediction. CoRR abs/1405.4423 (2014) - 2013
- [j27]Sebastian Okser, Tapio Pahikkala
Genetic variants and their interactions in disease risk prediction - machine learning and network perspectives. BioData Min. 6: 5 (2013) - [j26]Jing Tang
Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j25]Tapio Pahikkala
Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations. Algorithms Mol. Biol. 7: 11 (2012) - [j24]Johannes Tuikkala, Heidi Vähämaa, Pekka Salmela, Olli Nevalainen, Tero Aittokallio
A multilevel layout algorithm for visualizing physical and genetic interaction networks, with emphasis on their modular organization. BioData Min. 5: 2 (2012) - [j23]Marja A. Heiskanen
Mining high-throughput screens for cancer drug targets - lessons from yeast chemical-genomic profiling and synthetic lethality. WIREs Data Mining Knowl. Discov. 2(3): 263-272 (2012) - [c4]Sebastian Okser, Antti Airola
Parallel Feature Selection for Regularized Least-Squares. PARA 2012: 280-294 - 2011
- [j22]Rolf Lindén, Ville-Pekka Eronen, Tero Aittokallio
Quantitative maps of genetic interactions in yeast - Comparative evaluation and integrative analysis. BMC Syst. Biol. 5: 45 (2011) - [j21]Leo Lahti
Probabilistic Analysis of Probe Reliability in Differential Gene Expression Studies with Short Oligonucleotide Arrays. IEEE ACM Trans. Comput. Biol. Bioinform. 8(1): 217-225 (2011) - [c3]Sebastian Okser, Tapio Pahikkala
Fast and parallelized greedy forward selection of genetic variants in Genome-wide association studies. GENSiPS 2011: 214-217 - 2010
- [j20]Tero Aittokallio
Dealing with missing values in large-scale studies: microarray data imputation and beyond. Briefings Bioinform. 11(2): 253-264 (2010)
2000 – 2009
- 2009
- [j19]Laura Elo
Optimized detection of differential expression in global profiling experiments: case studies in clinical transcriptomic and quantitative proteomic datasets. Briefings Bioinform. 10(5): 547-555 (2009) - [j18]Mathieu Clément-Ziza
Genoscape: a Cytoscape plug-in to automate the retrieval and integration of gene expression data and molecular networks. Bioinform. 25(19): 2617-2618 (2009) - 2008
- [j17]Arho Virkki, Olli Polo, Tarja Saaresranta, Anne Laapotti-Salo, Mats Gyllenberg
Overnight features of transcutaneous carbon dioxide measurement as predictors of metabolic status. Artif. Intell. Medicine 42(1): 55-65 (2008) - [j16]Virpi Ahola, Tero Aittokallio
Model-based prediction of sequence alignment quality. Bioinform. 24(19): 2165-2171 (2008) - [j15]Johannes Tuikkala, Laura Elo
Missing value imputation improves clustering and interpretation of gene expression microarray data. BMC Bioinform. 9 (2008) - [j14]Laura Elo
Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies. IEEE ACM Trans. Comput. Biol. Bioinform. 5(3): 423-431 (2008) - 2007
- [j13]Olivier Garcia, Cosmin Saveanu
GOlorize: a Cytoscape plug-in for network visualization with Gene Ontology-based layout and coloring. Bioinform. 23(3): 394-396 (2007) - [j12]Laura Elo
Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. Bioinform. 23(16): 2096-2103 (2007) - [j11]Tero Aittokallio
Inspiratory flow shape clustering: An automated method to monitor upper airway performance during sleep. Comput. Methods Programs Biomed. 85(1): 8-18 (2007) - 2006
- [j10]Tero Aittokallio
Graph-based methods for analysing networks in cell biology. Briefings Bioinform. 7(3): 243-255 (2006) - [j9]Jussi Salmi
Quality classification of tandem mass spectrometry data. Bioinform. 22(4): 400-406 (2006) - [j8]Johannes Tuikkala, Laura Elo
Improving missing value estimation in microarray data with gene ontology. Bioinform. 22(5): 566-572 (2006) - [j7]Virpi Ahola, Tero Aittokallio
A statistical score for assessing the quality of multiple sequence alignments. BMC Bioinform. 7: 484 (2006) - [j6]Laura Elo
Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments. J. Integr. Bioinform. 3(2) (2006) - 2005
- [c2]Marius C. Codrea, Tero Aittokallio, Mika Keränen, Esa Tyystjärvi, Olli Nevalainen:
On the Robustness of Fluorescence Fingerprinting of Plants. Artificial Intelligence and Applications 2005: 400-405 - 2003
- [j5]Virpi Ahola, Tero Aittokallio
Efficient estimation of emission probabilities in profile hidden Markov models. Bioinform. 19(18): 2359-2368 (2003) - [j4]Tero Aittokallio, Markus Kurki, Olli Nevalainen, Tuomas Nikula, Anne West, Riitta Lahesmaa:
Computational Strategies for Analyzing Data in Gene Expression Microarray Experiments. J. Bioinform. Comput. Biol. 1(3): 541-586 (2003) - [j3]Marius C. Codrea, Tero Aittokallio
Feature learning with a genetic algorithm for fluorescence fingerprinting of plant species. Pattern Recognit. Lett. 24(15): 2663-2673 (2003) - [c1]Marius C. Codrea, Tero Aittokallio
Genetic Feature Learning Algorithm for Fluorescence Fingerprinting of Plants. Artificial Evolution 2003: 371-383 - 2000
- [j2]Tero Aittokallio
Detection of high-frequency respiratory movements during sleep. Comput. Methods Programs Biomed. 61(3): 171-185 (2000)
1990 – 1999
- 1999
- [j1]Tero Aittokallio
Classification of Nasal Inspiratory Flow Shapes by Attributed Finite Automata. Comput. Biomed. Res. 32(1): 34-55 (1999)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-10-07 22:20 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by: