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Shigehiko Kanaya
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2020 – today
- 2024
- [c36]Md. Shakhaout Hossain, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
No-Reference Blurred Image Detection from Colonoscopy Videos Using Walsh-Hadamard Transform and Kolmogorov Smirnov Test. IST 2024: 1-6 - [i7]Sota Kudo, Naoaki Ono, Shigehiko Kanaya, Ming Huang:
Flexible Variational Information Bottleneck: Achieving Diverse Compression with a Single Training. CoRR abs/2402.01238 (2024) - 2023
- [j33]Zheng Chen
, Ziwei Yang
Learning vector quantized representation for cancer subtypes identification. Comput. Methods Programs Biomed. 236: 107543 (2023) - [c35]Ahmad Kamal Nasution, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
Investigating Potential Natural Antibiotics Plants Based on Unani Formula Using Supervised Network Analysis and Machine Learning Approach. BIBM 2023: 3111-3117 - [c34]Zihang Wang, Guangxian Zhu, Haohui Jia, Kenta T. Suzuki, Dafang Zhao
Utilizing Contrastive Predictive Coding for the Detection of Epilepsy in EEG Data. GCCE 2023: 346-347 - [i6]Daiki Koge, Naoaki Ono, Shigehiko Kanaya:
Variational Autoencoding Molecular Graphs with Denoising Diffusion Probabilistic Model. CoRR abs/2307.00623 (2023) - [i5]Daiki Koge, Naoaki Ono, Shigehiko Kanaya:
Pre-training of Molecular GNNs as Conditional Boltzmann Generator. CoRR abs/2312.13110 (2023) - 2022
- [j32]Tetsushi Tanaka, André Freire Cruz, Naoaki Ono, Shigehiko Kanaya:
Clustering analysis of soil microbial community at global scale. Int. J. Bioinform. Res. Appl. 18(3): 219-233 (2022) - [c33]Ahmad Kamal Nasution, Sony Hartono Wijaya
Prediction of Potential Natural Antibiotics based on Jamu Formula Using Machine Learning Approach. BIBE 2022: 204-209 - [c32]Ziwei Yang
Hierarchical Categorical Generative Modeling for Multi-omics Cancer Subtyping. BIBM 2022: 1350-1355 - [c31]Ziwei Yang
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data. EMBC 2022: 1113-1116 - [c30]Mahfujul Islam Rumman
Feature Extraction and Unsupervised Clustering of Histopathological Images of Pancreatic Cancer Using Information Maximization. GCCE 2022: 117-120 - [c29]Guangxian Zhu, Huijia Wang, Ming Huang, Md. Altaf-Ul-Amin, Naoaki Ono, Shigehiko Kanaya:
Straightforward Clustering and Identification of Morphological-Level Pancreatic Carcinoma. GCCE 2022: 162-163 - [c28]Guang Shi, Zheng Chen, Ming Huang, Renyuan Zhang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya:
Algorithm Cocktail Approach for Predicting Body Constitution and Bias Recovery. LifeTech 2022: 112-113 - [c27]Sota Kudo, Zheng Chen, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang:
Deep Learning-Based Sleep Staging with Acceleration and Heart Rate Data of a Consumer Wearable Device. LifeTech 2022: 305-307 - [c26]Yongxin Zhang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang:
Reconciling of the distances in physical space and latent feature space for complex activity modeling. LifeTech 2022: 524-526 - [c25]Guangxian Zhu, Huijia Wang, Yirong Kan, Zheng Chen, Ming Huang, Md. Altaf-Ul-Amin, Naoaki Ono, Shigehiko Kanaya, Renyuan Zhang, Yasuhiko Nakashima:
A Stochastic Coding Method of EEG Signals for Sleep Stage Classification. SOCC 2022: 1-6 - [i4]Ziwei Yang, Lingwei Zhu, Zheng Chen, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya:
Cancer Subtyping via Embedded Unsupervised Learning on Transcriptomics Data. CoRR abs/2204.02278 (2022) - [i3]Zheng Chen, Ziwei Yang, Ming Huang, Toshiyo Tamura, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya:
Enhancement on Model Interpretability and Sleep Stage Scoring Performance with A Novel Pipeline Based on Deep Neural Network. CoRR abs/2204.03173 (2022) - [i2]Zheng Chen, Ziwei Yang, Lingwei Zhu, Guang Shi, Kun Yue, Takashi Matsubara, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
Cancer Subtyping by Improved Transcriptomic Features Using Vector Quantized Variational Autoencoder. CoRR abs/2207.09783 (2022) - 2021
- [j31]Shaikh Farhad Hossain, Ming Huang
Development of a biomarker database toward performing disease classification and finding disease interrelations. Database J. Biol. Databases Curation 2021 (2021) - [j30]Zheng Chen
The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals. Comput. Methods Programs Biomed. 205: 106102 (2021) - [j29]Yongxin Zhang, Zheng Chen, Haoyu Tian, Koshiro Kido, Naoaki Ono, Wei Chen, Toshiyo Tamura, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
A Real-Time Portable IoT System for Telework Tracking. Frontiers Digit. Health 3: 643042 (2021) - [j28]Márcio Freire Cruz, Naoaki Ono, Ming Huang
Kinematics approach with neural networks for early detection of sepsis (KANNEDS). BMC Medical Informatics Decis. Mak. 21(1): 163 (2021) - [j27]Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
DPClusSBO: An integrated software for clustering of simple and bipartite graphs. SoftwareX 16: 100821 (2021) - [c24]Zheng Chen, Ziwei Yang
An End-to-End Sleep Staging Simulator Based on Mixed Deep Neural Networks. BIBM 2021: 848-853 - [c23]Pei Gao, Zheng Chen, Dong Wang, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya:
An Integrated Multi-Omics Approach for AMR Phenotype Prediction of Gut Microbiota. BIBM 2021: 2211-2216 - [c22]Ziwei Yang
Exploring Feasibility of Truth-Involved Automatic Sleep Staging Combined with Transformer. BIBM 2021: 2920-2923 - [c21]Zheng Chen, Pei Gao, Ming Huang, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya:
Feasibility Analysis of Symbolic Representation for Single-Channel EEG-Based Sleep Stages. EMBC 2021: 5928-5931 - [c20]Pei Gao, Zheng Chen, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
An Approach to Construct and Validate TCM Dataset Effective against Bacterial Pneumonia. LifeTech 2021: 102-103 - [c19]Guang Shi, Zheng Chen, Shigehiko Kanaya, Md. Altaf-Ul-Amin, Naoaki Ono, Ming Huang:
Prediction of Body Constitutions through Life-Style for Health Guidance. LifeTech 2021: 106-107 - 2020
- [j26]Mohammad Bozlul Karim
BiClusO: A Novel Biclustering Approach and Its Application to Species-VOC Relational Data. IEEE ACM Trans. Comput. Biol. Bioinform. 17(6): 1955-1965 (2020) - [c18]Zheng Chen, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang:
iVAE: An Improved Deep Learning Structure for EEG Signal Characterization and Reconstruction. BIBM 2020: 1909-1913
2010 – 2019
- 2019
- [j25]Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin
Implementation of BiClusO and its comparison with other biclustering algorithms. Appl. Netw. Sci. 4(1): 79:1-79:15 (2019) - [j24]Ryohei Eguchi, Naoaki Ono
Classification of alkaloids according to the starting substances of their biosynthetic pathways using graph convolutional neural networks. BMC Bioinform. 20(1): 380:1-380:13 (2019) - [j23]Koshiro Kido, Toshiyo Tamura
A Novel CNN-Based Framework for Classification of Signal Quality and Sleep Position from a Capacitive ECG Measurement. Sensors 19(7): 1731 (2019) - [c17]Shaikh Farhad Hossain, Ming Huang, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
Inter Disease Relations Based on Human Biomarkers by Network Analysis. BIBE 2019: 103-108 - [c16]Jieying Hu, Ming Huang, Naoaki Ono, Ye Chen-Izu
Cardiotoxicity Prediction Based on Integreted hERG Database with Molecular Convolution Model. BIBM 2019: 1500-1503 - [c15]Koshiro Kido, Naoaki Ono, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Ming Huang
The Feasibility of Arrhythmias Detection from A Capacitive ECG Measurement Using Convolutional Neural Network. EMBC 2019: 3494-3497 - [r1]Md. Altaf-Ul-Amin, Shigehiko Kanaya, Zeti-Azura Mohamed-Hussein
Investigating Metabolic Pathways and Networks. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 489-503 - 2018
- [j22]Nozomu Sakurai
UC2 search: using unique connectivity of uncharged compounds for metabolite annotation by database searching in mass spectrometry-based metabolomics. Bioinform. 34(4): 698-700 (2018) - [j21]Ryohei Eguchi, Mohammad Bozlul Karim, Pingzhao Hu
An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease. BMC Bioinform. 19(1): 264:1-264:12 (2018) - [j20]Victor Andrew A. Antonio
Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks. Int. J. Comput. Assist. Radiol. Surg. 13(12): 1905-1913 (2018) - [c14]Shaikh Farhad Hossain, Sony Hartono Wijaya
Prediction of Plant-Disease Relations Based on Unani Formulas by Network Analysis. BIBE 2018: 348-351 - [c13]Konosuke Asanou, Naoaki Ono, Chika Iwamoto, Kenoki Ohuchida, Koji Shindo, Shigehiko Kanaya:
Feature extraction and Cluster analysis of Pancreatic Pathological Image Based on Unsupervised Convolutional Neural Network. BIBM 2018: 2738-2740 - [c12]Mohammad Bozlul Karim, Shigehiko Kanaya, Md. Altaf-Ul-Amin:
Comparison of BiClusO with Five Different Biclustering Algorithms Using Biological and Synthetic Data. COMPLEX NETWORKS (2) 2018: 575-585 - [c11]Hiroyuki Kinoshita, Hiroshi Mannoji, Keita Saku, Jumpei Mano, Tadayoshi Miyamoto
Power Spectral Analysis of Short-Term Blood Pressure Recordings for Assessing Daily Variations of Blood Pressure in Human. EMBC 2018: 1-4 - 2017
- [j19]Ming Huang
A Wearable Thermometry for Core Body Temperature Measurement and Its Experimental Verification. IEEE J. Biomed. Health Informatics 21(3): 708-714 (2017) - [j18]Zunyi Tang, Toshiyo Tamura
A Chair-Based Unobtrusive Cuffless Blood Pressure Monitoring System Based on Pulse Arrival Time. IEEE J. Biomed. Health Informatics 21(5): 1194-1205 (2017) - 2016
- [j17]Sony Hartono Wijaya
Finding an appropriate equation to measure similarity between binary vectors: case studies on Indonesian and Japanese herbal medicines. BMC Bioinform. 17: 520:1-520:19 (2016) - [j16]Nelson Kibinge
Integrated pathway-based transcription regulation network mining and visualization based on gene expression profiles. J. Biomed. Informatics 61: 194-202 (2016) - [j15]Ming Huang
Structural Optimization of a Wearable Deep Body Thermometer: From Theoretical Simulation to Experimental Verification. J. Sensors 2016: 4828093:1-4828093:7 (2016) - [c10]Ming Huang
Wearable deep body thermometers and their uses in continuous monitoring for daily healthcare. EMBC 2016: 177-180 - 2015
- [c9]Ming Huang
Evaluation of a noninvasive deep body thermometer in measurement of specific positions. EMBC 2015: 4395-4398 - 2014
- [j14]Kansuporn Sriyudthsak, Yuji Sawada, Yukako Chiba
A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network. BMC Syst. Biol. 8(S-5): S4 (2014) - [c8]Ming Huang, Toshiyo Tamura
Geometrical Improvement of a Noninvasive Core Temperature Thermometer based on Numeric Modeling and Experiment Validation. BIODEVICES 2014: 23-27 - [c7]Ming Huang
Characterization of ultradian and circadian rhythms of core body temperature based on wavelet analysis. EMBC 2014: 4220-4223 - [i1]Kozo Nishida
KEGGscape: a Cytoscape app for pathway data integration. F1000Research 3: 144 (2014) - 2013
- [j13]Nozomu Sakurai, Takeshi Ara
An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values. Bioinform. 29(2): 290-291 (2013) - 2012
- [j12]Shingo Kikugawa, Kensaku Nishikata, Katsuhiko Murakami, Yoshiharu Sato, Mami Suzuki, Md. Altaf-Ul-Amin, Shigehiko Kanaya, Tadashi Imanishi
PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from H-Invitational protein-protein interactions integrative dataset. BMC Syst. Biol. 6(S-2): S7 (2012) - 2011
- [j11]Hiroki Takahashi, Takuya Morimoto, Naotake Ogasawara, Shigehiko Kanaya:
AMDORAP: Non-targeted metabolic profiling based on high-resolution LC-MS. BMC Bioinform. 12: 259 (2011) - [j10]Onuma Chumsakul
Genome-wide binding profiles of the Bacillus subtilis transition state regulator AbrB and its homolog Abh reveals their interactive role in transcriptional regulation. Nucleic Acids Res. 39(2): 414-428 (2011) - [j9]Takashi Abe, Toshimichi Ikemura, Junichi Sugahara, Akio Kanai
tRNADB-CE 2011: tRNA gene database curated manually by experts. Nucleic Acids Res. 39(Database-Issue): 210-213 (2011) - 2010
- [c6]Farit Mochamad Afendi, Latifah K. Darusman, Aki Hirai, Md. Altaf-Ul-Amin, Hiroki Takahashi, Kensuke Nakamura, Shigehiko Kanaya:
System Biology Approach for Elucidating the Relationship Between Indonesian Herbal Plants and the Efficacy of Jamu. ICDM Workshops 2010: 661-668
2000 – 2009
- 2009
- [j8]Takashi Abe, Toshimichi Ikemura, Yasuo Ohara, Hiroshi Uehara, Makoto Kinouchi, Shigehiko Kanaya, Yuko Yamada, Akira Muto, Hachiro Inokuchi:
tRNADB-CE: tRNA gene database curated manually by experts. Nucleic Acids Res. 37(Database-Issue): 163-168 (2009) - [c5]Masanori Arita, Kazuhiro Suwa, Miwa Yoshimoto, Aki Hirai, Shigehiko Kanaya:
Ontology Checking and Integration of Crude-Drug and Kampo Information. BMEI 2009: 1-4 - [c4]Hisayuki Horai, Masanori Arita, Yuya Ojima, Yoshito Nihei, Shigehiko Kanaya, Takeshi Nishioka:
Traceable Analysis of Multiple-Stage Mass Spectra through Precursor-Product Annotations. GCB 2009: 173-178 - [c3]Takashi Abe, Yuta Hamano, Shigehiko Kanaya, Ken-nosuke Wada, Toshimichi Ikemura:
A Large-Scale Genomics Studies Conducted with Batch-Learning SOM Utilizing High-Performance Supercomputers. IWANN (1) 2009: 829-836 - [c2]Takashi Abe, Shigehiko Kanaya, Toshimichi Ikemura:
Batch-Learning Self-Organizing Map for Predicting Functions of Poorly-Characterized Proteins Massively Accumulated. WSOM 2009: 1-9 - 2007
- [j7]Ryoko Morioka, Shigehiko Kanaya, Masami Y. Hirai
Predicting state transitions in the transcriptome and metabolome using a linear dynamical system model. BMC Bioinform. 8 (2007) - [j6]Hijiri Maeno, Md. Altaf-Ul-Amin, Yoko Shinbo, Ken Kurokawa, Naotake Ogasawara, Shigehiko Kanaya:
Elucidating Conservation of Genes in Multiple Genomes Based on Graphs Configured by Bidirectional Best-Hit Relationships. Inf. Media Technol. 2(1): 68-78 (2007) - [j5]Hisashi Tuji, Md. Altaf-Ul-Amin, Masanori Arita, Hirokazu Nishio, Yoko Shinbo, Ken Kurokawa, Shigehiko Kanaya:
Comparison of Protein Complexes Predicted from PPI Networks by DPClus and Newman Clustering Algorithms. Inf. Media Technol. 2(1): 98-108 (2007) - 2006
- [j4]Md. Altaf-Ul-Amin, Yoko Shinbo, Kenji Mihara, Ken Kurokawa, Shigehiko Kanaya:
Development and implementation of an algorithm for detection of protein complexes in large interaction networks. BMC Bioinform. 7: 207 (2006) - 2005
- [j3]Kinya Okada, Shigehiko Kanaya, Kiyoshi Asai:
Accurate extraction of functional associations between proteins based on common interaction partners and common domains. Bioinform. 21(9): 2043-2048 (2005) - [c1]Md. Altaf-Ul-Amin, Toshihiro Koma, Ken Kurokawa, Shigehiko Kanaya:
Prediction of Protein Functions Based on Protein-Protein Interaction Networks: A Min-Cut Approach. ICDE Workshops 2005: 1156
1990 – 1999
- 1996
- [j2]Shigehiko Kanaya, Yoshihiro Kudo, Yasukazu Nakamura
Detection of genes in Escherichia coli sequences determined by genome projects and prediction of protein production levels, based on multivariate diversity in codon usage. Comput. Appl. Biosci. 12(3): 213-225 (1996) - [j1]Yasukazu Nakamura
Condon usage tabulated from the international DNA sequence databases. Nucleic Acids Res. 24(1): 214-215 (1996)
Coauthor Index
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last updated on 2024-12-22 19:59 CET by the dblp team
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