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A. Keith Dunker
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Journal Articles
- 2022
- [j23]Shehab S. Ahmed
, Zaara T. Rifat
Characterization of intrinsically disordered regions in proteins informed by human genetic diversity. PLoS Comput. Biol. 18(3) (2022) - 2021
- [j22]Bi Zhao, Akila Katuwawala, Christopher J. Oldfield, A. Keith Dunker, Eshel Faraggi, Jörg Gsponer, Andrzej Kloczkowski, Nawar Malhis, Milot Mirdita
DescribePROT: database of amino acid-level protein structure and function predictions. Nucleic Acids Res. 49(Database-Issue): D298-D308 (2021) - 2020
- [j21]András Hatos
DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res. 48(Database-Issue): D269-D276 (2020) - 2019
- [j20]Eshel Faraggi
Entropy, Fluctuations, and Disordered Proteins. Entropy 21(8): 764 (2019) - 2017
- [j19]Damiano Piovesan
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45(Database-Issue): D219-D227 (2017) - 2015
- [j18]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu, Li Shen
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 16: 241:1-241:2 (2015) - 2014
- [j17]Jack Y. Yang, A. Keith Dunker, Jun S. Liu
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinform. 15(S-17): I1 (2014) - [j16]William Yang, Kenji Yoshigoe, Xiang Qin, Jun S. Liu
Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinform. 15(S-17): S2 (2014) - [j15]Fei Huang, Christopher J. Oldfield, Bin Xue, Wei-Lun Hsu, Jingwei Meng, Xiaowen Liu
Improving protein order-disorder classification using charge-hydropathy plots. BMC Bioinform. 15(S-17): S4 (2014) - [j14]Mihaly Varadi
pE-DB: a database of structural ensembles of intrinsically disordered and of unfolded proteins. Nucleic Acids Res. 42(Database-Issue): 326-335 (2014) - 2013
- [j13]Matt E. Oates
D2P2: database of disordered protein predictions. Nucleic Acids Res. 41(Database-Issue): 508-516 (2013) - 2012
- [j12]Fatemeh Miri Disfani, Wei-Lun Hsu, Marcin J. Mizianty, Christopher J. Oldfield, Bin Xue, A. Keith Dunker, Vladimir N. Uversky, Lukasz A. Kurgan
MoRFpred, a computational tool for sequence-based prediction and characterization of short disorder-to-order transitioning binding regions in proteins. Bioinform. 28(12): 75-83 (2012) - 2011
- [j11]Marcin J. Mizianty, Tuo Zhang, Bin Xue, Yaoqi Zhou
In-silico prediction of disorder content using hybrid sequence representation. BMC Bioinform. 12: 245 (2011) - 2010
- [j10]Bin Xue, Robert W. Williams, Christopher J. Oldfield, A. Keith Dunker, Vladimir N. Uversky:
Archaic chaos: intrinsically disordered proteins in Archaea. BMC Syst. Biol. 4(S-1): S1 (2010) - 2008
- [j9]Ágnes Tóth-Petróczy, Christopher J. Oldfield, István Simon
Malleable Machines in Transcription Regulation: The Mediator Complex. PLoS Comput. Biol. 4(12) (2008) - 2007
- [j8]Vladimir Vacic
Composition Profiler: a tool for discovery and visualization of amino acid composition differences. BMC Bioinform. 8 (2007) - [j7]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Exploring alternative knowledge representations for protein secondary-structure prediction. Int. J. Data Min. Bioinform. 1(3): 286-313 (2007) - [j6]Megan Sickmeier, Justin A. Hamilton, Tanguy LeGall, Vladimir Vacic
DisProt: the Database of Disordered Proteins. Nucleic Acids Res. 35(Database-Issue): 786-793 (2007) - 2006
- [j5]Kang Peng, Predrag Radivojac, Slobodan Vucetic, A. Keith Dunker, Zoran Obradovic:
Length-dependent prediction of protein intrinsic disorder. BMC Bioinform. 7: 208 (2006) - 2005
- [j4]Slobodan Vucetic, Zoran Obradovic, Vladimir Vacic
DisProt: a database of protein disorder. Bioinform. 21(1): 137-140 (2005) - [j3]Kang Peng, Slobodan Vucetic, Predrag Radivojac, Celeste J. Brown, A. Keith Dunker, Zoran Obradovic:
Optimizing Long Intrinsic Disorder Predictors with Protein Evolutionary Information. J. Bioinform. Comput. Biol. 3(1): 35-60 (2005) - 2004
- [j2]Predrag Radivojac, Nitesh V. Chawla
Classification and knowledge discovery in protein databases. J. Biomed. Informatics 37(4): 224-239 (2004) - 2000
- [j1]Pedro Romero, Zoran Obradovic, A. Keith Dunker:
Intelligent Data Analysis for Protein Disorder Prediction. Artif. Intell. Rev. 14(6): 447-484 (2000)
Conference and Workshop Papers
- 2021
- [c31]Gil Alterovitz, Wei-Lun Alterovitz, Gail H. Cassell, Lixin Zhang, A. Keith Dunker:
AI for infectious disease modelling and therapeutics. PSB 2021 - [c30]Gerard Kian-Meng Goh, A. Keith Dunker, James A. Foster, Vladimir N. Uversky:
Feasibility of the vaccine development for SARS-CoV-2 and other viruses using the shell disorder analysis. PSB 2021 - 2020
- [c29]Lukasz A. Kurgan, Predrag Radivojac, Joel L. Sussman, A. Keith Dunker:
Session Introduction. PSB 2020: 149-158 - [c28]Wei-Lun Alterovitz, Eshel Faraggi, Christopher J. Oldfield, Jingwei Meng, Bin Xue, Fei Huang, Pedro Romero, Andrzej Kloczkowski, Vladimir N. Uversky, A. Keith Dunker:
Many-to-One Binding by Intrinsically Disordered Protein Regions. PSB 2020: 159-170 - 2018
- [c27]Jianhong Zhou, Christopher J. Oldfield, Fei Huang, Wenying Yan, Bairong Shen, A. Keith Dunker:
Identification of intrinsic disorder in complexes from Protein Data Bank. ICCABS 2018: 1 - 2012
- [c26]Jianhan Chen, Jianlin Cheng, A. Keith Dunker:
Session introduction. Pacific Symposium on Biocomputing 2012: 67-69 - [c25]Wei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Intrinsic Protein Disorder and Protein-Protein Interactions. Pacific Symposium on Biocomputing 2012: 116-127 - [c24]Fei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker:
Subclassifying Disordered Proteins by the CH-CDF Plot Method. Pacific Symposium on Biocomputing 2012: 128-139 - 2009
- [c23]Jianjiong Gao
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants. BICoB 2009: 18-29 - [c22]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Protein sequence alignment and structural disorder: a substitution matrix for an extended alphabet. KDD Workshop on Statistical and Relational Learning in Bioinformatics 2009: 27-31 - 2007
- [c21]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: Predictions and Applications. BIBE 2007: 1 - [c20]Vladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker:
Intrinsically Disordered Proteins in Human Diseases. BIBE 2007: 12 - [c19]A. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky:
Intrinsically Disordered Proteins: An Update. BIBE 2007: 49-58 - [c18]A. Keith Dunker:
Protein Intrinsic Disorder, Cell Signaling, Drug Discovery, and Alternative Splicing. BIOCOMP 2007: 471-472 - [c17]Christopher J. Oldfield, Jingwei Meng, Jack Y. Yang, Vladimir N. Uversky, A. Keith Dunker:
Intrinsic Disorder in Protein-Protein Interaction Networks: Case Studies of Complexes Involving p53 and 14-3-3. BIOCOMP 2007: 553-566 - 2005
- [c16]Kenneth Daily, Predrag Radivojac, A. Keith Dunker:
Intrinsic Disorder and Protein modifications: Building an SVM Predictor for Methylation. CIBCB 2005: 475-481 - [c15]Uros Midic, A. Keith Dunker, Zoran Obradovic:
Improving Protein Secondary-Structure Prediction by Predicting Ends of Secondary-Structure Segments. CIBCB 2005: 490-497 - [c14]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2005 - 2004
- [c13]Predrag Radivojac, Zoran Obradovic, A. Keith Dunker, Slobodan Vucetic:
Feature Selection Filters Based on the Permutation Test. ECML 2004: 334-346 - [c12]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2004 - 2003
- [c11]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2003 - [c10]Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker:
Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions. Pacific Symposium on Biocomputing 2003: 216-227 - [c9]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Special Paper - Introduction. Pacific Symposium on Biocomputing 2003: 636-637 - 2002
- [c8]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Preface. Pacific Symposium on Biocomputing 2002 - [c7]Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker:
Improving Sequence Alignments For Intrinsically Disordered Proteins. Pacific Symposium on Biocomputing 2002: 589-600 - 2001
- [c6]Clay Bracken, Malin M. Young, A. Keith Dunker:
Disorder and Flexibility in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing 2001: 64-66 - [c5]R. M. Williams, Zoran Obradovic, V. Mathura, W. Braun, E. C. Garner, J. Young, S. Takayama, Celeste J. Brown, A. Keith Dunker:
The Protein Non-Folding Problem: Amino Acid Determinants of Intrinsic Order and Disorder. Pacific Symposium on Biocomputing 2001: 89-100 - 1999
- [c4]C. Kissinger, A. Keith Dunker, Eugene I. Shakhnovich:
Disorder in Protein Structure and Function - Session Introduction. Pacific Symposium on Biocomputing 1999: 517-519 - 1997
- [c3]Pedro Romero, Zoran Obradovic, C. Kissinger, J. E. Villafranca, A. Keith Dunker:
Identifying disordered regions in proteins from amino acid sequence. ICNN 1997: 90-95 - 1994
- [c2]R. T. Miller, Richard J. Douthart, A. Keith Dunker:
Identifying Repeated Structural Elements in Folded Proteins. HICSS (5) 1994: 235-244 - [c1]A. Keith Dunker, Richard H. Lathrop:
Protein Structure Prediction: Introductios. HICSS (5) 1994: 295
Editorship
- 2020
- [e21]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Tiffany Murray, Teri E. Klein:
Biocomputing 2021: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2021. WorldScientific 2020, ISBN 9789811232695 [contents] - 2019
- [e20]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2019. 2019 [contents] - 2018
- [e19]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island of Hawaii, Hawaii, USA, January 3-7, 2018. 2018 [contents] - 2017
- [e18]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Marylyn D. Ritchie, Teri E. Klein:
Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017. 2017 [contents] - 2016
- [e17]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2016. 2016 [contents] - 2015
- [e16]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2015: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 4-8, 2015. 2015 [contents] - 2014
- [e15]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein, Marylyn D. Ritchie:
Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2014. 2014 [contents] - 2013
- [e14]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2013: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2013. World Scientific Publishing 2013, ISBN 978-1-62748-016-1 [contents] - 2012
- [e13]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012. World Scientific Publishing 2012, ISBN 978-1-61839-811-6 [contents] - 2011
- [e12]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2011: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 3-7 January 2011. World Scientific Publishing 2011, ISBN 978-981-4335-04-1 [contents] - 2010
- [e11]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2010: Proceedings of the Pacific Symposium, Kamuela, Hawaii, USA, 4-8 January 2010. World Scientific Publishing 2010, ISBN 978-981-4295-29-1 [contents] - 2009
- [e10]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 5-9 January 2009. 2009, ISBN 978-981-283-692-2 [contents] - 2008
- [e9]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2008, Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, 4-8 January 2008. World Scientific 2008, ISBN 978-981-277-608-2 [contents] - 2007
- [e8]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany Murray, Teri E. Klein:
Biocomputing 2007, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2007. World Scientific 2007, ISBN 981-270-417-5 [contents] - 2006
- [e7]Russ B. Altman, Tiffany Murray, Teri E. Klein, A. Keith Dunker, Lawrence Hunter:
Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii, USA, 3-7 January 2006. World Scientific 2006, ISBN 981-256-463-2 [contents] - 2005
- [e6]Russ B. Altman, Tiffany A. Jung, Teri E. Klein, A. Keith Dunker, Lawrence Hunter:
Biocomputing 2005, Proceedings of the Pacific Symposium, Hawaii, USA, 4-8 January 2005. World Scientific 2005, ISBN 981-256-046-7 [contents] - 2004
- [e5]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Tiffany A. Jung, Teri E. Klein:
Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA, 6-10 January 2004. World Scientific 2004, ISBN 981-238-598-3 [contents] - 2003
- [e4]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 8th Pacific Symposium on Biocomputing, PSB 2003, Lihue, Hawaii, USA, January 3-7, 2003. 2003 [contents] - 2002
- [e3]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 7th Pacific Symposium on Biocomputing, PSB 2002, Lihue, Hawaii, USA, January 3-7, 2002. 2002 [contents] - 2001
- [e2]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 6th Pacific Symposium on Biocomputing, PSB 2001, Hawaii, USA, January 3-7, 2001. 2001 [contents] - 1999
- [e1]Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein:
Proceedings of the 4th Pacific Symposium on Biocomputing, PSB 1999, The Orchid at Mauna Lani, Big Island of Hawaii, USA, January 4-9, 1999. 1999 [contents]
Coauthor Index
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