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Christos Kozanitis

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Books and Theses

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2013
[b1]
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Christos Kozanitis:
Compressing and Querrying the Human Genome. University of California, San Diego, USA, 2013

Journal Articles

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2018
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Yannis Sfakianakis, Christos Kozanitis, Christos Kozyrakis, Angelos Bilas:
QuMan: Profile-based Improvement of Cluster Utilization. ACM Trans. Archit. Code Optim. 15(3): 27:1-27:25 (2018)
2016
[j4]
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Christos Kozanitis, David A. Patterson:
GenAp: a distributed SQL interface for genomic data. BMC Bioinform. 17: 63 (2016)
2014
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Christos Kozanitis, Andrew Heiberg, George Varghese, Vineet Bafna:
Using Genome Query Language to uncover genetic variation. Bioinform. 30(1): 1-8 (2014)
2013
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Vineet Bafna, Alin Deutsch, Andrew Heiberg, Christos Kozanitis, Lucila Ohno-Machado, George Varghese:
Abstractions for genomics. Commun. ACM 56(1): 83-93 (2013)
2011
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Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese:
Compressing Genomic Sequence Fragments Using SlimGene. J. Comput. Biol. 18(3): 401-413 (2011)

Conference and Workshop Papers

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2023
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Iacovos G. Kolokasis, Giannos Evdorou, Shoaib Akram, Christos Kozanitis, Anastasios Papagiannis, Foivos S. Zakkak, Polyvios Pratikakis, Angelos Bilas:
TeraHeap: Reducing Memory Pressure in Managed Big Data Frameworks. ASPLOS (3) 2023: 694-709
2022
[c14]
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Yannis Sfakianakis, Manolis Marazakis, Christos Kozanitis, Angelos Bilas:
LatEst: Vertical elasticity for millisecond serverless execution. CCGRID 2022: 879-885
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Achilleas Tzenetopoulos, Dimosthenis Masouros, Konstantina Koliogeorgi, Sotirios Xydis, Dimitrios Soudris, Antony Chazapis, Christos Kozanitis, Angelos Bilas, Christian Pinto, Huy-Nam Nguyen, Stelios Louloudakis, Georgios Gardikis, George Vamvakas, Michelle Aubrun, Christi Symeonidou, Vassilis Spitadakis, Konstantinos F. Xylogiannopoulos, Bernhard Peischl, Tahir Emre Kalayci, Alexander Stocker, Jean-Thomas Acquaviva:
EVOLVE: Towards Converging Big-Data, High-Performance and Cloud-Computing Worlds. DATE 2022: 975-980
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George Zervas, Antony Chazapis, Yannis Sfakianakis, Christos Kozanitis, Angelos Bilas:
Virtual Clusters: Isolated, Containerized HPC Environments in Kubernetes. ISC Workshops 2022: 347-357
2021
[c11]
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Antony Chazapis, Jean-Thomas Acquaviva, Angelos Bilas, Georgios Gardikis, Christos Kozanitis, Stelios Louloudakis, Huy-Nam Nguyen, Christian Pinto, Arno Scharl, Dimitrios Soudris:
EVOLVE: HPC and cloud enhanced testbed for extracting value from large-scale diverse data. CF 2021: 200-205
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Antony Chazapis, Christian Pinto, Yiannis Gkoufas, Christos Kozanitis, Angelos Bilas:
A unified storage layer for supporting distributed workflows in kubernetes. CHEOPS@EuroSys 2021: 1:1-1:9
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Antony Chazapis, Efstratios Politis, Giorgos Kalaentzis, Christos Kozanitis, Angelos Bilas:
H3: An Application-Level, Low-Overhead Object Store. ISC Workshops 2021: 174-188
2019
[c8]
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George Pitsis, Grigorios Tsagkatakis, Christos Kozanitis, Ioannis Kalomoiris, Aggelos Ioannou, Apostolos Dollas, Manolis G. H. Katevenis, Panagiotis Tsakalides:
Efficient Convolutional Neural Network Weight Compression for Space Data Classification on Multi-fpga Platforms. ICASSP 2019: 3917-3921
2018
[c7]
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Christoforos Kachris, Dimitrios Soudris, Stelios Mavridis, Manolis Pavlidakis, Christi Symeonidou, Christos Kozanitis, Angelos Bilas, Damon Fenacci, Sharatchandra Varma Bogaraju, Hans Vandierendonck, Dimitrios S. Nikolopoulos:
The VINEYARD integrated framework for hardware accelerators in the cloud. SAMOS 2018: 236-243
2017
[c6]
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Stelios Mavridis, Emmanouil Pavlidakis, Ioannis Stamoulias, Christos Kozanitis, Nikolaos Chrysos, Christoforos Kachris, Dimitrios Soudris, Angelos Bilas:
VineTalk: Simplifying software access and sharing of FPGAs in datacenters. FPL 2017: 1-4
2010
[c5]
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Christos Kozanitis, John Huber, Sushil Singh, George Varghese:
Leaping Multiple Headers in a Single Bound: Wire-Speed Parsing Using the Kangaroo System. INFOCOM 2010: 830-838
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Christos Kozanitis, Christopher T. Saunders, Semyon Kruglyak, Vineet Bafna, George Varghese:
Compressing Genomic Sequence Fragments Using SlimGene. RECOMB 2010: 310-324
2006
[c3]
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Euripides Sotiriades, Christos Kozanitis, Apostolos Dollas:
FPGA based architecture for DNA sequence comparison and database search. IPDPS 2006
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Euripides Sotiriades, Christos Kozanitis, Apostolos Dollas:
Some initial results on hardware BLAST acceleration with a reconfigurable architecture. IPDPS 2006
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Euripides Sotiriades, Christos Kozanitis, Grigorios Chrysos, Apostolos Dollas:
Rapid Phototyping of a System-on-a-Chip for the BLAST Algorithm Implementation. IEEE International Workshop on Rapid System Prototyping 2006: 223-229

Informal and Other Publications

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2021
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Iacovos G. Kolokasis, Giannos Evdorou, Anastasios Papagiannis, Foivos S. Zakkak, Christos Kozanitis, Shoaib Akram, Polyvios Pratikakis, Angelos Bilas:
Freeing Compute Caches from Serialization and Garbage Collection in Managed Big Data Analytics. CoRR abs/2111.10589 (2021)

Coauthor Index

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