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Shinichi Morishita
Person information
- affiliation: University of Tokyo, Japan
- affiliation (1985 - 1997): IBM Tokyo Research Laboratory, Japan
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2020 – today
- 2023
- [j38]Bansho Masutani
, Riki Kawahara
Decomposing mosaic tandem repeats accurately from long reads. Bioinform. 39(4) (2023) - 2021
- [j37]Shinichi Morishita
Finding long tandem repeats in long noisy reads. Bioinform. 37(5): 612-621 (2021) - [j36]Bansho Masutani
Investigating the mitochondrial genomic landscape of Arabidopsis thaliana by long-read sequencing. PLoS Comput. Biol. 17(1) (2021) - 2020
- [j35]Ryo Nakabayashi
HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C. Bioinform. 36(13): 3966-3974 (2020)
2010 – 2019
- 2019
- [j34]Bansho Masutani, Shinichi Morishita
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35(4): 584-592 (2019) - [j33]Bansho Masutani, Shinichi Morishita
A framework and an algorithm to detect low-abundance DNA by a handy sequencer and a palm-sized computer. Bioinform. 35(8): 1443 (2019) - 2016
- [j32]Yuta Suzuki
AgIn: measuring the landscape of CpG methylation of individual repetitive elements. Bioinform. 32(19): 2911-2919 (2016) - [c32]Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita
Preface. BIBM 2016: 1-2 - [e4]Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016. IEEE Computer Society 2016, ISBN 978-1-5090-1611-2 [contents] - 2015
- [j31]Kazuki Ichikawa
A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states. BMC Genom. 16(S-2): S8 (2015) - 2014
- [j30]Koichiro Doi, Taku Monjo, Pham H. Hoang, Jun Yoshimura, Hideaki Yurino, Jun Mitsui, Hiroyuki Ishiura, Yuji Takahashi, Yaeko Ichikawa, Jun Goto, Shoji Tsuji, Shinichi Morishita
Rapid detection of expanded short tandem repeats in personal genomics using hybrid sequencing. Bioinform. 30(6): 815-822 (2014) - [j29]Kazuki Ichikawa
A Simple but Powerful Heuristic Methodfor Accelerating $k$ -Means Clusteringof Large-Scale Data in Life Science. IEEE ACM Trans. Comput. Biol. Bioinform. 11(4): 681-692 (2014) - 2011
- [j28]Hongyan Wu, Taro L. Saito, Shinichi Morishita:
Accelerating Path-free XML Queries in RDBMS. Inf. Media Technol. 6(1): 52-63 (2011) - [c31]Shinichi Morishita
Invited: Searching massive epigenome data for evolutionarily conserved sequence motifs. ICCABS 2011: 7 - [c30]Atsushi Sasaki, Shinichi Morishita
Poster: Robust estimation of DNA methylation with local regression. ICCABS 2011: 259 - [e3]Fang-Xiang Wu, Mohammed Javeed Zaki, Shinichi Morishita, Yi Pan, Stephen Wong, Anastasia Christianson, Xiaohua Hu:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2011, Atlanta, GA, USA, November 12-15, , 2011. IEEE Computer Society 2011, ISBN 978-1-4577-1799-4 [contents]
2000 – 2009
- 2009
- [j27]Taro L. Saito, Jun Yoshimura, Shin Sasaki, Budrul Ahsan, Atsushi Sasaki, Reginaldo Kuroshu, Shinichi Morishita
UTGB toolkit for personalized genome browsers. Bioinform. 25(15): 1856-1861 (2009) - [j26]Yuki Naito
siDirect 2.0: updated software for designing functional siRNA with reduced seed-dependent off-target effect. BMC Bioinform. 10: 392 (2009) - [j25]Budrul Ahsan, Taro L. Saito, Shin-ichi Hashimoto, Keigo Muramatsu, Manabu Tsuda, Atsushi Sasaki, Kouji Matsushima, Toshiro Aigaki, Shinichi Morishita:
MachiBase: a Drosophila melanogaster 5'-end mRNA transcription database. Nucleic Acids Res. 37(Database-Issue): 49-53 (2009) - 2008
- [j24]Budrul Ahsan, Daisuke Kobayashi, Tomoyuki Yamada, Masahiro Kasahara
UTGB/medaka: genomic resource database for medaka biology. Nucleic Acids Res. 36(Database-Issue): 747-752 (2008) - [c29]Taro L. Saito, Shinichi Morishita
Relational-style XML query. SIGMOD Conference 2008: 303-314 - 2007
- [c28]Taro L. Saito, Shinichi Morishita:
Efficient Integration of Structure Indexes of XML. DASFAA 2007: 781-792 - 2006
- [j23]Tomoyuki Yamada, Haruhiko Soma, Shinichi Morishita
PrimerStation: a highly specific multiplex genomic PCR primer design server for the human genome. Nucleic Acids Res. 34(Web-Server-Issue): 665-669 (2006) - [c27]Taro L. Saito, Shinichi Morishita:
Amoeba Join: Overcoming Structural Fluctuations in XML Data. WebDB 2006 - 2005
- [j22]Tomoyuki Yamada, Shinichi Morishita
Accelerated off-target search algorithm for siRNA. Bioinform. 21(8): 1316-1324 (2005) - [j21]Yasuhiro Kasai, Shin-ichi Hashimoto, Tomoyuki Yamada, Jun Sese, Sumio Sugano, Kouji Matsushima, Shinichi Morishita:
5'SAGE: 5'-end Serial Analysis of Gene Expression database. Nucleic Acids Res. 33(Database-Issue): 550-552 (2005) - [j20]Yuki Naito
dsCheck: highly sensitive off-target search software for double-stranded RNA-mediated RNA interference. Nucleic Acids Res. 33(Web-Server-Issue): 589-591 (2005) - [j19]Taro L. Saito, Jun Sese, Yoichiro Nakatani
Data mining tools for the Saccharomyces cerevisiae morphological database. Nucleic Acids Res. 33(Web-Server-Issue): 753-757 (2005) - 2004
- [j18]Jun Sese, Yukinori Kurokawa, Morito Monden, Kikuya Kato, Shinichi Morishita
Constrained clusters of gene expression profiles with pathological features. Bioinform. 20(17): 3137-3145 (2004) - [j17]Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita
Development of Image Processing Program for Yeast Cell Morphology. J. Bioinform. Comput. Biol. 1(4): 695-710 (2004) - [j16]Tomoyuki Yamada, Shinichi Morishita
Computing Highly Specific and Noise-tolerant Oligomers Efficiently. J. Bioinform. Comput. Biol. 2(1): 21-46 (2004) - [j15]Taro L. Saito, Miwaka Ohtani, Hiroshi Sawai, Fumi Sano, Ayaka Saka, Daisuke Watanabe
SCMD: Saccharomyces cerevisiae Morphological Database. Nucleic Acids Res. 32(Database-Issue): 319-322 (2004) - [j14]Yuki Naito
siDirect: highly effective, target-specific siRNA design software for mammalian RNA interference. Nucleic Acids Res. 32(Web-Server-Issue): 124-129 (2004) - [j13]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos
Report on BIOKDD04: workshop on data mining in Bioinformatics. SIGKDD Explor. 6(2): 153-154 (2004) - [c26]Jun Sese, Shinichi Morishita
Itemset Classified Clustering. PKDD 2004: 398-409 - [e2]Mohammed Javeed Zaki, Shinichi Morishita, Isidore Rigoutsos:
Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), August 22th, 2004, Seattle, Washington, USA. 2004 [contents] - [i1]Raghu Ramakrishnan, Rakesh Agrawal, Johann-Christoph Freytag, Toni Bollinger, Christopher W. Clifton, Saso Dzeroski, Jochen Hipp, Daniel A. Keim, Stefan Kramer, Hans-Peter Kriegel, Ulf Leser, Bing Liu, Heikki Mannila, Rosa Meo, Shinichi Morishita, Raymond T. Ng, Jian Pei, Prabhakar Raghavan, Myra Spiliopoulou, Jaideep Srivastava, Vicenç Torra:
Data Mining: The Next Generation. Perspectives Workshop: Data Mining: The Next Generation 2004 - 2003
- [j12]Jun Ogasawara, Shinichi Morishita
A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome. J. Bioinform. Comput. Biol. 1(2): 363-386 (2003) - [j11]Setsuo Arikawa, Koichi Furukawa, Shinichi Morishita, Hiroshi Motoda:
Preface. Theor. Comput. Sci. 292(2): 343-344 (2003) - [c25]Tomoyuki Yamada, Shinichi Morishita
Computing Highly Specific and Mismatch Tolerant Oligomers Efficiently. CSB 2003: 316-325 - 2002
- [j10]Toshihiko Honkura, Jun Ogasawara, Tomoyuki Yamada, Shinichi Morishita
The Gene Resource Locator: gene locus maps for transcriptome analysis. Nucleic Acids Res. 30(1): 221-225 (2002) - [j9]Jie Cheng, Christos Hatzis
KDD Cup 2001 Report. SIGKDD Explor. 3(2): 47-64 (2002) - [c24]Jun Ogasawara, Shinichi Morishita
Practical Software for Aligning ESTs to Human Genome. CPM 2002: 1-16 - [c23]Jun Ogasawara, Shinichi Morishita
Fast and Sensitive Algorithm for Aligning ESTs to Human Genome. CSB 2002: 43-53 - [c22]Shinichi Morishita
Computing Optimal Hypotheses Efficiently for Boosting. Progress in Discovery Science 2002: 471-481 - [c21]Jun Sese, Shinichi Morishita
Answering the Most Correlated N Association Rules Efficiently. PKDD 2002: 410-422 - 2001
- [j8]Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita
Efficient Construction of Regression Trees with Range and Region Splitting. Mach. Learn. 45(3): 235-259 (2001) - [j7]Jun Sese, Hitoshi Nikaidou, Shoko Kawamoto, Yuichi Minesaki, Shinichi Morishita
BodyMap incorporated PCR-based expression profiling data and a gene ranking system. Nucleic Acids Res. 29(1): 156-158 (2001) - [j6]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
Data Mining with optimized two-dimensional association rules. ACM Trans. Database Syst. 26(2): 179-213 (2001) - 2000
- [j5]Teruyoshi Hishiki, Shoko Kawamoto, Shinichi Morishita
BodyMap: a human and mouse gene expression database. Nucleic Acids Res. 28(1): 136-138 (2000) - [c20]Shinichi Morishita, Jun Sese:
Traversing Itemset Lattice with Statistical Metric Pruning. PODS 2000: 226-236 - [e1]Setsuo Arikawa, Shinichi Morishita:
Discovery Science, Third International Conference, DS 2000, Kyoto, Japan, December 4-6, 2000, Proceedings. Lecture Notes in Computer Science 1967, Springer 2000, ISBN 3-540-41352-9 [contents]
1990 – 1999
- 1999
- [j4]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
Mining Optimized Association Rules for Numeric Attributes. J. Comput. Syst. Sci. 58(1): 1-12 (1999) - [c19]Akihiro Nakaya, Hideharu Furukawa, Shinichi Morishita
Weighted Majority Decision among Several Region Rules for Scientific Discovery. Discovery Science 1999: 17-29 - [c18]Akihiro Nakaya, Shinichi Morishita
Weighted Majority Decision among Region Rules for a Categorical Dataset. Discovery Science 1999: 345-346 - [c17]Shinichi Morishita, Teruyoshi Hishiki, Kousaku Okubo:
Towards Mining Gene Expression Database. 1999 ACM SIGMOD Workshop on Research Issues in Data Mining and Knowledge Discovery 1999 - [c16]Shinichi Morishita, Akihiro Nakaya:
Parallel Branch-and-Bound Graph Search for Correlated Association Rules. Large-Scale Parallel Data Mining 1999: 127-144 - 1998
- [c15]Shinichi Morishita
On Classification and Regression. Discovery Science 1998: 40-57 - 1997
- [j3]Shinichi Morishita
Avoiding Cartesian products for multiple joins. J. ACM 44(1): 57-85 (1997) - [c14]Kunikazu Yoda, Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Computing Optimized Rectilinear Regions for Association Rules. KDD 1997: 96-103 - [c13]Yasuhiko Morimoto, Hiromu Ishii, Shinichi Morishita:
Efficient Construction of Regression Trees with Range and Region Splitting. VLDB 1997: 166-175 - 1996
- [j2]Shinichi Morishita
An Extension of Van Gelder's Alternating Fixpoint to Magic Programs. J. Comput. Syst. Sci. 52(3): 506-521 (1996) - [c12]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
Interval Finding and Its Application to Data Mining. ISAAC 1996: 55-64 - [c11]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
Mining Optimized Association Rules for Numeric Attributes. PODS 1996: 182-191 - [c10]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
Data Mining Using Two-Dimensional Optimized Accociation Rules: Scheme, Algorithms, and Visualization. SIGMOD Conference 1996: 13-23 - [c9]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita
SONAR: System for Optimized Numeric AssociationRules. SIGMOD Conference 1996: 553 - [c8]Takeshi Fukuda, Yasuhiko Morimoto, Shinichi Morishita, Takeshi Tokuyama:
Constructing Efficient Decision Trees by Using Optimized Numeric Association Rules. VLDB 1996: 146-155 - 1994
- [j1]Marcia A. Derr, Shinichi Morishita, Geoffrey Phipps:
The Glue-Nail Deductive Database System: Design, Implementation, and Evaluation. VLDB J. 3(2): 123-160 (1994) - 1993
- [c7]Shinichi Morishita
An Alternating Fixpoint Tailored to Magic Programs. PODS 1993: 123-134 - [c6]Marcia A. Derr, Shinichi Morishita
Design and Implementation of the Glue-Nail Database System. SIGMOD Conference 1993: 147-156 - 1992
- [c5]Shinichi Morishita:
An anternating fixpoint tailored to magic programs. Workshop on Deductive Databases, JICSLP 1992: 86-95 - [c4]Shinichi Morishita:
Avoiding Cartesian Products in Programs for Multiple Joins. PODS 1992: 368-379
1980 – 1989
- 1988
- [c3]Kouichi Fukunaga, Shinichi Morishita:
Lattice Programming Methodology. LP 1988: 96-107 - 1987
- [c2]Shinichi Morishita, Masayuki Numao, Shin'ichi Hirose:
Symbolical Construction of Truth Value Domain for Logic Program. ICLP 1987: 533-555 - 1986
- [c1]Shinichi Morishita
Prolog Computation Model BPM and its Debugger PROEDIT2. LP 1986: 147-158
Coauthor Index
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